Array 1 342636-342797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 342636 30 100.0 35 .............................. GACCGTTCTCTAGCATGTCCTTAGTCTCGTTTGTT 342701 30 100.0 37 .............................. GCGGCTCGGTATTTGTTACATTTACGTCTAACGATCC 342768 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TCCGAAGAGGAGGAAGCAAAACGGCGACACGAGGTGAGCCAAATGGAGACGAAGGAGGCGAAGCAAGTGATGGAGCTCATCGTCTCGTACGAACAGCGGGGAATGGAAAAGGGAATCGAGAAGGGAATCGAACAAGGGGTCAAACAAGGGATCAAACAAGGTATTAAACAAGGGCGCCAACAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACTGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGACGGCCCTTCGCCGTCAAGCCCCACATTGTTGTCGACCTCCAATCGTGCCAAAACCCCGGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGTTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCGTTGTGTGGG # Right flank : CAAATAAAAAGGCATAAATACATAAATACCCGTGGTGCTATATAAGTTGAATTAAAGATTTACAACTGAACACACAAACGATCGATCGTTTGTTCTGGTTTCTGGTTGATTCGCTGAATAAAGGCTTGGACATTCTTTCTAATTTCTTGCACACTCGAATAGAACACGTTGTAAATCACGTCTGATTTTAGCCATTTCCATAGCCCTTCAATCAAGTTCAATTGCGGACTGTATGGTGGCAAAAAGACGAGCTCTAACCGATCTTCGTGTTCTTTTAAAAATGGCTGAATGAGTTTGGCATGGTGAATTCGAGCGTTATCTAAAATCATCACTATTTTGCCTGTGGGATAGCGTTCTAACACAAGTTGAAGAAATCGAAGAAATGTTTCCGCGTCATAGCGTTCTTCTTCGATGCAAAACACTTCCCCTGTTTCGTAGTTCAACGTGCCAATCAGCTTCAGCCCTTGATGTTTTCCAAACGTCGGAATGATTCGTTGTTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 349781-348627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 349780 36 100.0 30 .................................... TGCATACGTTGAAGGTGACATGCTTTTCTT 349714 36 100.0 30 .................................... TAAAACTCTTGTTGATCGGGTGAAAGACGA 349648 36 100.0 30 .................................... AGCGTCAATAATGTCCAGGCGCTTAAACAA 349582 36 100.0 30 .................................... TTAAAAGCAACAAGCCCCTTTCAAGGTGAA 349516 36 100.0 30 .................................... GAATCGATGCGTCTGTTGGTTCGACAACAC 349450 36 100.0 29 .................................... GCTGATTACGATACTTACGATTTCCCTTT 349385 36 100.0 30 .................................... CAATCATACAGATCACCCTTCATTCGCTGT 349319 36 100.0 29 .................................... CTAGAGGGCATTTGTCCCTCTTTTTTCAT 349254 36 100.0 29 .................................... CTTATTCGCAGTGGCTCGGGGTCTGATGA 349189 36 100.0 29 .................................... AAGCTTGATGAAAAGGAATAAACAGCGAA 349124 36 100.0 30 .................................... AAGGTTGAAGAGATGGGTGATGATCGATGA 349058 36 100.0 30 .................................... TTCATTCGCGGCGACATGTCTGGTGCGATG 348992 36 100.0 30 .................................... GCTAACATTAATTTTTCATAAAAGTTCTCT 348926 36 100.0 30 .................................... TTTCATGGCCATCACTCCAAAATAAAAACG 348860 36 100.0 30 .................................... GTGGAATACGACGAGCATTCCGGCTATGTC 348794 36 100.0 29 .................................... CGGTTGGCGGAGATCGAGGAAGTGATCGA 348729 36 100.0 30 .................................... TCCGACACGTCATGCTTCTGCGAATCCTGC 348663 36 100.0 0 .................................... | G [348636] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : GCTTCGTCACGGCAAGCCGAAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTGCAACTGCACGTGTATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTCGATCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTGAACGAAGGGTACGATATGTTGCAATTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAAGCAACGGACAAACATTTGGCAAGATTAAAACGCAACTTGCCCCCTCGAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTCGGGGAACCAACGGCGCAAGAAAAGAAAGTGACATCCACCCAGCTGACGCTTTTTTAAAAAAAAACAGAAATGGTTCCTCTTTTTGCATAAGCGCCTTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : TTGCCAATAGTGATCGCGTTGCCGGTCGTCATTATACCTCACATTTCGCACCCTCTCGACGAAAATCGGGAGGATTTTTTCGTTCCGATGTCGAATGAATCCTTGACACACAAGGAACGTAAAGGAGTTTTTCTCTTATGAACGTTCAAGTCAAAAAGGTCTATCGCAATTCTTATTTGAATATAATAAGTGCCCTATTCAAGAAACTGGGTCTGCCTCAATTGATTGACCATCTCGTGCCCGTCGATTCGCAGTGCCAAACGCGAGTCAGCGATGCCGTTCAGGCCATCCTCTACAATGTGTTTGACGGCCGGCAAGCCCTTGTTCACTTGGAACATTGGGCTCAGGAGGTCGATTGTGAGAAACTCATCCGTCCCGATCTCCATCCTTCCTAGTTGAACGACGATGCGTTGGCCCGTCATCTCGATCGCCTGTATGAGGCTGGCATTCACAACGTCATCAGCACTTGCTTGATTCATATTTATCGCAAAGAAGGCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 358674-358966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 358674 30 100.0 36 .............................. AGATGTCTGGGCAGGGTTGTCGTGAGTTTGAACAGT 358740 30 100.0 36 .............................. GAAAATTTAATGTTAGTGATCCGTTTACGATCGCCA 358806 30 96.7 37 .............................A CCGTTTGACCTTTGTAATATTTTGGCTGTTATCAATG 358873 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 358938 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 93.3 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGATTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGCTGACATTTTTATATCATGTCGGCCTAGGCAGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACATGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACGGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGACGCAATCAAATCACGGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGTGAAGAGCGGGATGAAC # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1831983-1831686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1831982 30 100.0 34 .............................. TGAGTTCTCGGAAAAGTTGAAGAGATGGGTGATG 1831918 30 100.0 38 .............................. ATGAGCCGTTTAGCCAGGGCGATTTGCAAATGGGTCTT 1831850 30 100.0 36 .............................. AACGCATGGAGGCAAATCCTATCCATGTTCCTTTGT 1831784 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 1831715 30 90.0 0 ..............C......A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTAAACGGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : TGTCTCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGAGCGAATACAGTACGGTGAATCCGACAATTGCAGGGAGGGAAAACGTGGCCAAACAGCGCATCGATCATGACCGGTTGTTCAAGGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 1840530-1840103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1840529 30 100.0 35 .............................. TAGGCTTGTCCTTGCACGATCTCCGCCATGCCTTC 1840464 30 100.0 37 .............................. TTTAATGGACGGCCACAATATTCTCCACCAACTCCAG 1840397 30 100.0 35 .............................. ATTTGAGATACACACCGTCAGGAATAGCGACAGCC 1840332 30 100.0 36 .............................. TCTAGTAAAATGGATAATTTTTCATTCTCAACTTGA 1840266 30 100.0 38 .............................. TACATTCGCGCAAGAAGAAAGTATGTTCTTATGTCCAT 1840198 30 100.0 36 .............................. ATCTGTTCAACAGTTAAATCCGTGGTACAGGAATAC 1840132 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAACTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATGTTTTTTGCGTCAAAATCCTACAGCCAACACTGCTGAACGATATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGTCAAAAGGGGAAAAGCTTGATTTTATGCGCATTCTTTGGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTTCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTTACCGATGTCACCGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAACTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 1957008-1955490 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016552.1 Geobacillus stearothermophilus strain DSM 458 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1957007 29 100.0 35 ............................. GAAGTTGGTACTTGTTGTGAGCGGACTATATCTAA 1956943 29 100.0 37 ............................. GGTTTTCTTGCTTCTGTTCTTCGTTCTGTGAAGAATC 1956877 29 100.0 39 ............................. GTCTACAAGCGCCCTCAAGGCAGGTACCGATGTATTTTC 1956809 29 100.0 34 ............................. GCGGCGGGATGAATTCGTCATTGCGCCGAACTTC 1956746 29 100.0 36 ............................. GATCGTGAACCACTACAATATTCATTCGAGATCATC 1956681 29 100.0 36 ............................. AGAGCGCACCGATGCGTTTTTTGAGATGTTCGGCTC 1956616 29 100.0 35 ............................. CTATATGTTCAATCGTTGCTTTGTATTGCGCTTCT 1956552 29 100.0 36 ............................. CTGCCTGCGCTCGCGTCGCATAGTCCCAATCGTTGC 1956487 29 100.0 38 ............................. CTTTCTTAATTATCGGAAGTGTACCCTCTGCCGCGATA 1956420 29 100.0 37 ............................. CGAAATCCAAAAAGAAGAGGCAGAGAGGTGATGGCGT 1956354 29 100.0 38 ............................. CGCAGGGGCGGCAAATGCTTCATCGTCCGATGTACACG 1956287 29 100.0 37 ............................. GAAGATTGGAGGTATACGACAAGACTCAAAATGGATT 1956221 29 100.0 35 ............................. ACTTTTCCAACCGGCGATGTGTCATCAGCTCAATC 1956157 29 100.0 37 ............................. GGTTATCTTGAGGAGTACCGCGCGGAGTGGGAGAAAT 1956091 29 100.0 35 ............................. TGCAGCAATACAGCTTTCCGAATCAAGAAAACAGA 1956027 29 100.0 36 ............................. CCTCCTGCACCGATGTCGTTTTGGAGTTGGCTTAAC 1955962 29 100.0 35 ............................. TGAGTATCTACGCGACATCGAGCGATTGAGAAAAG 1955898 29 100.0 39 ............................. ATCATTGTAGGTGACTTGAAAGAAGCGGTTGTCATGTTC 1955830 29 100.0 37 ............................. CATTTTGAAGCATGGCTCGGACAATTCGAGTATGTGG 1955764 29 100.0 37 ............................. TGGAAACAGACATGTCACAACGAACGGCACTTGCCAA 1955698 29 100.0 37 ............................. AGACAGAGCAAAAACACCTAAAGCATACGGCAAAACA 1955632 29 96.6 35 .................A........... CCGATTTCAAGCGGCAGGCTGGCGAGCACCGTTCC 1955568 29 100.0 21 ............................. AACCATTTCATCGCCGAAGTC Deletion [1955519] 1955518 29 89.7 0 .......T................C...A | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.4 36 GTTTTATCTGAACGGAGTGGGATTTAAAG # Left flank : ATGAACGATATAAACCGCTGAAAGCGTGGTGGTGAACCATGTTTGTTATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATATCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGTCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATTGATAAAGAAGAAGACTCCATTTATTTATACGAAGTAGGAAATCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTCTAAGTTTTAAGAATTTGCAGTGAACCTCCTTTTAGCGGATAAATGGGGAAAAGCTTGATTTATCAAGGGAAGTGTGTCATTATTTGCGTAGCATAGAAAACACAATTACTACTTTACTGCAAAATGAGGTATAATTGTTGTGTAGGCATTAGCCGGAATTCCCTGCTACATCAATGAATATTGCTTTGTAACTGATAGGGG # Right flank : TCGGCGATAATGTGATGCCCGAGTTCGACAGTGACTAGGCAAACAAAATGCCTTTCGTCCCTTGATGCAAAAGTGACGAGAGACATTTGGGCACACTTTGGGCGTGTAGCTTAGGCGCGAGGATGGATGCCTAGGATCTTCGGAGGAGGCTCCAGCCCTAGAGCCGCAAAGAGTTGTGCTTGTTTGGCCGTCGGTTCAGTCCGTTGATGCAGGTCGCCGTTTTTGGAAGAAAAATGACCAAGCATGAGACGCTCACATTCGTCTCTTACTTTTGGCCATGATTCATGAGTCAGGAGAAAGGAATCGCGAAATGCTTTGGGCCAGACGTTCCAGGACGGCGCGATCCACTTCATCTGCGCGCCCAAACGAATCAATCACCTTCGCTTTCGCATATTTGGCCTTCGGATCCTATCCGTTGTGAGCAAGCTGGAGATACGCCACGGTCGTTCCGTCTTTGTTTTTGTGTGTTACTCGTCGTATGTACATGCCTATATTATAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //