Array 1 31622-31829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31622 28 100.0 32 ............................ TCGGTTGGCTCGACTGGAGCTGGAGCGGGGAG 31682 28 100.0 32 ............................ TGATGTTTCCCAAATTTATAGTTACCATTTTT 31742 28 100.0 32 ............................ TTTTTTGACAAATGGTACCCGTCTGCCAATTC 31802 28 89.3 0 ....................A...A..C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : GACATGCCTTTGTTTTTGGCAATCAAAAAATCAATATTCATGCCAAAAAAGGTGAGTTTCAACCAGCGGTATTCCTCCCAGAATATGGAAGCCAAGATTTTTGTTTAATTGTTGAAGACGATATTGAAATCGTAAAAAAAGAGTTCGAAAAAAAGGGCTATCCCCTTGTAGAAGGGATTGTTGAACGACACGGTGCTAAAGGTAATATCAAAAGCCTATATCTAAGAGATCTAGTTGGAAATCTTGTCGAACTAGCTAATTATTGTAATTAAAGTTAATACTGATCGACCAAACTTAAATAATTGGTTATCTAAAAATAAAAATTTGATGAACGGGGTTTTTGAAGACTAAAATCCATCCCATCACTAACCCTTTTTTTTGACTTAAGATAAAATATTTAAAAAATCAATAGGTTGAAAAATGGCTCAAAAAAAGGTTTTTTTTTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : CTATAACGCTCGAAATCCACCAAACTAGAAACGTTTAGCAAAGGAGTTTTTTTAAGGTGAATAAACTTATCACATGCTATAATTGTTTTCACTCATAATTAAACTTTACACCTATTGTGAATAATAATTCAATTGACAACAAACTAAATGAAAAAATGGTGCTTATTTTCAAAGCACTCTCTGATCCAGTTAGAATTGAAATAATTAAATACTTAAAAAACATAAGAACTGAGGTCATTTGTGGTGAAATAGGCCAAGCGGTTGGTATCAGTAAACCTTCGGGAACTTATCATTTTAGGTTATTACAACAAGCTGAATTAATTAATGTAAGAAAAAGTGCTAGAGAAAAATATATAGGACTGAATAAATCAATATTTGATAAATATGTTACAGGCTTTTTTGATAGTCTTTAATATATTTAAATGTTGATTTAATCTTGAGTTTACTACTGGATGTTTATTAACTATTATAATTTGCGCCTTGTCGTTAATTTGAGTGAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 358933-359140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 358933 28 100.0 32 ............................ AACAAACGAACCAATTCCGTAGTCCCCAATTT 358993 28 100.0 32 ............................ ACAACTGCAGGCAGCGTTTAAATACCGCGAGG 359053 28 100.0 32 ............................ TCCCGTTCAGTTGCTGCTAACGGCAACCGCCA 359113 27 92.9 0 ........................-..T | A [359133] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TTCCATATATTACCTAAACCCACAGCAGAACCGGCAGCTGCAAGCATAAATCCCATGCGAGAGCTCCACTGTGAATGACTTTTCTTCATAGTACCTGTACTCATGAATCTATTTTCCCTAGAGTTTTGATTAAATATTTAATTTTAGTTTTAGCAAAAGCCTAACTATTTTTTTATTAGATAAATAAAATGCTAAATCATGCCATGAAATAAATTTATAAACAAGAAAACATTATCATTTATAACGATAACCAATAAAAAATTAAATCGTTAACCTTAAGTTTAATCGTGTTTTGAAGTGGTCAGAGTAAAAAACGAGCAATAAAAAGTTGAGGAATGCCGTTTTTGGCGATTACATTTAGACTATTGCAACCCTTTTTTTTACTTAAAATAAAATAATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTATTAGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCTGGCTCTA # Right flank : TTTTAAGTCATTACATTATTTTGACGAAAGAGATTAAAAATCATGTCAAATATGCCTTTTTGACAAGGCTATGTATTGTTCTAATACATATAATAGATAATGTATAAATACTTAACGTGAATGAACTATTCATGTAATGACTAACTAGTTTCGCTGTCGATGGTAAAAATTAGTGTGTGTAACCCCTTATTCAAAATATCCTTTGTACTAAAATCCCCTCAGAAATTATTTAAACCTCTAAACGTTAGTGAGCTAAAACAATTCAATATGACAAAAAGTTGAGAAAAAGGGAGCATGAAATCTTTGATATTGCTAATCATCAGCCCATCGCATATATTACATAGAATATTTACTTCTCTAAAAAGAATAGTTATGACACAAAATATCGATTTGAACGAAATAGATAAGTTTGCAAAACTTGCTTCGCAATGGTGGGATCCCAACGGCCAATGCAAACCATTACATATTATTAATCCATTACGAGTAGATTATATAAAACA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 366316-368144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 366316 28 100.0 32 ............................ GTGGAAAATATCGATTGACCGTCCCCCGTAAT 366376 28 100.0 32 ............................ GGGATCGGTGGTTCTGTCGAGATTCCCGTTCA 366436 28 100.0 32 ............................ GCCCTCGCAACGTCGCGTTTATGTATATAGTT 366496 28 100.0 32 ............................ TGATTCCCAGCGTTGCCATGTCCTCTCGTCCA 366556 28 100.0 33 ............................ CGCCGAAAATTTCGCGGAAAAGGATTAGACAAT 366617 28 100.0 32 ............................ AACCAAAACCATACAAAAACGGGCGAATATTT 366677 28 100.0 32 ............................ AACAACATGTAATGCTGAAATGATTGCGCTGC 366737 28 100.0 33 ............................ TCACTTAAAAACTCTCTGATGTAGTAATTTATT 366798 28 100.0 32 ............................ TCTCTCGTCTGTTGGTTCTGGTCGGTCAATTT 366858 28 100.0 32 ............................ AGAAGCTGGCACTGAGATTTGGACAGATTTTG 366918 28 100.0 32 ............................ ATACTGCCCGCCTGAATAGTGTCGGGTTTAGG 366978 28 100.0 33 ............................ TGATCTGCCGTTTTCAGATTACCGGCACTATCT 367039 28 100.0 32 ............................ TAAACGGAAAACGCCCGCTGTATCAGCTCGAA 367099 28 100.0 32 ............................ TACGAAAAACCATAGGGGGCTTTTTGCTTGGA 367159 28 100.0 32 ............................ TATCAACGTTAGCCGCAGGTGTTATCGCTAGA 367219 28 100.0 32 ............................ GATATCAGCGGCATTACCACGCACATGTTGAC 367279 28 100.0 32 ............................ ACTGGCAAATATTGGTAGGTTGCGTGTAAAAA 367339 28 100.0 32 ............................ GAGCCGGGATCTGAGGTAGAAATTGGGTTTAT 367399 28 100.0 32 ............................ AAATATACGGGTAAATTCGGCATTGGTCGTTA 367459 28 100.0 32 ............................ GAAAACTTGGCGACCAACATCGATTTGCTATT 367519 28 100.0 32 ............................ GCTACGGCGGGCAATATCAATCAGTTTATTAA 367579 28 100.0 32 ............................ AACCCGTAAAAATATCAATTATCCCAGTTTTA 367639 28 100.0 32 ............................ GGAACTAGCGGACGGGTACCATTTATCAAAAC 367699 28 100.0 32 ............................ AGATCGTTTCCAAACGTGCGCAGATATTTAAT 367759 28 100.0 32 ............................ AACTGTTTCGCCGCTGATGTATTCAATGTTGT 367819 28 100.0 32 ............................ GTCGTGATGAAATCTGCCCGATTGAATGGCTG 367879 28 100.0 32 ............................ TGACCCGCCTAATTGAATTGTCGTATCAAACC 367939 28 100.0 32 ............................ TCACTGAAGCAAAACAGATTACAAAACAGATT 367999 28 100.0 32 ............................ TAATGTGGACAGTGCCGGGAATAATTCGATGA 368059 28 100.0 32 ............................ TCACCTTTACTAAGCACATGATGTCTATGAAT 368119 26 82.1 0 ..........T........--.G.C... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.4 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : ATCAGTTAGCTCTAAATATAAAAGTTTATTTCTAGCAAATCAGATTGGAGTATTTCATTTCGCGACATGAGCAATGTGCTGACAACAGAGAGAGATTAGTATGGCAAACAGGGATGTTTGGCAAGGCAGTAGTTTGTCAGGAACAAATACAGCCGATGCATTAAAGCGATCGAAGGCGGAAAGGCAGTCACATCGTAACCATTTGCGAAGTCACCGCGGAAGTTGGTAAAGAGAGTTCGCTCAAATGCTCTTTACTCCGACATAATCACCATATAAAACTAGCAACTAAACAACAAAACGTCCGAAATTAAAAGAACAAAAAAGTTGAGGAAAGGGGTTTTTTGAAATTTAAATTCGTACCCATTTCTAACCCTTTTTTTTGACTTAAAATAAAATGATTAAAAATCAAAAGATTAAAAAGTTACTCAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AAGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATCACCTAATATATCTATACTTTTTTCTGCAAGGATTGCATATTTTTAGATAAAAATTATAAATTAAAGGATTAAGAGCATGTTGAGATACCCTTATTTAGGCGCTATTTCTAATTTAATTGTTAATACAACATTGACCAGTAAAAAAAATATATTGAGTCACGCCCCTTCAATACAGCAATTATTCATTAATCAGCCAATAAAGCGAAATTCAACGTTTAATAAAACACTACTTAAATATTTATCCTCATTTTGCCAAACAATAGTGAAATTCTTGAAAAAGATTTGTTTATGTTCTATGACTTTTTCAACTATATTTAGCCCTGTATACGCGTTAAGTGCATTTACCACAGAAAGTATAAAAGGTAGTGCACCATATTTAACGCTAGATGATGGTGTTAGTAAAATAACGAGTACAGAAGAGCTACTGGCAATTAAATTACCTAATGGTACTGTGATAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 439927-440433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 439927 28 100.0 32 ............................ AGGTGCGCCATCAATCCACGTCCCAGAACCCA 439987 28 100.0 32 ............................ TGACCCAACGACCGTATTTTGCGATTAGATTT 440047 28 100.0 32 ............................ TTGATATGGGGTAAAAAAGCCCCCCTACGAAA 440107 28 100.0 32 ............................ ACAGACGGAAACACAACCAACGGTTGGGTACG 440167 28 100.0 32 ............................ TAGGCACGTTTTATAACGAACAAAATCCAGCT 440227 28 100.0 32 ............................ TGTTCGCGTTTTTTCCTTTCTTCCTCAAGTTG 440287 28 100.0 32 ............................ CAGATCCGAAAGTGCGTTGTAGAAATTGGATG 440347 28 100.0 32 ............................ GATTGAAGAAATTCAAAATACTTTACAATCTT 440407 27 89.3 0 ................C...A...-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : TTGTTTTTATAATATTAATGCTTTATATGCCTGCACATCTGAATTTGAAAAATAAAATCCAATTTTATTCTTCTTACTTTTTGTACAGTTTTTCTGGGATAAATTTGTTGTTTTCTTTAATATTTAGTCGATATTTTATAAAGATTTTTTATTCAAAAAGATAGTTGTTTTTTGCTTATTGGATAAAAGAGCAAAGTATTCAATTATTCTAAAAATGCATACCATTAATTAATTGAGATTTCTAGGTAAATTAATTTAATAATATATCTCATTATGAAGAAATGATTGACCATAGAGTAAATAATAAAGGTCGATTATAAAAAATTTGAGGAACGGGTTTTTTGAAATCTAAAGACATCCCATCATTAACCCTTTTTTTTACTTAAAATAAAATTTCTAAAAAAATCAATACATTAAAAAATGGCTTAAAAAAAGGGGTTTTACTGGCAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATGGGATTCTA # Right flank : ATATTAATTATTTCTAAAAAGATAAGCAAAAGCATTTCAAAAAGCTAAAAATCTAAATTAGTTATAGCGTTGTCAAATAAAAAACCGTTCTAGTTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATGCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAACTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGTTCTGTAATAATGTTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAATGAATAAATCAATTCTTGTGCTCCGGTAGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCAGGGATGTTATCACCAAATACTTGTTTGATTGCCCATAATTCTTTGACATCACCAACTGGAGTTGAGGTACCATGAGTATTGATATAATCAACTGGTCCATCAAGATCTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 789610-788678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 789609 28 100.0 32 ............................ CAACACCAACACCGTTACCTATATCTCGTGAG 789549 28 100.0 32 ............................ AATAACGCGTTTAGTCTATCCGATTTGGTCGA 789489 28 100.0 32 ............................ TGAACGGGAATCTCGACCACGCCACCTATGCC 789429 28 100.0 36 ............................ TAGAAATAGCATCTACTGACGCGAGGCGTTCGACAT 789365 28 100.0 32 ............................ TGCAGAGGAAATGGATCGGGCATTAAAAAACG 789305 28 100.0 32 ............................ TCGCCTGTTATCCCAACCTCGAATAAACTCAC 789245 28 100.0 32 ............................ AGGATAATCGTTCATTAATAGATGGTTTCTGT 789185 28 100.0 32 ............................ TTTGCAGCCCCCGTTTCACTGCGCATAACACC 789125 28 100.0 32 ............................ AATCATCTTTCTTTAGGCTGCTAAGGGCTAAC 789065 28 100.0 32 ............................ TTCGCAATCCCCGCTACATAGTGAATCTTTTC 789005 28 100.0 32 ............................ TGCTCACGATATTTATGTTGAGCCGTTTGGCG 788945 28 100.0 32 ............................ AATTGAAAGTGAGTTCATTAAAATTCATCGTT 788885 28 96.4 32 ..........................C. TCCATGCCTCTTATAAATACACCTCGCAAATC 788825 28 100.0 32 ............................ TAATGAACATGTTTCTAATGACGGCGAGCGGG 788765 28 100.0 32 ............................ AAAGGCGTACAAAATGCACAAAGGGCATTTAA 788705 28 78.6 0 ...........CA...T....CA.A... | ========== ====== ====== ====== ============================ ==================================== ================== 16 28 98.4 32 GTTCACTGCCGAGTAGGTAGTTTAGAAA # Left flank : AAGCCAAGTATAGATTTAACGCAAGTATAAATACATATTATTTTGATGCTTTTTTATCGAAAATAAAAGTTTTTTAAATCTGTTTTTTACAAAATAATCATGATCAAATCATGCTCGCAATTTTTTATTTGATGATGATTGATATGACTTATCGTGGTTATATGGATATTAGAAAGAATGCATTCTCAAATAGAATTAATAAAGCCTGCATTATGAGCACTAGATTCGAGTTTTAAAGACTCTTTTTTACTCAATGTCGAACTAGCGCAAAATCAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATTGATAAATGGAATAATGTTTTGTCTGTAATTAGACAACATTAGTAAAACAACCCTTTTTTTACCGACACTTATAATTCATTTAAAATCAAACAAATATAAATTGGTGTGAAAAAAGGGTTTTTAGTTATAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTT # Right flank : TTCTGTTGAAACAGTTTATTAAAAATGTCTAACTCATGATTTAGGCATTTGTCACTTTTTGACTGCTGCAAAATGATGAAATTTGCATTTAAAAATTTGAGGAAAAGGGTTTTTAATAACCGCAAATTTAGCGAAAAAATTAAATGTTAATTCCGAAAAACAAAATTGTAACTTAAACTTGAACGCTTAAGCAGATCACTATATTATACGCGCCTTAAAATTCATCAATCAGCCAGATACTTGAAAGAGTCCTAATGTTAATTAATGCCAAAGATATTCTTGAAAAATTAAATCCACATAATAAAGTAAACTACGATTCAGTTTTGAAAGAGGTGATTGCTGATTGGCAGTTAGCATCAGCACGACCAAAGTTACTAATTCATAGTTGCTGTGCACCATGTAGTACTTATGTACTGGAGTATTTGGCTCAGTATGCAGATATTACTATTTATTTTGCTAATTCGAATATTCATCCGCGAGTAGAATATGAATATCGTAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 1307420-1306852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1307419 28 100.0 32 ............................ TTTTCCTGTATCCCCTCAACGCCCAGAATAAA 1307359 28 100.0 32 ............................ GACTGCAACAACCGTTATAGTCAAGTCAAATC 1307299 28 100.0 32 ............................ TGCTGCAGTTCTGCTGGGTACCAGTTTTTGTA 1307239 28 100.0 32 ............................ AACGCAGGATGACGGGCGAGCCGAATTGCAAA 1307179 28 100.0 32 ............................ TAAAAATCGGGTTACGCAGGCTGCAATCAATT 1307119 28 100.0 32 ............................ AACAGATGGCCGCCACCACGTGCGGCTTTTAC 1307059 28 100.0 32 ............................ ACCTGGAGAATCAATTCTCAAAACGATGGACT 1306999 28 100.0 32 ............................ TTAACGTCAATATGCAAATATTCCCCTATATT 1306939 28 100.0 32 ............................ TATTATAACAAAATATTTAAAATTAAATTTCC 1306879 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCAAGGCTGCATAAGCCGTTTAGAAA # Left flank : CCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAACAAAATGGTTGAAAAATGGGGCAGCCTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACTGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTGAAGGAACATTTAATAGTTACGGACTCAGCAAAACAGCAACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTGCCAATAATTAACAATATTAACGGTACAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGTTTTTAAAACCTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAAATTTTTAAAAATCAATTAATTGAAAAGCCACCAAAAAAAAGGGTTTTTGCAAAGTAAAATAGACTTTGCCTTTTGCACAACAATGTTTATAGTATTTGGGGTTCTA # Right flank : CAACTTATCAAACGCCCAAAGTTCAAGGCTGTAAAAGTGGAAAATTTTGAGGAGCGGGGTTTTTAAGACTAAAATCCATCCGATAAATCACTAAAATTAGTTATAACATCAGCTAGGGTCAATAATAAAAGTTTATTTTTATCAATTAGTTTAGTGCTTCTCATTTAGCGACATCAGCAATGTGCTGACAACTGAGTGAGATTAGCATGACAAACAGGGATGTTTGACAAGGCTGTTGTTTGTCAGAAACAAATCACAGCCGGTGCGTTAAGAGCGAACGATGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGTTGGTAAAGAGGGTTTGCGCAAACCCTCTTTACTCGGACGTAATCTCCGTATAGAACTAGCTATTAAACAACAAAACGTCCGAAACTCACCGAATAAAAAAATTTGAGGAGCGGGGTTTTTTAAGAGTAAAATCCATCCGATAAATCACTAAAACCAGCTATAACATCAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 7 1320573-1319465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRC010000001.1 Gilliamella sp. W8145 NODE_1_length_1682313_cov_159.571697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1320572 28 100.0 32 ............................ AAGTAGCGAATTTGATAGTTGGGATGGTGAAA 1320512 28 100.0 32 ............................ ACGTTGGGAAAAACGGAAAACTGCTATTTGTC 1320452 28 100.0 32 ............................ AATACTAGGAGGGATGATTAATGTATCTATTA 1320392 28 100.0 32 ............................ AGTACAGGGGGGGCCGAACGGAATCGATAATC 1320332 28 100.0 32 ............................ TGGTGCAACTATCACACCGGGTAAAACGCGAT 1320272 28 100.0 32 ............................ AGCCGAAATGCTCACATCAGTCCAGCCACCAA 1320212 28 100.0 32 ............................ GCGTGGTCCGGGCACTGCAAATCTATATTTGT 1320152 28 100.0 32 ............................ GATCGCGATTTTACATTAAATGCCGGTTTTGA 1320092 28 100.0 32 ............................ CGCGACAAATTTTTTACGTCGAATTGTATTAC 1320032 28 100.0 32 ............................ AATCATCTTCTGTTGCAGCAGTAGGCCTATTA 1319972 28 100.0 32 ............................ ATATAAATATCGGCACTCGACGCCCTAAACGA 1319912 28 96.4 32 A........................... AATGCTAGACAAAAAGATGTATTCATTGAATT 1319852 28 100.0 32 ............................ AGAATCGGACAAAAGACCAGCTATTAATATAG 1319792 28 100.0 32 ............................ AGAAGAAGGTACCGAAGTTGAGATTGGTTTTA 1319732 28 100.0 32 ............................ TGCAAACAATAAATATGACGACAGCGTTATAT 1319672 28 100.0 32 ............................ GACTGTAAATAAATTCATGTTTAAGAAAAAGG 1319612 28 100.0 32 ............................ ATCCCAAACCTTAGTTGATCAGTGATCAAATT 1319552 28 100.0 32 ............................ AAATTACCAATTTGAACGACTAACGCGCCAGT 1319492 28 82.1 0 ...T................C....TGG | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCAACGCCGTATAGGTGGTTTAGAAA # Left flank : GTACTCAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGCGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATTGGCGCAAGATTAGGTGCAAAAATGGTTATAGCTAAAGGACGAAAATTAATAAGACCAATGTTAATTACCGTTTCAACCATTATGAGTTTCAAATTAATCTATGAAAACTTCTTTTAATCATCGCTAATAAAATTTAGAATCAGTTTTAGTACAATCAATAAGCTAACAACCAAGAATACATTAGCCAATTAAAAACCCCGTTCCTCAAAATTTTGAGGAACGGGGTTTTTGCATTTCCCAAAGTCTATATTTTAAATCAATAATAAACCCTTTTTTTTTACATTAAAATTAATTTATTAAAAATCAGAGAGTTGAAATTAACCGCAAAAAAAGGGTTTTTTATATCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : TATTGCTAAATAAGCTAAAAAACTGAACTCACATGTTCAGTTTTTTTGTATACTAACTTTTTGTATTCACTCGATAAGAGAAAATATAGGCTATAACAGCAATAATGCCAAATACAAGAGATAGAAAAAACATTGTCTGATAGGCGCAATTTACTGAAATTATTTGATCTAGAGTTAGGTTGATTAATATTCCTGATAATATGCTTCCAAATGCACCTCCAATTTGCTGTATCACACGAGTGATAGCACTTGTATCCTTAATCTGATTTTTTTCACAAAACTCAAATGGAGAAGAGAGAACAGCAATCGTTGCAACACCTAATCCGGAGCCTCGAACAGTAAAACCGATGATTTCAGAGGCGTTTCCACCTACTTGAATTATTAATATACTTATTGCTGATATTATTAGACCTATACCAATAATTAGAAATGAATTTATCTCACTTAAAGATTTATAAATAAATTTTCTCGCCAACCAAGCTCCTACACCTTGTAAGGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //