Array 1 69978-69770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHC01000025.1 Gilliamella apicola strain Bif1-4 Gilliamella_apicola_Bif1-4_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69977 28 100.0 33 ............................ AATTTACATAAGAATGACGCCCGAAGACTTCGA 69916 28 100.0 32 ............................ ACTTATTTTATCTGCTCAAAAATTATACACAA 69856 28 100.0 32 ............................ ATTAGCACCCGTTGCCGGCTCTATGCTAATTG 69796 27 96.4 0 ......................-..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTTACCGCCGCATAGGCGGTTTAGAAA # Left flank : CTTATTATTTAATGGTTGTGGCATTAGTGGGTTTACTTACAGGCATAAAAATGAAAGAAACCGCAAACCGTCCACTCCGCGGCGCAACGCCCGCAGCATCAGACAGGTCAGAGGCAAAAGAAATATTATCGGATCACTTTGACTCAATAGAACAAAGAGTCGAAGATATAGAACAGCAGATCGAAACATTACAACAACAACGTCAGAATTTAGTCGATCAGCATCCTAAGTTAGATTGATCTTGTTATTTTTTAGGTTTTGTATGTTTTATTTAACATACAAAACCTTAATTAAATAAAATCAATACGCTACCTGAGTAATTTTTAGCGATAAAATTAATCCATCATAGAAATAGCTAAAACGCTGCCAACCCTTTTTTTTATTAATAAATTAAAGTAAATAAAAACAAAGCATTATAAAACCGCTACAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATAGTATATTGGATTCTA # Right flank : TTCTGGCATTATTATTTTTAACAGTATGACGTCCACAGCTATATAACAGATTGATTTTATTTAAAATTATTAAATTAAAAAATAAAATCAATATTCTACCTGATTGATTTTATATAAAAATGTACCGATAATTGAGTGCGCTAAACAAGAGCGATAAATATGTGTAATTTTGGCACAATGTAAAAAATAAAAGAGTTTGAAAGTTTACTGTGAAAAAACTATTTGCACATTAACTTACTATGATATTGTCGACGATATTCGGTTGGTGTTCGTTCTGTCTTTTTTTTAAAAATACGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCTTTTAATAGCGATTTGGCATATTCTAAGCGAATATGATTTAGATATTCATTTAACCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAGTGTAAAACATATTAGCTAAAAAGTCGCGTGTAAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 277873-278504 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHC01000024.1 Gilliamella apicola strain Bif1-4 Gilliamella_apicola_Bif1-4_contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 277873 28 100.0 32 ............................ AACTTATCTCTCGTGCCTGTCCCCTTTAAAAT 277933 28 100.0 32 ............................ TGTAGACGAAGTGAGTCTTAACGGTTGACTTG 277993 28 100.0 32 ............................ TAGCAAGAAATATTCAAAAAACGTTTTTGATA 278053 28 96.4 32 A........................... GTAGTTTTAATATAGTTTTGTGTTAACTATGT 278113 28 100.0 32 ............................ AGTGAATCGTTCAGGAGAAAAATATCCGAAAG 278173 28 100.0 32 ............................ AACAAGTAGTCATTTAGTCACGAAAAAAACAG 278233 28 100.0 32 ............................ AATATAACTTGTAGTTTTAGAGGAGTACGCGA 278293 28 100.0 32 ............................ CCTCTCTACGGCTAATAATACCCAGTGCATCA 278353 28 100.0 32 ............................ ATTGCTGACACGTTCGACCCAGTAACCAAGGT 278413 28 100.0 32 ............................ TGCGCTTAAAAATTACGCATTTTAATATAAAA 278473 28 85.7 0 C.....C...........G....T.... | TC,T,T [278492,278499,278501] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.4 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : ACAAAGAACCAAGCACATATTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGGCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTGATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATCGGTGCAGCCTAATTAGAAAGTCACTGATTTTTACTTTCATATTAGCCATTTTATAGCTACCTGTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTAAATTTTAAACTTGGGAAATATTAAGAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTATATTTTAAAATTCAATAAAATCAATAAATTAAATTTATCTCAAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : AAAATAGAAATTTCTGTATAACTGGTTGATTTTAATAGAAGTAAAAAATTAAATAAAATCAATACTCTACCTGAGCGATTTTATGGGCGTAATACATCTTATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATTATTTCCACAAAAGTTAAGAATTACAAAACCTAACACCGTATTCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATAGCTATACTTTAATCTCCTTAAAGAAATAGTTTATTAAACAATCAAATAAACATGAAAATTAAAATAAATCATTAATTTACTTGACAGGTAAACCGTAATGCATTATCATTTTAAACACCAAACACCAAACACCAAACCTGGCAAACCTATGTCTTAAATTTATCAGATAAACACACTAGTTGGATTTTTAACCCCACCACGTTTATATCTTCAAAGTTATTTTTCAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145673-145525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHC01000062.1 Gilliamella apicola strain Bif1-4 Gilliamella_apicola_Bif1-4_contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 145672 28 100.0 32 ............................ ATTTTGCATGTAACGGACCTCTGGGTCTTGCC 145612 28 100.0 32 ............................ ACGTTACCTAAGTTTTTTATATAGACATTATT 145552 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACCGCTGCACAAGCGGTTTAGAAA # Left flank : TTGGCGAGGGAGGAAAACTTGAAATCTTGGTAGCAGGCGGTAAACAGTATTTAATACCTGGTGAAAACGGGCAAGTATTAAGCAATCGCCAAATCACTTCTGGTAAAGGTGGAGGTTCAGTAATAAACATGACATTTAATACACCGATTCATCTAGACGGAAATGGCAGCATGTCAGAACAAGACGGACAGCAACTAGCTAAAAACATTGAGCAAGCTATCCGTGCGCAGATTATGAAAGAACAAAGACTACGGGGCTGCTAAATCGGCGTTGATTTTATAGATGAATTTTCATATTTTCACCAAAAAAACCGTCAGGAAAGATATTGATTTTATTAAAGTTTTTTGATGTTTTTGAGAGTAAACTAAACAACCCTTTTTTTAATCGCTTTTTTAATTCATTGAAAAATATAGATTAATTTAAGCACCAGAAAAAAGGGTCATTTTCGGAGAAATGGTTAAATTTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTA # Right flank : GCGACAAATGGACATACCCGGCCGATCATTGCGGTAAAAAAATCTACTCAATAGAAAATGGTGCAGAATCAACAGTAACAGAAATTGGCGATATTCCAAGTAATTACACTCTGTTAAAACCAAACTCCGAATTTGATAACTGGAACGGTGAAGCGTGGGTGTTAGATGAAAACAAACAGCATCAGCATTACATAGCTGTAGCAACAGCACAGAAAAAACAGCTATTAAGCGAAGCAACTACGCAAATTGATTATCTACAAGATGCAATCGACACAGAAATAGCAACTGATGAAGAAAAAGCATTGTGCGCAGTATGGAAAAAATATCGTGCGTTATTAAATCGTGTTGACGTTGATACTGCGCCAGATATCGATTGGCCAGAAAAACCACAGTAATTATAGATGTTCTGATCAGATTTAGTTTTTATAACACGGTCAATAAAACAAACGCTTGAGTTAATATTATGAATGACTTAATATTTTGACACTTTAATTTTATGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTGCACAAGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193888-193380 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHC01000062.1 Gilliamella apicola strain Bif1-4 Gilliamella_apicola_Bif1-4_contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 193887 28 100.0 32 ............................ GACGGTCGCATTACAAGCTCATTACCGTTTTC 193827 28 100.0 32 ............................ TTTTGGGGCATTTTCCTGCGGAAATCGGGCTA 193767 28 100.0 32 ............................ TTGAAGGACAATTACAAACTCGAAAATGGCAA 193707 28 100.0 32 ............................ ACCAACTCAACGTTACATCCGTACTCATCAAT 193647 28 100.0 32 ............................ GTACGTTATTCAGGTTAATGAAAAAACAGGTA 193587 28 100.0 32 ............................ TTGATTATTGGTAATAATGAAGATGAGGTTAA 193527 28 100.0 32 ............................ TAATAACGCATACACACAAATTAAGAATGCTA 193467 28 100.0 32 ............................ CTTGCTTCCCTTTTTTATCGGAGTGTTATTTT 193407 28 82.1 0 .......................TTTGT | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : CATCCAATAGCTCCTCTGAAAGCCCATCGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTATTGCAGTTTTTGATACCGTAGATGATGTACATAGTAGGTGATCCAACATTGAAAATAATAGCAAAGATTATAACAGTTATCGGCTTAAAGCGGCAAATTAAAGGGATTTATTTGTATTAATTCATATTAATACTCATATTTAATCTTAGTTGTTAAAGCCAAATGGTTACTAGTGAAAGTTTGAAAATTTTAAATATTTTGGATAGTGAGTTAAGAAATGAATTTTTGATCAGATAAAATCACTCATTTTGAAAAGATCAAACTTGTGCTGACCCTTTTTTTTAATAATAAATAAAATATAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTTAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGATTTATAGTATATCGGATTCTA # Right flank : ATAAAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATAAAAAATAAAATATTAAATAAAATCAATGCTCTACCTGAACGATTTTGTGGGGGGAAATATATCTTATAACATGGTAAGGTTTATATGTTCATTTTTCATGACGCTTAGAATGTAACAATAACTAAGTGAGGTTAGTGTGTCAAATAGGAATATTTGCAAGTTTGTGCTTTGTTGGGAACACAAATTTGAACATCAAAGCAAAGTTAAGATAGCTTTGTTGAGGTGAGAGCCATGGGGGATGAGGATATAAATCGAGCACATTTTGCAGCTAAAGCATCGGTTGTTAGGTAATTCACTAATTCCTTGATTGAGAAGTTATCACCAATATTCATGATATTCACAAAAGTTAAGACTTACAAAACCTAACACCATATGCTAATAAAAAATTACATAAAAAAACTAGCCAAGTTTTTTTTAAATGGCTATACTTTAGCACCTTAAAGGAATAGATTGATTAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 279629-279297 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHC01000062.1 Gilliamella apicola strain Bif1-4 Gilliamella_apicola_Bif1-4_contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 279628 28 100.0 32 ............................ TTCTTTAAAATATAAAACGGAAATTTATTTTT 279568 28 100.0 32 ............................ TCTGCAAAACTTGTCTGATCAATTTGATCACT 279508 28 100.0 32 ............................ GTGTTGGATTTAGTATGAGTAGAAATTCTATT 279448 28 100.0 32 ............................ ATTGCAAAAACTGCCAGTTAAAAGTAAGTTCA 279388 28 100.0 32 ............................ TGCGTTACGTTATAGTCGTTATTTTGACGAAA 279328 28 96.4 0 .......................T.... | T,T,TC [279299,279301,279306] ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TGATATTTAATTAACCAAAGTGGACGATTTTTAGGGTTATGCTGGTAAAACCATTCCAATCGACTTTCAACAGAAACAGGTACTGTATCGGCAGTAACTTGGCGACCAGCAATTGTTGAATTATAAACATCAACAATAAATGGTAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTATTGGCAATAAAGCATATTTTTTATAGTGAGAAAAATAATGTATAGTAATATTTCACAGTTAAAATAAAATCAACTCACTAGATGTATTTTTTGAAAATACATTTTAAAAATTGCCTCAAAATATAAAATCTAGCTAACCCTTTTTTTTAGCAATAAATTAAAATCAATAAAAACAAAAGGTTAATAATGTCTTGTAAAAAATGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCTAAATGGAATTATAGTATATTGGCTTTTA # Right flank : AAAATAGAAATTTCTGTATAACTGGTTGATTTTAATAAAAATAAAAATTAAATAAAATCAATGCTCTATGTGAACGATTTTATGGGCGTAATACATCTCATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTACTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATTATTTCCACAAAAGTTAAGACTTACAAAAACTAACACCGTATTCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACCTCTTTAAAGAAATAGTTTATTAAACAATCAAATAAATATAAAAATCAAAATAAATCATTAATTTACTTGACAGGTGAACCGTAATGCATTATCATTTTAGACACCAGACACCAGACACCAGCACTGGCAAACCTATGTCTTAAATTTATCAGATAAACACACTAGTTGGATTTTTAACCCCGCCACGTTTATATCTTCAAAGTTATTTTTCAAATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //