Array 1 32-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000037.1 Haemophilus haemolyticus M21127 M21127_037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 32 37 100.0 34 ..................................... ACGCTGTGCATTCTTCCTGTACTTAATCTTGAGA 103 37 100.0 36 ..................................... AAACAAAATGATTTGTTCTTGAACTTAGGTTTCAAA 176 37 94.6 37 ...............A......A.............. TAATACTGATATTCGTTCTGTTGCTACTGGTGTAGCT 250 37 100.0 36 ..................................... ACAATGACAGATTCAAATAAACTAGACTATTATTAC A,T,T [255,262,282] 326 37 97.3 35 ................C.................... TCCAATACTTGAGCAAATAAGGGCGATTTATCCAA 398 37 100.0 35 ..................................... GGATGACAACTTACTATTATTTCAACGCAATGTGC G [418] 470 34 89.2 0 .................................T--- | G [491] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 97.3 36 GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Left flank : AAAAACCTGTTAAATGTTTTCATTTCAAAGGG # Right flank : | # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 26-1386 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000021.1 Haemophilus haemolyticus M21127 M21127_021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26 32 100.0 35 ................................ GATAAGTCGAAGGACAGCGCCCGAATCTCCTCAAA 93 32 100.0 34 ................................ TGATGGACAGTCCATCTTCGGCACTGCATAAACA 159 32 100.0 38 ................................ ACAATCAGCATCTTCAGGTTCACGCCAATCTTCTTCTG 229 32 100.0 34 ................................ TTGTAGATGATGAACATTTAGTCAATGCTAAAGG 295 32 100.0 36 ................................ TGCCTCACGTTTGCGTTTTTCTGCGATTTCTTCAAC 363 32 100.0 35 ................................ AGTCAGTTGAGTATCCGCCGCTTCTTTATTGGCAT 430 32 100.0 34 ................................ TGCATTGAATAAAAAAATAAAAAATTAGGGCTGA 496 32 100.0 35 ................................ AACAGAAACATTAAATAGCATTAAAAATCGCATAG 563 32 100.0 34 ................................ ACGCACGGCAAATACAGCCATTGTGAGTTGGTAT 629 32 100.0 33 ................................ CCTTTGAAGAAGTCAACGTAGGTGGCAGTCAAG 694 32 100.0 33 ................................ TATTGCTATTATCAACAGAAGGTAAGCAATGTT 759 32 100.0 35 ................................ GGCTATTGGTTGGACTAAATTGCGAGGAGCTATTA 826 32 100.0 36 ................................ TTTTACTATTTACTTTTAATGATTATGATGATGTTG 894 32 100.0 34 ................................ CGCTAATTGGAGGTGAAATGGATAACGAAAATAT 960 32 100.0 34 ................................ TATTAATGCGAATAACCTCAATGCTTTAAGGTTA 1026 32 96.9 35 ............A................... TGGCGTGTTGTTGGTAATGTCATTATCAATATGAT 1093 32 100.0 34 ................................ AGCTTGTTTTTGATTTGTTGACAAATCTTTTCCA 1159 32 100.0 33 ................................ CCGCACTTACAGGTTTTAAAATCGTGTGAATGT 1224 32 100.0 34 ................................ AGTCCAAATATCTCGCTCTTTCCCAAACTTTTAT 1290 32 93.8 33 T.........T..................... TCACAACGTGAATTAATGCTGATTTTCGGTGAT 1355 32 87.5 0 ..........TT....A...........G... | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.0 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGTAAAAGCTATGGCAGCGACATGG # Right flank : CGCTCACGCATTAAGCTAGGGGCAACCCTTACAACGCAGCTGTTTCAGCCAGCGTGTGTTAAAACAGCTCTGTTTTTTATTATTTAAATGTTATTTTTTTGTTAAATATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAACAAAAATGGATTTCAATAGAATTATCACTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGTGGTGCAAATGAAATCACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGGTGGTAAAGCATTACGCGTTGAATTTCCACAACAAGCTGACGCAGGTTCAATTAAACAAGCGATCATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAGTTTAAAAGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16-411 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000019.1 Haemophilus haemolyticus M21127 M21127_019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 100.0 35 ..................................... ATAATAATACCCCATAATCTCATTTTCTTTGAGTT 88 37 100.0 35 ..................................... ATCGTAAACTGTGTAACCTTGTAAATCTTTTCTAG 160 37 100.0 34 ..................................... AAGAACGAGTTAATGAAGTATTGAAGAACATGGA 231 37 100.0 36 ..................................... GCCATTACGCCAATATTTAAACCGATTGCAATCACC 304 37 100.0 35 ..................................... CACTAAAAGCTGAAGAGACTGCGTCTCCAAATTTA 376 36 83.8 0 ..............T..............-GG...GT | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 97.3 35 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : AAGGCGTAGAATAATG # Right flank : TGACTTTACTTTCTCACCTGTAAAGATATAGAGGATTTATTTATGATGCATTCTCTCAAATGAATAAAACAACATTCTATAGTATGATAGTAATTATCCTCAAAATTGAAGATTCATTAATTTTTTTATCTGAAAAAACGCTCAAAAAATAACTCAATGCCTTGATAATATTGCTAAACTGATGAAGTAATATTATTGAGAAGAATTATATATTCAAATTAGGACTATGAATAAATCATGATTAAATATATCCTGGTGATGCTCGTCTTTGCATCACCGTTCTTTGCGATGCTATTATTTCCATTCTTGGGATATGCATTGATAAAAATGGTACTGTTTTATTTAAAAAAGGAAGAGTATCTATATCACCAGCAAGTCCGCAGGGTAAAAAAACTATTTATTTACTTTAGTATTTTTTTCTCCATTTGGATGTTACTCAATTATTTTAATTCTTAATTATAAGAAAATATTATAGGAAGTCTTTGAAGATATCGTATCGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 5007-5906 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000019.1 Haemophilus haemolyticus M21127 M21127_019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5007 37 100.0 33 ..................................... TCACTCGAATGCCGAAATACGTCCGCAAGAAAT 5077 37 100.0 36 ..................................... ACATTCTCGTTATTCCAGCGTTCAGATTGTCTTACT 5150 37 100.0 36 ..................................... GGTTGTTTTCGATTTTGTTGATTAAGTTTTTCATGT 5223 37 100.0 33 ..................................... TACTCTACTTCTTCAGCTAAAATTGTATCTTCT 5293 37 100.0 33 ..................................... TTTAGCCACTCTTGAAAATCTGCTGGTCTTTGA 5363 37 100.0 37 ..................................... TTCTATAACTAGATCCGATTTGATTATATTTTGAAAA 5437 37 100.0 33 ..................................... ACACTGGATCTTTATAGTTCACTTTTGGGTTTA A,A [5444,5464] 5509 37 100.0 36 ..................................... TCTAAGGTTGTCTTCTGATGTTCAGACATGCCCATC 5582 37 100.0 34 ..................................... AGTAATGACCCTCTTTTGTTTGACGATTAGCCAG 5653 37 100.0 35 ..................................... CACTGGTGCACGGTTGGTTTCAGACACTTCTACGT 5725 37 100.0 35 ..................................... TTTTCAAGAGCTTGTAGTTTTTCATTGTAAGTAGT 5797 37 100.0 37 ..................................... GATGTTGTCCACATCATAGCTTGTGGCCTTAGATTAT 5871 36 89.2 0 ....-...............AC..............T | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 99.2 35 GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Left flank : CGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGAGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCCTCAACTGAAATTTACAAGCCTTACAAAATCCCCATCAATTGATTTCTGTATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATATTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGCTAGACATTCTAGAGCTAGAAAAAATAAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTGCTTATTATTTGCTCAAATTAAGAGCCAGCTCCTTAACCTTCCCAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : TAGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGAACTTTTATAAATGTTTCACTCTCCGCTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTACCTAGATAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAAACAAAGCCTTTACTAGTACATTCAAATTCGCCAGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTTCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCACTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTTTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 58076-59041 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000015.1 Haemophilus haemolyticus M21127 M21127_015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 58076 32 100.0 34 ................................ TAATTTTCCTTCTTTTTAACTTTAAATGGAGATA 58142 32 100.0 36 ................................ TATGAAATGCCCTTATCCTTATCTTGGTGATTTATG 58210 32 100.0 35 ................................ AAGAGCCAAAAGATAAAGCATTTTAAAAATAAAAA 58277 32 100.0 35 ................................ CATTGAACAGGGATAATCAATACCTTGTTCGTTAG 58344 32 100.0 36 ................................ AATGAGGCGTTAGAATTTATTAATAAGGTTAGACAA 58412 32 100.0 34 ................................ CGTTGGTGTAAAATGCCTAAACCTGACCCTCGAA 58478 32 100.0 34 ................................ AATTCAGTCCATTGACCGGAAATAAATTGTTGGT 58544 32 100.0 34 ................................ AATCGAATGTTGCGTCGCTGCCAAATGTTTACTC 58610 32 100.0 34 ................................ CACTTGCCATAATATTTAAAATATGTTGTGTACC 58676 32 100.0 35 ................................ TAAATCTTGGAGATTTAAAATGGACTTAAAAGATA 58743 32 100.0 34 ................................ AAGTTCCTGGCCTTGAGGCTGATGATTTAGGTAT 58809 32 100.0 35 ................................ TGTTATACCGGATGATTGGATACTTCCAGAAAATA 58876 32 100.0 34 ................................ TTTGGCATTAGGATTTAATCTATCATGATTACCT 58942 32 100.0 36 ................................ TGTGGGGGCTTTCACATTGGCATTTCTTGAACTCAA 59010 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGTTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTTCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAATGGGTCGCGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGCCTGCGCTTTTACCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAGCAATTTGGATGAATTAATCTATTTGTATAACGGCGATGCGACAGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGGTAGGGA # Right flank : ATTTTTAGTTGACAATGACGTATTATTATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 529-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000010.1 Haemophilus haemolyticus M21127 M21127_010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 528 37 100.0 35 ..................................... AGAACTGGTTTCGTTACCTGCTATCGTATTACCAC 456 37 100.0 35 ..................................... CTTCTGTGTTCCACTGAGTTAAAAACTTATCTTCT 384 37 100.0 36 ..................................... GTAAACCAATTAAGAACTCACGTTCTTCTGTCTTAA 311 37 100.0 34 ..................................... TAGCGTCGGCTCGGATACCAGCGATACTCTCGAA 240 37 100.0 34 ..................................... AAGTCTTCTGGGGTAAAGCATTTGGCAATAATAA 169 37 100.0 35 ..................................... TAATAATCGGTGCAATAACGTCATCCATACCTTGA 97 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 35 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCTATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTATCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTAGCTGAGTTTTGAAAAAAAGAAGAATGATAAAAATTGTTCAATATTTAATCAAATTAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : CTGACATTGCCGTTGAATACCTGCACATTTTCTTTGAGTCGAAAGACATTGCCCTGTTCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 14212-13746 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQP01000010.1 Haemophilus haemolyticus M21127 M21127_010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 14211 37 91.9 34 A.T.T................................ AAAACATTTTAGGCAAAAGCGCAAAAGAAATCGA 14140 37 94.6 35 .................G.........A......... GCATATGCCATGAGAGCAGAATTATCTGCTATTCA 14068 37 100.0 33 ..................................... TTACTATCAGAAAGTGAAAGCAGGAAGCTTCTT 13998 37 100.0 35 ..................................... AATGTGTTTGCGGATGGTCGTGGCTTCGCAGGCAA 13926 37 100.0 33 ..................................... AGAAATAAATAAGGAACTAAACCTTGTATTCTG 13856 37 100.0 36 ..................................... ACGTACCAAAAGTTAAAGAAATGATTAGCCGGATTC C [13848] 13782 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.1 34 GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Left flank : TTTTCATCCGTAAAGTCTTCAGGTGCGCCAACATTTGGCATCGTATTTTGATGTTCAAAACCTTTTTCCGGCACTTGGAAAGAAGCAGTTACATGACAAATTGTATTTTTATGTTGAATGGCTTTTACGCGTAATGCAGAAAAATTACGCCCTTCACGCAAGGTTTCTACATCGTAAATAATCGGATATTGACTGTCTCCTGGGGCAAGAAAATAGGCATGACAAGAATGTAAAATGCGATCTTCTGGCGCCACCTGCATTGCCGCTGATAATGCTTGAGCCACAACTTGCCCACCAAATACTTGGCGAAAACCTAAATCTTGGCTTTCACCACGAAAGATTAAATCATCAATTTTTTCAAGTTTAAGAAGATGAATGAGGTTATTGAGAATATCTGACATATTGCTTTCCTTGAGGATAAGAAAAAGTGCGGTTATTTTAGCGGAGATTTTGGGGAATGCCAAAGCTAGCAATAATTTTAAGATAGAAGTAAAAACTTA # Right flank : ACTGCAGTGGGGTGTTCAAGCCTTGTGTGGCAAGGCTTCCCAGAGCCACTTCCCAACTTTTTCTGATGCCTGAAGAGTTAGGTATTAATTTGATTAAATATTGAACGATTTTTATCATTCTTATTTTTTCAAAACTCAGTCAAAAGTGCGGTGTATTTTAACAGAGTTTTTCAGATGCGCCAGTCCTGGCTACAATAAAAATAAATTTTACAAATTTGTATTTGCTGACAATTTTTCAAAATTTGATTATACTTCATTCAAATTTTCATTAAATGGAGCAATTATGTCAGACACAATTTCTCTTGCATTTTCTGTATGGCATCATTATTTGAAGCAACTCTCAGAAAAGCATCATTTATCTCTGCCTTCTTTTCCTATTCAACCAATCGATATATCTTCTTTTTTACCCCAAGCAGAAAACATTGTTTTAGGCAAAAAAACTGAAACTCAAGACAATCTAAAATTGTTTAGCTTATTTGAAAACATCAATCAAGGAAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //