Array 1 206481-207005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010276.2 Flavobacterium psychrophilum strain PG2 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 206481 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 206550 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 206619 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 206688 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 206757 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 206826 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 206895 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 206964 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 95.8 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACAGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGC # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1728447-1726885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010276.2 Flavobacterium psychrophilum strain PG2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1728446 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [1728442] 1728370 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1728294 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1728218 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1728142 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1728066 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1727990 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1727914 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1727839 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1727763 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1727687 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1727611 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1727535 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1727460 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1727384 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1727308 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1727233 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1727157 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1727082 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1727006 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1726930 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //