Array 1 151-1787 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFT01000019.1 Flavobacterium psychrophilum isolate 67-SE564_S20_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 151 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 226 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 302 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 378 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 454 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 530 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 606 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 681 46 100.0 30 .............................................. TTTTAAAAAATGTTTAAGTAGGAAAACTTA 757 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 833 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 909 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATCATTGTTTT 985 46 100.0 29 .............................................. TTTTAATGGTTAAGTAAAGCAACTGTAAT 1060 46 100.0 30 .............................................. TAATAAGTTGCGAGATGTCGTATATTCCGT 1136 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1212 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1287 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1363 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1438 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1514 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAGTATTTAGC 1590 46 100.0 30 .............................................. AGTCAAAATAAGGTTTTAAAAGCGGCTTGG 1666 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 1742 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 471-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFT01000089.1 Flavobacterium psychrophilum isolate 67-SE564_S20_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 470 29 100.0 40 ............................. CCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTC 401 29 96.6 40 ........................T.... CTGATATTAAACCAGAACAGCCTGCAAAAATACCCCTTCT 332 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 97.7 40 AATAGCAGTCACAGAATTAGGAATGGTAA # Left flank : TCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAGCAGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAATTACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTTCTTAAACTGCTACAGTCTGCAAAAGCACGCTCTTC # Right flank : ATCGATGTTAGACCAGAACATTTTTCAAAAGCAGCATCTCCGATAGATGTAACGGTATTGTTAGGGATTGTAATTGATGTTAAATTAGAACAAAGCGCAAAAGCATCCTTTTCGATAGATCTAACAGAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGTAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATGG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGCAGTCACAGAATTAGGAATGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //