Array 1 17581-17012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================================================================================== ================== 17580 32 100.0 43 ................................ GCCTTCTTTGTTAGCCGTATTATCTGAAACTGTGGAGTTGGTA 17505 32 87.5 46 ...............CC...AT.......... GCCATTGCGTGTGGTTACCACATTGCCCGACACGGTGGAGTTGGTA 17427 32 100.0 46 ................................ GCCATTGCCAACAGTAACCGTATTCTCCGACACAGTGGAATTGGTG 17349 29 81.2 43 .........A.....C..---T.......... GCCAGAGCCATTTGCTGTATTTCCTGACACGATTGAGTCGGTG 17277 29 81.2 43 ............---G....TT.......... GCCAGAGCCATTTGCTGTATTTCCTGACACGATTGAGTCGGTG 17205 32 100.0 127 ................................ GCCTTCTTTGTTAGCCGTATTATCTGAAACTGTGGAGTTGGTGAGGGTGACAGTGCCACCAGTGCCACCAGCAAAAATACCTCCACCAGTCATACCTGCCGTATTATTGGACACGGTGGCGTTGGTG 17046 32 84.4 0 .........T.....AG...AT.......... | ATT [17020] ========== ====== ====== ====== ================================ =============================================================================================================================== ================== 7 32 90.6 58 AGGGTGACAGTGCCATTAGCCCTAATCCCCCC # Left flank : CAAATGCCCCAATATCCACTGTGCCCCCAGAAATCCTAGGGAAACCCACCCCTCTTTGATCCGTAGTAACCGTAGTAATTGCATTATTACCCGCATTGATGGCAGGACTACCTGTTAAAAGGGCATGAGTCAAGGTCGCACCGCCATTATTTGCCAAAGCACCAAGTAATGGATCGACAGGACTGCCAGCAGTGCCAACCAGCGTACCAGTGGCAAAAGTACCCTCAAAACCGGTATTGATGCCAATTAAGTTATTGCCAGCGTTAATGTAGCCCGTGCCAACTGTGCTACTTCCAATATCGGGCGAGGTCGTCGTAGCAGTATTTTGGGCAACGATGCTGTTACCGATGTCGATCGTGCCACCGTTTCTAAATATCCCACCGCTATTGTCGGCAGTATTGAAAGCAATCGTGCTATTGCGAATCGTGCCGCCCGTGCTAAAAGTCAAAATCCCCCCGCCTTTAGTACCAGCCGTATTCCCCGACACAGTAGAGTTGGTG # Right flank : GCCATTGCCAGGGGCGTTACCATTTCTAATCGTTACACCATCAAAGGTGATGTCCCCTGCTGTTACATTAAACACCCCACTGGCTTTATTGCCATCAATAATCGTGTTAGTTTGTCCATTGCCCGTGATGGTCAGACCGGCTGCGTCATTAACTAATAGTCCACCAGTGGTTAAAATGATAGGAGTGCCATTAGTCCCCGGCGCAAACTTAATCTCATCCGCACCCACTAACGCATTAGCACCAATAACCGCCTGCCTCAGTGAATCAGCCCCAGCATCATTAGTATTCAATACGGTAAAAGTAGCCAACTTCACATCGGCATTTTGCACCGCTTGGGCATCAAACACAATCTGACCCGCCACATTCCCCGTGCTGTACTCAAACTGCCAATTTCCACCGTACTGGCTACTGCCCGTGATGTCCGTTGAGGCCGCCACCGTACTATTCGTTAAACTGCTAATCTCCCCCACCAATTCTTTCCCCGCAATACTGGCGGCTA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGGTGACAGTGCCATTAGCCCTAATCCCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 195942-198315 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 195942 36 100.0 37 .................................... ACAAACTCGTACCGGCTGAGGTTTGCGTGGCCCCACC 196015 36 100.0 34 .................................... CGTTTGATCTTTCGGTTTACGACCTTGTACTCGG 196085 36 100.0 37 .................................... CCCGCGCTTGCGAGCGCGGTAGAAAGGAACCAAATCA 196158 36 100.0 37 .................................... AGCGTGGTAGCGGCGGTTGTCCCAATAGCGGCCATAA 196231 36 100.0 36 .................................... TTATTGCCTGCTGGGTGGGCTGACAATAAATTAGTC 196303 36 100.0 35 .................................... GTTGAGGATGTGGTCGACTGGGAAATCGAGAATTT 196374 36 100.0 35 .................................... CCGGTCGTTCCTGACCAGCCGCCAGGGGCGGATCG 196445 36 100.0 36 .................................... CCGCCTGGGAATAGCTTTAGCAACAGTGTATTGCTA 196517 36 100.0 36 .................................... TGTCAATAGCAATCGACTGCAAGGTAGTACAGGGGA 196589 36 100.0 37 .................................... AACCGCTGTATGCCCTGCACAGCCCCCGAAATGTCCA 196662 36 100.0 38 .................................... CTTGAGATAGCGGACAATGTGGCGGACAAAACCCCCAT 196736 36 100.0 36 .................................... GTCTTCTCTAACCCATAGATGCTCCGTTATTTCTGA 196808 36 100.0 35 .................................... TTGAGCAATGTCACCAACCGTTAAATAGTCCATAA 196879 36 100.0 35 .................................... TCGGAATTGCCCCCCCCGCCCCCCGCCCCACCGAT 196950 36 100.0 36 .................................... TTTTAGTTAAGCACTTGCAGAAGTGGGCCAAACAGA 197022 36 100.0 44 .................................... TCCGCCGACAGCGCAACCCCCGGCGACCCTAGGATACGGGATTT 197102 36 100.0 39 .................................... TTGGTTCGCTGATTGCTTCACTAAAACTGGTGTCCAAGG 197177 36 100.0 39 .................................... ACGCATTAGCACCGCTAGCGTTAATCTGCGTTAGCGCGT 197252 36 100.0 40 .................................... CGAATCACAGGTCAATCACGAGGCATCGCCTGCAGTGGTT 197328 36 100.0 41 .................................... GGGAAAAGCCCCTTGACAGTGGTGCGGCGACCCGCCTTACG 197405 36 100.0 43 .................................... CAGACCACTCCCGCACTACCGCAGGCTGGTCGGGGTCAATCAA 197484 36 100.0 35 .................................... GAGGGCGATTCGGCAGGGTTTATCAACCCAGGCGA 197555 36 100.0 36 .................................... ACCCCAGGTGCTAAATAATACCGTTCTTGCTTGAAA 197627 36 100.0 36 .................................... TGTGATAGCGGAGTCAGTTGTCGCGCTCATGGGTGT 197699 36 100.0 36 .................................... ACGTCGGTATTAAATAGTGACGGAACAAAAACCTAG 197771 36 100.0 35 .................................... GCGCACCCCCAGAAGTATCCGGGGGGCATTCATGG 197842 36 100.0 36 .................................... CAAATTAGCCATGATTTCCTCCTAATGTTCTAAACC 197914 36 97.2 37 ...........T........................ TCGGCTCGAAGTCTGCTTTTTCAGCTTGTTCTTTGGT 197987 36 97.2 35 ...........T........................ CGGAAGGGCGGTTTCAGTACGGGATACCGAAACAC 198058 36 100.0 42 .................................... GCATGCAAAACCCCGGCACCCCACCCCGGAAATCAAGGAAAA 198136 36 100.0 35 .................................... CGGAAGGGCGGTTTCAGTACGGGATACCGAAACAC 198207 36 100.0 37 .................................... AATGCGCCCCCGCCACCGTCAAGCCATTTTTGCCAAC 198280 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 33 36 99.8 37 CTCGCTTCCCTCCGGGGAAGTGGAATTAATGGAAAC # Left flank : GAGTTGTGACCTGGGGATTGCCAAAGAGTAAAATCGTGTCCAGCAGGGGCAGTTGGACTTCCTGAATGACGGTGGCTTGGTGCTTGACGACCAAAAGTTCCCCCCGTAGGGAGAGGCGGCAGTCCTGCCGAGATACATAGAGAGTGTGCATGAGGAGGCTGGGTAGAATGTAATTCTTAGATTAAACCCTCCTATCGTGAAATGGAAGGTTTTTGGTGCGAATGACGAAACGACCAATATCGTTCATACAAGGTATAAATTTGTATAGACAAAAGAGGGGTTCGCAGGCGAAAAATGCGATGTTATGCGGTTTTGCGGGTAGCAACGGGGTCGGGGAAAGGCTGAAACGCCCATTTTCTCGTTGAGGCCGTCGGTGTCGCTCCCAGTCGGGGTTTGCGGGTTTGGGAAGGGGCGATTTTGGGGTTTTGTACTAACATCGCCGGGGGGGGTTCGCAAATGGCTCCTGAATGCTATACTGGGCGCAGGTTCTGGGAACAGGT # Right flank : CGATATTCCTGCGGAGCGACCCCCTGCGACCGCTATTCTCATAGCGTTAGCGATAGCGTGCCGTAGGACATAGCCATAGCATGTTATCCGACAGTTTTCTAATTCAGAAGATAATCAGATACATCAAATTGTAAAAGTGTCTTTATTACTACTTAATGCTTCGTTCTTTCCAAGTTGGTTTGCCAAATGCTGTTATTGTACCCCTTAATAAATGAAAAGGCTGTATCTGTTCACAAATCTATTGAAACTGCAATAGGGTTGCAGAATAAACACCTGAGAAAGCATTATCCTGTCTAGCCATAGATACCAATTGCCATACATATTCCTTGTTGAACCCGTTAGAAGGGCTGGGGCTGAACGACTCCATAGGTTTGGGTATCTAAGTAATGTTTTTCAACCGTGGTGATGAGGTCGCATAGTGCCACCGATGGACGTTCTAAGCCCCCATCTCCAGTATTTACCACCACTCGACCTGGGTGACCCGATGAAGCGTCAATATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTTCCCTCCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 647772-646348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 647771 36 100.0 39 .................................... CGGGCTGTCTGGCTGACAGCCTTGCCAGTCAGTAGTCGT 647696 36 100.0 37 .................................... GCGGGATTGCTCCCGCAGCTCCTGCAAGTCCACCTCT 647623 36 100.0 38 .................................... GAATTGACAATTCCCGCTCTAAAGAGACGAGGCTACCA 647549 36 100.0 41 .................................... TGGGCGCGCAGACCGGCCTCGTTGGTGAAAACGATTACCCG 647472 36 100.0 36 .................................... ATACGTCAGCTCGATACCCCCACGCTTGCGCGTGCG 647400 36 100.0 37 .................................... CAGGTGCGGAAGTAAACCCGGACGGAGCGGATGCGGC 647327 36 100.0 37 .................................... TCGATCAAGATCACGCAATCGTCACCTTGAAAGGCAA 647254 36 100.0 39 .................................... AAGATTTGATTGCAGGGCGTGACGATTTCTCTGTGTCCT 647179 36 100.0 35 .................................... ATGTCCATCAATCTTGAATTGAATTTTGTTGAAAT 647108 36 100.0 36 .................................... ACTACGTCCCCCCAAAGGGTACCCTCGGGCACCCTT 647036 36 100.0 37 .................................... AATCACAGAGCATTCCAAGCCGGTCAAACTCAAGAAT 646963 36 100.0 36 .................................... TGAACCGAACATCAGTGATCCGCTGGCGGGCGTCTT 646891 36 100.0 36 .................................... GTAAGATGTCTTCGCTTTCGCTAGTCAACTCGAAGT 646819 36 100.0 36 .................................... ATCCCTGGGGTCACCAGGGCTTCCTTGGTTGTAACG 646747 36 100.0 37 .................................... TTAAGGCCATACAGTAGCTTCGCCCACGCCTTTTCAA 646674 36 100.0 39 .................................... ACCCAACCCTTTGTTGCGATCACTTTCCGGTGATCGCTG 646599 36 100.0 36 .................................... AAACCGGGTAGGTCATACCCGTTTATATGGATTGTC 646527 36 100.0 36 .................................... TGAACCGAACATCAGTGATCCGCTGGCGGGCGTCTT 646455 36 100.0 36 .................................... GTAAGATGTCTTCGCTTTCGCTAGTCAACTCGAAGT 646383 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 100.0 37 CTCGCTTCCAATGCGTTAATTGGATTAGTTGGAAAC # Left flank : CTGATTATGTCAATGCAGTTAGAGAGGTGCGGGAAAAACTGAGTAAACAAATCAAAGAATTAATTGGACATAGGAAGGATAAAATCAAAATGTTTAAGGATTTAAGCCCGACCCGTTTAACCTGCGAATATGTATCTGGTCTATCTGCTTGTGAGCGATTATTATTGATGAAAGCTCTGCAACAAAAAGCGGAAGAAGCCCAACAAGAACAACAGAATGAGGAATTTGCCAGTTTTCTCCGGGCGGCGGGGGCAGTCGTGTTGCTAGGGATTTTATTTGGGGGTGGGGGAGGATTTTAGGGCAAATGGTTCATTATCTGCACCGCCGGGGTCAGCAAAAACGGGAAAGGCCGATTTTATGGTGGAGGTCGGCGGAGTGGCTCCTACACGATGTTTGCGGGATTGGGAATAGCAGTTTTGACCTAAATGTACTAACACGCTCTGAGGGTTGGCGGAAATGGAGCCAGAATGCTAATCTAGGAGCCAGTCCCAAATAAGGCA # Right flank : TGTTTACCGCCAACCGCCGGGATCTGTCCTATGTATCAAAGAAGGTATCCGTAATTATCGAGAGCGAATCTATCGTCAAGCTATTGAACAACAACTTAACGAAATGACGAAAGCCACTGAAAAAAGTAAAGACGATAATCTAAATTTCAACCAACCCATCGCTGTACATATAAGGGATGCTAGGGCTTTAGCTGTTTTTTGGGGACAACTAACTGAGTATCGCAATGATGTTGCCCATGTACAAATGCGGAAATCTCCTTTCAGTGGCAAAAATTTAGAGGATTTTGCTCTCAATAGGTTACTATCATCCCTAGAATCTATTTTCCCCACCTTAACTCAATCCTCTGACTTGGAAGAGAATAATTCCAATCAACGTTAAACTGCAATTATCAGACCTTGAACAGGAGCAACCATGTCTCAACACCACTACTGGCAAGCGAAAATCTGGGGGTTATTGCATGACCCGGCGCTAAAAGCGTTACATGATGGGTCAGGGCGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTTCCAATGCGTTAATTGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 673043-670588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 673042 36 100.0 35 .................................... CAGTTCCTGGAATATGGATTCCATTTACCTTGGTA 672971 36 100.0 36 .................................... GATGGAAATAGCAGACGCAGTTTACAACTTGCGGTA 672899 36 100.0 38 .................................... TTTCATGAAGTCTGCTGAATTAGCGAAGGCAGAAGAAG 672825 36 100.0 35 .................................... TCAACTTAAATTCGACGCTGGTCGGGGCACCCTTA 672754 36 100.0 36 .................................... CTGGGTGGAGTTGCTTTTTTCCAATAGGGACATCGT 672682 36 100.0 36 .................................... GAAATACGAGGCGACGTTCGCGTTCCGACCCTCTGA 672610 36 100.0 37 .................................... CAGCCATGCTGGATTGGATAAAAGCCCGTTCTCCTAT 672537 36 100.0 36 .................................... GATGGAAATAGCAGACGCAGTTTACAACTTGCGGTA 672465 36 100.0 40 .................................... CTAAATTCAATTTTTCCAACTTCATGAAATCGGCTGAGAT 672389 36 100.0 36 .................................... AAATCCCAGAATACCGCTGGGTTCGGTCAGACGGGA 672317 36 100.0 36 .................................... AATCCCCGACATTGTGATTGGCTGTATAGCTATGAT 672245 36 100.0 38 .................................... ACCGCAAAATAACCCTGTCCAGTAGAATTACTGCTCCG 672171 36 100.0 37 .................................... AGTAGTGTCAATTTATCGTTAGAAAATGCTGGTTTGG 672098 36 100.0 40 .................................... CCTACGATACCGACCAAGGGCAATCACTGAAGATGATCGG 672022 36 100.0 36 .................................... CTTTTGCGCGTACGAGATTAACGGGCAGGACGCCAA 671950 36 100.0 36 .................................... ATGCCGAAAACTTAAGAACCCGGGGGAAATACACAA 671878 36 100.0 39 .................................... AGTTTTTATGACTTTCAACACTCAAGAACCCCGGGTAAT 671803 36 100.0 36 .................................... CCTTGCGGGTCAGCCTTTTTCCATAACAACAGATAT 671731 36 100.0 38 .................................... GCTGCGAGAGCGCTGGGGGGTGTTCCAGGAGGAGGGAA 671657 36 100.0 39 .................................... GGCATATGACTACCTTTGTCAAACGGCGTTTGAAAATCT 671582 36 100.0 39 .................................... GGGGAACAAAGCGGCACTGGAGGGGAACTAATGGACATT 671507 36 100.0 38 .................................... CTAAGAAAACATTTAGCCACCAGGGGGCACGATGGAAC 671433 36 100.0 35 .................................... CCGGATCAAGTTTTGAAATTATTTTTGGATTTACT 671362 36 100.0 42 .................................... TGTACACCTGCGGCGTTGCGGAAAATCACCCCAACATATCCT 671284 36 100.0 36 .................................... GCCTTGATAGCCCCGGCGTTCAATTGAATGCTAGAC 671212 36 100.0 37 .................................... AAGAGGTACGCATGCTTAACAATTTCACTCGCCTTAG 671139 36 100.0 38 .................................... ACTTACCTAGTCGGTCTCAATCCGCCTACCTTACGCCT 671065 36 100.0 35 .................................... GCCTCTCAGATTAGTAGAAAGCGTTCAACTATGCG 670994 36 100.0 38 .................................... ATTACACCTACCAGCATGGCGGGAGCCAGCGGTCGATT 670920 36 100.0 36 .................................... ACAGGTACGACTGGGACGAAGTTATCTCCCAAAAAG 670848 36 100.0 39 .................................... AAGTCTCAAGCGTCAATACACCTTTCCTCACACCTTCCC 670773 36 100.0 41 .................................... ATTTTGATGACCAAGAATTTTTAGATTTTGTTGACGAAAAA 670696 36 100.0 37 .................................... TAGCACGGCAATTTCAGTTCCTTTGACGCACACTGTA 670623 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 100.0 37 GTTTCCAATTTATTGGGTTCCCCAGCGAGTGGGGAG # Left flank : CCCATCCTTCACGGATATGAGGATCATGTCGCTGCCGGATTTCGTCCAATAAATTCCAATCCCAATCAGGATGATAATGCTCATCTAGAGCAATGGTATTACCAGACTCAAAGTAATCAACTAAAGTTGCCATCATTGCTGTCAAACTATTAAACATGAACTCTGGCGATGAGTCTTTGCCCTTATAATAGACACTACCACTTGCAAGCTTCTCTATATCGCATTCTACCATTATAAGATCAGCATCAAGGCGGGCAATAGGAAATAGAAATTTTGGCAGATATTTGTATTTTACATACTTATATTCAAACAGATACTCTCCTTGATCTCTTTCTAGTGCTACCTCTTTAACATCACACCAACCGCCGGATTCAAACCAGAGAGCAACCTTCACAGCGTAGCTAATATCTATAAAGTCTAGGCCAAAGAAAAGCCGAAACTGATAGGAGTTACTTCCATTCCTCCATTGGTAAAGAACGAAAAGCTCCTCATTGAGTTGA # Right flank : CTACCCCTATTAAAACCCGCATGGGCAGGGAATTGCAAGGGGCATTTGCGAGCGACTCAAAGAATGTTTATACTTTGTACTATTTGCGGACTCCGAAAAGTGCCTCAAACCCCTTCTGGGAGCCATGTCGAGCGTCTCAACGAAAGAATGGGGGTTTGGCGGTTTTTGGGCGATGCTCGCAAACTTGGCGGGGATGTCCATCAGATGATCACCGAACCCGGTTCTTGGGCTAGGGACGGTCCACCCCACAAATCTACTTGCGTCAGGGTATGTTGGGAAATGGGATAAAAGCGAATGCAATCTTCCCCTTCTTTATATCGCTTGCGTAAACGCTTTTTTAATTCTTGATATTGTTCCAGGGGCAATACACATTCAAAAACGCTATACTGCACCCTCTTCCCATAACCTTCCAGGATGTCTGCCATTTTTTTACGTCGTTTATCTGAAGGGGTGTCATAGCAGACAATATACAATAACATTTTAACGAATTTGATAGGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTTATTGGGTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 5 1399195-1396193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================================================= ================== 1399194 37 100.0 36 ..................................... ACGATGGTGGGGGACACTTACGATGGTGGTATGGTC 1399121 37 100.0 35 ..................................... CATATTGCAAAAAGACCTGTACCCGCAGGCCATAC 1399049 37 100.0 34 ..................................... TCCTATGCCTATCGGAGTCAGCGGTGTGTTACCC 1398978 37 100.0 34 ..................................... ATAGAGAATTGAAAGTCCATTGGCAGGGGGAACT 1398907 37 100.0 35 ..................................... ACAAGGCGGCGGAATCTGCCAAATCCTGGGATCAG 1398835 37 100.0 37 ..................................... GTTGGTGAATGATGCGATTGAGGCTCCCGTGCCCCGC 1398761 37 100.0 35 ..................................... CCTTCGAATGAGGAAGAGGAAGGGATGGTGATATG 1398689 37 100.0 35 ..................................... CACTTTGGAAATCGTGCTATCTGCCCTGGCCTCGC 1398617 37 100.0 35 ..................................... TAAGATTTGCGAGGTATATTAAGGGATACTTTTGG 1398545 37 100.0 35 ..................................... CGTTGAGGGATACAGGTGAAAGTGGGTTCCACTTT 1398473 37 100.0 37 ..................................... AATATATTGCTTGCCAACACTCAAACGCTGGCATAAT 1398399 37 100.0 36 ..................................... CTTAACCTAGTCAGGTTGATAGGGATCGCACCCCGT 1398326 37 100.0 36 ..................................... TTACGAATCCGGCTATCTGGCGCACCGTTGCACCAG 1398253 37 100.0 34 ..................................... TGCGTCGTGCAGTTTCAGCGCCAGTTCAATTAAG 1398182 37 100.0 36 ..................................... ACCCCACCGACCACCACCTCCGTGGTCGCCGCCAGG 1398109 37 100.0 34 ..................................... GATAAACTAAACCTGATTGAACAAGTTTTAGAAA 1398038 37 100.0 35 ..................................... ATGTGGTAGAACCGCAAGAAAACCGCTTCAAAAAT 1397966 37 100.0 38 ..................................... AGGCACCACCAGATCACGGGATGCCCCGGCGTAGTGGC 1397891 37 100.0 32 ..................................... ATCGGGACCGGGTTTATCGTTTTCAACAATGA 1397822 37 100.0 35 ..................................... GCTCAGCATTGGCACCGCCAATAATGACCCGATAT 1397750 37 100.0 35 ..................................... CTACCAGTGATGGGGTGATTGTGCGGGAATCCACT 1397678 37 100.0 33 ..................................... AATACAGTTCCACCCCTTTATAGTCTGGTAGGG 1397608 37 100.0 33 ..................................... GGCCAAGGCCAACGTGCCCGTTGCCGTTAGGGA 1397538 37 100.0 35 ..................................... AGGTTCGCCAACGATTTTTCGTTCATGTCTGGATC 1397466 37 100.0 37 ..................................... TAGTTGACTACCAGGAGGAAGCCATGGAAATTTCTGA 1397392 37 100.0 32 ..................................... CCCTAATATCGGCGGGGCATAAATTGCGCGTT 1397323 37 100.0 35 ..................................... ATTACCTGGCCGGTGGGGAACGAACCGCCATAACG 1397251 37 100.0 34 ..................................... AATGTGGATTATCAGGATCAAAACGGCGGGAAAT 1397180 37 100.0 36 ..................................... GCTGGGAGTCTCGGTGATGGTTTGAGTTGGGGTATT 1397107 37 100.0 35 ..................................... GGTAGCAGGAGGTTGACAATCGGATTGCAATCCGA 1397035 37 100.0 33 ..................................... ATTGAGCAGGGATTCCGTATTATTAAACTCCGG 1396965 37 100.0 36 ..................................... ACCTTTGACCGGCTGTACGAGGTCGGGGAAATGCTG 1396892 37 100.0 35 ..................................... GTTAATGAACTGAAACTGTAGGCCGCCTAAGCAAA 1396820 37 100.0 36 ..................................... TGGTGTTCCCCAGTCCGACCGGGCGGGTGATTGATT 1396747 37 100.0 217 ..................................... TCTCCTGGTCCTGCGCCCCACCAGGTTCTCCAAATATTGCATTCATTCTTAGTGGGACTTTGAGAGAAACTGGCTCCTAAACGGCCTCAGACCTAGACACAGCAATTGTTTTACCTCGATCAGCATATTTTCTTGATGCGACTGGGTTCCAGCCATTATTACCTTGCCGATGTGTTTTGCCTGTCTTGCTTGAGCTTGAGCCTGTTTTAGGGCTTAA 1396493 37 81.1 35 .ACTT..AA.G.......................... GTCCTTAATTTTTGCGACCAGCCCAAAGTCCGACT ACC [1396478] 1396418 37 100.0 53 ..................................... ATTGGCCCGCCCCTAGCCGCCGGGAATACCCAGGATTGCATTCATTCTATGGC 1396328 37 83.8 56 T.....CG.T.C...G..................... TGGTTGAGGTCGTAGAGTGCATCGTAGGTCGCTTGCGATTGCATTCATTCTATGGC A,G,C [1396312,1396315,1396323] 1396232 37 83.8 0 T.....CG.T.C...G..................... | A,A,C [1396216,1396219,1396227] ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================================================= ================== 39 37 98.7 41 ATTGCATTCATTCTTAGGAGTGAATGAGGATTGAAAC # Left flank : TACCAGCCATTTATCCTGCGCTAATTACCATGTCTCGCTTTGATATTCTTGTAACTTATGATGTAAATACAGAGACATCTGAAGGAAGAAAGCGTTTGAGAAAAGTGGCGATTGCTTGTCAAGATTATGGTCAAAGGGTACAAAAATCGGTATTTGAGTGTCGAGTGACTCAGAGCCAGTATGAAAAGCTCTCTCATCGTCTGTATAAAATTATTAAGCCAAATCAAGATAGCATCAGATTTTACAAACTCCTTGGAGGTAGGGAAAACTGTGTTGAATCGTTTGGTGTTGATACTTTTGTTGACTTTGATGACCCACTGATTATTTAACATGGCGAACCCCTAGCGATGCTAATTTTACTGAGAGGTTCGCAAATGCCTATGCAGTCGAGGTTTGAGACGTTTTTTGGGGAAAATCTTTTGATCCAAATCGAGAGAAAATACAGGGTTCGCCATCTAACGCTTCAAACCCTTACCCCATCGTGTGTTATAGTATGTGCC # Right flank : ATATTGTGCCCGCGAAGGAAGACAAAGCCAGCTAACGGCTAAACTCACCCGCTGTAGAAAGACTTGAACACTCACGGACAACTTCTCCGCAGTCGGGTGCATTGGGGTTGTTATGCCGCCGCAACTATCATATTCTTTGCCTGTAGGGATTAACGCTTATCTATTTTCAGCCATGCAAAAACTTGCTCGGCTGTTAGTTCTAAATGGACTCCCTCCAGTACTTGAAGCTGGCAAATACCTCTACAAACATTGGGTTCTTGGTGTGGAGCAAAAATCAGGACAGAATAATCATCTGGATCAAGCATCCACCCCAACCGACAACCATGTTTTAGGCAATGCAAAAGGTTATCAATTACGCGATTCGCTTTCTGATCAGGTGAAAGGATTTCGATTGACCAATCAGGGGCTGCGATAAAATTATCCTCTGGCTCTCCCACCTCGTTCACTTGAATTCGATTCCATGCAATTACTGCAATATCAGGAACAACAGATCGTCCAGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATTCATTCTTAGGAGTGAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 2206338-2203094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017675.1 Gloeomargarita lithophora Alchichica-D10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================================================================================== ================== 2206337 36 94.4 35 ....................A.T............. CGGCGGCGGAAGTTGTACTGCAAACGGGGGGTGAT 2206266 36 94.4 34 ....................A.T............. GTATATGACAGGATGTAATCCGCCCCAATTGTCA 2206196 36 94.4 37 ....................A.T............. GGCAGTGATGTAGGGATACCTGACACCAATTCCCAAC 2206123 36 94.4 36 ....................A.T............. AAATTGTTTTGATTTCATGCCCGGAGATTCAGTTTT 2206051 36 94.4 37 ....................A.T............. TTTAACGGTATAGCATAATCTATCCATATTTGACCCT 2205978 36 94.4 35 ....................A.T............. GATATTCCCGTCCGCCGTTTGGAATAGGTAATATC 2205907 36 94.4 35 ....................A.T............. CGATCTTGCGCCGTCAAGCCGCGCATGGTGAACCC 2205836 36 94.4 35 ....................A.T............. ATATCGAGTTATCGGGTAACACACCGCCGACCCCG 2205765 36 94.4 35 ....................A.T............. CAATGCAACTAGCCAGCGAGATTCGAGCGGTTTTT 2205694 36 94.4 36 ....................A.T............. ACACGACACACAAAAATTGAAGTCCAGCACTAAACT 2205622 36 100.0 35 .................................... TTATGAACGAGTGACGGCAATGATAGGGGGGTAGG 2205551 36 100.0 37 .................................... GGTCCTTTGTTGCCAGCACGTTTTCACTTGGGGATCG 2205478 36 100.0 35 .................................... AGCATCAATAATCCGGCTCAGCGATTGGTGGAATA 2205407 36 100.0 36 .................................... CCTAACGTCAAATGTATTGGCTACAAAGGGGAATCC 2205335 36 100.0 36 .................................... ACAATTGCCCTGGCTTCAACTTCTTATTAACTCCTT 2205263 36 100.0 39 .................................... TAAATATCCACATCATTCAAAGATTCACCGCCTTGTAGT 2205188 36 100.0 37 .................................... ATATTTCCCCTCCAAATATACCAAAAACATCATAAAC 2205115 36 100.0 35 .................................... GAAATCAGGGATACCAGAGCGACGGTGGAGATGTG 2205044 36 100.0 222 .................................... ACCATTCCTACTATTGGGACTTTGAGAGAAACTGGCTCCTAAACGGCCTCAGACCTAGACACAGCAATTGTTTTACCTCGATCAGCATATTTTCTTGATGCGACTAGGTTCCAGCCATTTTTACCTTGTCGGTGTGTTTTGCCTGTCTTGCTTGAGCTTGAGCCTGTTTTAGGGCTTAAAATTTATAAAGTCCCACTATTTTGATTTTGTTTGGTTTTTGTT 2204786 36 100.0 36 .................................... GTCGAAGTCGGCACCACCACCCCGGCGGCGGCAATG 2204714 36 100.0 36 .................................... AACTTGATTGGTAATAGTGATGAACATTCAGGAATT 2204642 36 100.0 36 .................................... ACCGACTGGAACCCTGAACGTATCCTATTAAAACGG 2204570 36 100.0 36 .................................... TCTTAAAAACGGTTATCAATGTGCCCACTGCCGCCG 2204498 36 100.0 35 .................................... TCTGACATCGAAACCCATGAACTCATTGACTGAGG 2204427 36 97.2 36 ..........................T......... GTCTAGACCACCTACATTACCACTAGGCACTTCATT 2204355 36 100.0 37 .................................... GGGACTTATTACGGAGGGCAAATTTCAGCAACAAAAT 2204282 36 100.0 37 .................................... ACCATTCCTACTATTTTGATTTTGTTTGGTTTTTGTT 2204209 36 100.0 36 .................................... GTCGAAGTCGGCACCACCACCCCGGCGGCGGCAATG 2204137 36 100.0 36 .................................... AACTTGATTGGTAATAGTGATGAACATTCAGGAATT 2204065 36 100.0 36 .................................... ACCGACTGGAACCCTGAACGTATCCTATTAAAACGG 2203993 36 100.0 34 .................................... ATGGCCAGCGTTTGGATATTTTGATCTCTCTCCT 2203923 36 100.0 35 .................................... TCTGACATCGAAACCCATGAACTCATTGACTGAGG 2203852 36 97.2 36 ..........................T......... GTCTAGACCACCTACATTACCACTAGGCACTTCATT 2203780 36 100.0 35 .................................... TGCAGGATGCTGAGCATGATGCGGCGTTTGTGGTG 2203709 36 100.0 38 .................................... TGTACTTACCTGATATTTTCACCAAATCCCAACCGTTA 2203635 36 100.0 38 .................................... GACAATTGGCTCCCTGCCAACTGGGAAGATTACGACTA 2203561 36 100.0 38 .................................... GCGGCGACAAGCCCCGATTCCCCCAAATTGTCGATCAG 2203487 36 100.0 35 .................................... GGACAAATACGTTACAGCACGCACTCCGGGCATAT 2203416 36 100.0 35 .................................... TTTATAAAACGAGGAATAAGAAAAAAATCCGGGAG 2203345 36 94.4 35 ....................A.T............. GTCAGCGGCTGGAAATCAAACGGGCGGCACTGGAA 2203274 36 94.4 37 ....................A.T............. AAGCAATATACTTTACGCCGCGACGGGGGGAGGGATG 2203201 36 94.4 36 ....................A.T............. TCAGATTGACCAGGAGCCAAGGGAGCGGCCTGCGCT 2203129 36 94.4 0 ....................A.T............. | ========== ====== ====== ====== ==================================== ============================================================================================================================================================================================================================== ================== 43 36 98.0 40 GTTCCAATTCCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : ATTCGTGACCCGAAGCGGTGGCGAAAAGCGTTTAAGTTGTTGAAAGGATACGGAGAAAGCGTACAATTATCTATTTTTCGATGTCATTTAAGCGAGCGTTTACGGGAAAAATTGCGATGGGAATTAGAGCAAATTTTAGAGACGGAAGACCGTTTGCTTTTGGTGGGATTGTGTGGGCGTTGTGCCGACCGGATCACCGCTTATAATCGGGAGGAAACCTGGAAAGAGTTGCCTGGATTTCAGATATTCTAGGTTCAGGTATCTCTGGCTGTGACGGGGATGCAGTACGGAGCGATCCGGGGGTGTCCCGCAGGGTCGTCAATTCAGGGAATAGTGCAATTTTTTGATCCTTGAAAAGTCTGAAAGGCTCTCTAGTGGCTGATTGCAGACATAATAGTGTATGATATTAGCAGTAGATTGCCGTTAGGCGTTGATCACCCGGGGAGGTGCTTGTATTTTCTTCTACAGTCCCGCTCTGGGATGACGTTCCAGCGATCGGC # Right flank : AGTCCGTTACCAGCAGGCATTGGATAGCATGATTTTCCGGGCTAATGAATTACCTTTTTACCCGCCCAATGGCTATGGTTGCCGGTCTAGCAACGGGTTGAAATGTTGGAGCGGATGGTGTCGAGGATGCCGCCGGAGATTGGCCGCTTTGTCACCCAGGAGGGACGGGAAATTTTAGCGCGTATGGGAGTGGAGGTTGATGGTTTGCCAGAATTGGTCGTGCCGGAAAAGGCTGGTTTGGGTGTTGCGGTTGAGAAACCCGAAGGTCTGCGAGTAACAAATTACGAAGGGTTGGATAATTATGGTGATGAAAGATTGAAGGAACGGCGAATAACCAGAGAGGAAGTTGATGAGGCGGTTGCGAATCCTGTGCTTGTGTTAAAACAGGGTGGGGGACGCTATTATTTTTTGGGTCAATATCAAGCCGTAGTTGTTGATGAAATGGGCAATTTGATTACGGCTTACAACCGAGTCCCCAAAACTAAATATGATGGGTACCG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTCCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : GTTCCAATTCCTTTGATGCCATTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //