Array 1 11418-12511 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000011.1 Halogeometricum borinquense strain N11 Scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 11418 30 100.0 35 .............................. GTGGAACAATCTCAAGGAGTTACCAACGGGACAGA 11483 30 100.0 36 .............................. TTGGATTGGCTGTTCGGTCTGCTGTGCGTCCAGTGT 11549 30 100.0 36 .............................. AAACAGTCGTTCGGCCACGTCCTCACCCTTCGAAGT 11615 30 100.0 37 .............................. GAGCCAGTTAACCATGGCCGGGTATATCCACAACTCG 11682 30 100.0 37 .............................. CCGTCGGCATCTCGTCATATGCATCCTGGAGCTGCTC 11749 30 100.0 36 .............................. AGGTCCGCATAAATTGGGAGGCCGCGCTGACTTTGC 11815 30 100.0 37 .............................. CAGATTCCGTGCAACCACTGCCAGCGTTGCGGTGCTG 11882 30 100.0 36 .............................. CCTTCGGGATGGCACCGTTCTGAAGATTCCGAGATA 11948 30 100.0 37 .............................. GATTGGTGCCGCTTGAACTGCGCCATTTTCTGAATGG 12015 30 100.0 35 .............................. GTCGCGGTAGTCGTCGCTAATCGTGACACGTCGTT 12080 30 100.0 36 .............................. TTGCGCGGTCGCGGAAGCTATCCATGAGAGATGCCT 12146 30 100.0 36 .............................. ATAGGCTGCTCAGCTCCGAATCGTCGTCCGTCACAA 12212 30 100.0 35 .............................. AGTTGGAGTTTGTACCAACCACTTTCGCGCACCTA 12277 30 100.0 42 .............................. AACCTAAAACAGAACGCACCGAATCCGCTGTTCTCGAATGCA 12349 30 100.0 36 .............................. GTCGTCTATCCCGTGTACGCAGCCGCCCGACGCTAC 12415 30 100.0 37 .............................. GCCTCAGGATATAGCCGACGCCAACGATCGGCACGTG 12482 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 17 30 100.0 37 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CTGTAATGTCCCTTACTGTGCTGAGTAGGTGTGATTTCGTTGGCGTGAATACCTCCCTCTCATTCGTTCGCTGAGAAACACACCAACACCCGACAAGAGAAAAAGACGAACCATTACTTGCATTCCCACTTTCATCAACGAAAAAGTAGAGGATTCGAGACATTCTCAGCGAGGGTATCTTAATTACAGTTATGTAAGTATATAAACGGCTCGCGTATGGTACTCAGCGTCTATCCCCGGGGCTACGGAACGCTCGCGTCCTCGACGACGATATCACTCCCGATCGGGAGTAGTGCCGCACCGACGCGAAGAGACTGCTCTGGAGTGAGATCACGCGCCACCTGCGTGACGAACTCGACAAACCGTGGGATGGCCAACCTCTGTCGATCAATCCGTCGAGTACCATCGACCCCCGGGGGGTTTTGGGGGTATTGGGGGTCGACGGAAACTACTTGTGTTAATCGCTCTTCATAGGTTCTGTGTGCCCGTTATCGGGCATG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 309667-308783 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000003.1 Halogeometricum borinquense strain N11 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 309666 30 100.0 34 .............................. ATGGAGTGGGACGCTGAGAAGCGCCTCCTCACGT 309602 30 100.0 36 .............................. GATGGTTGCTACTGTTCCGAGCAGTGTTTGTTTGCC 309536 30 100.0 37 .............................. TGCACACGTTTGTTGCCCATCATATCCCCGACAACAA 309469 30 100.0 36 .............................. GCGAACCTGCACGCCGCGCAACCGGGCGGTTTCGGC 309403 30 100.0 34 .............................. AGATCGGGCCGGGTGATCAGAAGTGATCCCTCTG 309339 30 100.0 37 .............................. GCATTTTTGAGGTATTCGGCCGTCCAGTGATCTCCGT 309272 30 100.0 37 .............................. AACGCTCTCCCAACCGCTAACTCGATGTTCTCCGTGC 309205 30 100.0 36 .............................. ACATCGTACCACACTCGGGAATCTTAAGAACCTCTA 309139 30 100.0 35 .............................. TATGGTCAAATCTGACGCTTTCCATGCAACTAATT 309074 30 100.0 34 .............................. ATGTCTGAAGGCGAACACAGACTGGCAGGCGCAG 309010 30 100.0 36 .............................. GACGATGAGACAAGATCAACGTTGTTGAGACTGTGG 308944 30 100.0 36 .............................. AACCGGTTAGACGAGCTGGAAGATCTCGGAGTGATC 308878 30 100.0 36 .............................. GTATCAATCCCCTGATTAACTTGACCTCGTAGCACA 308812 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GCAACAGTCCTTGATCGGAGGCTACGAGACTGCGGACGTGTTGGTTGCGACAACTGATACAGAGATTGACCAGCTGAATCGCCTCACAGAACTGTTTAACGATGGCAATCCTAAGGCGTACACGAAGCTCGATACCGCTTCGAGTATCCGAGTCAGCCTCCCAATGAGCACGCTTGAAGAACTCCCCGGAGTCGTTCGTATTGATGGGAAAGAACGGACTGCAGACGGTGTGCAGGTATTCCGCTATGCAGGACAGGGCACCCTCCAGTATGAATTAGACAGTGGTGGACTCCGCGGAAAATTTCACCACATACGGAGACACAGATGATCCAGGAAGCCGATTTACCTGAAGTTGTGCTGGTACACTCTGAGTAACAGTACTCGAAACACTCTTGCAGGTTTCCGTCGACCCCCCGGGGGTTTGGGGGGTATTGGAGGTCGACGGAAACATTGATCTGAATACCGTGTCTATATGCCTCTATGCCCGTGTATTCACACGG # Right flank : GCGTACCGCATGTATTAGACAGTACATGAGAGTAAATTGAGATACAGAAGAACAAATTCTAATACACGTGGTCCCTATCTACCAGATGGTGCGTCATAGGTACCGGCGTTTGAAGCCCGTCGCACCACTCCTGCTATCCCGGTAAGACGTGGTCCGAACGAAGCACAGTCAATTGTGTTTTCGGATAGGTCCCACGTGGAAACGGGGGTGGAGGCGGGAATGAGTACCTTTTCACTACTGCTGATCAAGCCACGTAGCGATATCGCTACACCCGATTGCGTTGAGTCGGCCGACAACAGGCTGAACCCCATCGCTCTGGGGTGCAGGAGCGTGAGTTTTCCCAAAAATCCCGTGAAACCAGCAGCTCACCCGTTCTCGAACTGAACTCGCGTATCGTTGTTCGTACGTTGCTTGCTTGACTTCTGTCATTGATCCTCGTTTGTCTGCGAGACGATTTAAGAACTCGTCCCACGTTTCGTCCTCTCGTTTCAATTCTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 318075-317712 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000003.1 Halogeometricum borinquense strain N11 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 318074 30 100.0 37 .............................. ACTTCGTCCGGGCCGTCGTCAAACGGGCCGTTTTCAG 318007 30 100.0 37 .............................. GAGAAGGACGGCACGTTTGCCGACCCGAACGGGTCGA 317940 30 100.0 36 .............................. ACACTAACTGAGACTGGTATAGGTTACCTTAATGAA 317874 30 100.0 35 .............................. TCGGAGTTTGGGAACATAGTGTAGTGGACTATCAT 317809 30 100.0 38 .............................. GTCGGTAAACTCCTCGCAACCGCGAAGATGATGAGCGC 317741 30 93.3 0 ..................C...G....... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CCGGGCGACCTTTTACGACCCCGTACTGTTCGCCACCACACCGAAACAGATTCTCGCCGCCTCTGCGATGAACGGGTTCGACAAAGGCATCGAAACGATTTATGCTCGAAACGCAACGCCGATAACGGACGCAACAGCGGTTCGAGGGCTCAAACTGCTCGAAGGTGGTCTCAGACAACTCAACGAGCAATCTGTCTCCGAGAAGGCTCTCGAACCGGTCGCTCAGGGACTTCTCCTGGTTCAGTATGGGATTTCGAGACCTGGTGAGACGACGCTGTCGATCATCCACGCGTTCGGCCACGCACTGACGCGCTCCTCTGCTGTTCAGCAGGGGGCTATGCACGGAATCATCGCGCCGCACGTACTCAGCTACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGTCAAACGGGCCGTTTTCAG # Right flank : ATCGTCATGAAACTCGGTCCGTTCATCGGCTTCAAGTGCCAGACGAACGGCGATGAATGCAGAATCGTCCTCGATTAACTCCGTCAAAAAAGCCCGCAAGAAACACACCTGAGAGAGCTATTTATATGATTTATCCAACACATACAAGTAATGACAAACGAAAATAGAAATTGTGTTACATAGCGACAACCAGAGAAGAGGGGTGGTATGAGGCGTGCGCATCGAATTAGCACTCGACGCTGTCGCTGACGCTGCCTACGACACATCATACCACCATAAGGTTAGAGGGAGGATCTGGCGCGGCCTTGAAGGCAACGACGCCTTCGCCGAGGGTCACGATACCGATCACGGCATCGGATTCGCGTACTCGAATGTATTCCCGTGGGGACAGATCCAGGAAGGTGACCGCCGGTACATCCGTATCGCGTCACCGCGACGAGCGCTCTTAGACGATCTCATTTCCCACTTCGGGGGCGAGCGCGCGTTTGATGTCGGTCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 568614-569962 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000002.1 Halogeometricum borinquense strain N11 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 568614 30 100.0 37 .............................. GAGACGCAGATATAGGATTCGACCGAGTGCTGAATGG 568681 30 100.0 35 .............................. TGCGTTGTGACTATCACGATGTCAACCACGAGAAA 568746 30 100.0 33 .............................. CAGTATTGGAGTCTGCTTGAAATGCCAACGAGA 568809 30 100.0 37 .............................. TCGGTTCAGGAAAGGTTTCAGGAGACGTAACAGCTTC 568876 30 100.0 35 .............................. GACGCTGCTCTCGAACTCGGTGCAGACTACGAAGA 568941 30 100.0 35 .............................. AGGTCCGGTTCGTCCTCTCCGGGGTCTGGGACATA 569006 30 100.0 39 .............................. TATTCTACGGCTTCGCCGGTCTTGATGACCTCGATTTCG 569075 30 100.0 35 .............................. AACACCTCCGGCGAGCTGGAGCACGACCACTTCGT 569140 30 100.0 35 .............................. AGGTGGTCGTTCGCGCTGCCGTCGCCGGTGTCCTC 569205 30 100.0 37 .............................. GCGTTGATACTATCCCACTTGGTCCGGGACAGCGTGT 569272 30 100.0 37 .............................. GACCTGACCGACAGGCAGAAGGAGCTGGTATCGAAAC 569339 30 100.0 36 .............................. GTTCCGTGACCAGGATGGTGACGGTTACGCATGGTA 569405 30 100.0 37 .............................. AGGAATCACCCCATGCGAGGAGGAGAGTGGACTATGC 569472 30 100.0 35 .............................. GCCGAGGACGCGGTCGAGGCCCGCCGGAAGTGGGA 569537 30 100.0 37 .............................. ACCGCAGGTGAAGCCCTTAGCGCGGGGGAACCCGTGT 569604 30 100.0 37 .............................. ACCGCAGGTGAAGCCCTTAGCGCGGGGGAACCCGTGT 569671 30 100.0 35 .............................. TTACCCCCGCCGAGTTTGAAGTTAACCACCTTCGA 569736 30 100.0 36 .............................. CAGAGTGCATCGCCGCCAAGATCAAGGACGAGCAAG 569802 30 100.0 36 .............................. TAATTGAGAATGCTGGCCGGAATACCTCCCCTTAAA 569868 30 100.0 35 .............................. GGGCACCTTAAAAACGCGTCCGGCGAGAAAATCCA 569933 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGATACTACTATGAGTTTCACAGGAGGACCGACTCATGTGGCTAGAAAGCGCGCTGACTGGATGAGACCCGTAGACGAGCACATCCTTGAGGTGATGCGCGATGAGGGGAATATGACACCGCAAGCCCTCGAATCGTTGGACGTGACTGTTGCAAACTACGCCAGCAATCGACTGTCCTTGATGACTAGATATGGTCTCGTTGAGCGCGTCGTTCAGGGTCTCTACCGTATCACCGAGACCGGTGAAGGTTTCCTTGACGAGGAAGTTGATGCCTCGACGCTGGAGCCTGTCGAAGACGACAGCGAGTGACTGTCCTTTCTGATGGTTNNNNNNNNNNTAGGCGATGCTAGCGACATCGAAAGGCGTGACTGGGTAGTGTCCGGATTGGCCGGACGATATTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGGGGGTCGACGGAAACATTGATCTGAATACCGTGTCTATACGCCTCTATGCCCGTGTATTCACACGG # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACGAGCGTACTCTTCGGGTCGTCAGGCTTCTCTTGGAAGTCAACGACGCGGTCACCGTCGAGTTCGACGAGACCGTAAGATTTCGCTCGTTCCTTCGAGCCGACGTCGTAGGCGGCGATACACGGCGTCCGCTTTGCCTCGAAGAAATCAACGAACTCGGACACGTCGAACGAGAGCAGGTTGTCACCCGCGATGACGATCAGATCCTCTTCGACGTTCTCGCGGTCGATGAGTTGTTCGAGCGCGCCGACGACGCCGAACTTCTCGTCTTCTTCGACCGTTTCCTCGACGGAAACCGTCGGCTTCTCGAACGGCGAATCGGAGAGATACTCCTCGAATGACTCCTCGAACCGCTCGTTTGTGCTGACGAACACCTCCGAGATTCGGTCATCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 639906-640394 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000002.1 Halogeometricum borinquense strain N11 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 639906 30 100.0 36 .............................. GCTAAGCCATCGAATCTCGTTGAAACCCGGTTAGGA 639972 30 100.0 35 .............................. CAGACGAACCCGAGCGGGGTGGGTCGCTCCCTCCC 640037 30 100.0 35 .............................. TAGGATAGCCGTACGAAGGTCTACAAATTCGACAT 640102 30 100.0 36 .............................. GTGTGTTGATGCATCGCTATCTCCGCATCTCTTTCG 640168 30 100.0 37 .............................. GGTTATACCCGATGTTGTAGGCAAGCGACTTCGCAGT 640235 30 100.0 35 .............................. GTCTGCCAACGACATCGGAGTTGCAGCTCCCTCTT 640300 30 100.0 35 .............................. GCCTGTATGGCACGTGCAGACTGGGCGAGACCAGA 640365 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GTGTGAATACGCACGTCACCGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATGATGCGCGCCACGACTGCGCTGGACGGATTTAGCGTTCCGGCGCTCGATATCTTTCGGAACTTCAGCGGGACGCTGTTTTTGCCGTTCACGGAACGCGCGCATGTCTCGGGGTTTGCCCATCGTATCGACGGTCATGCCTTCATCGGCCCACTCTCGGACTTGACCTGCGCCGTGTTTCTTGGCCAGCCGCTGAATCTTCGTATCCAGTCCGTCCATGTAGATCTCTACCCCGAAGCGTTGCTCACACGCTTGTGGTGTGAGCGACCCGCCACTCCGGCCCCGATCACGACCTGAGCCTCCCGTCAGCTCTTGGATCGAGGGGACAGACGAGGACCGATCACCCTTGCGGGTCCGTTCCTCTGTAGATCGAAATCCCATCTTTCTACCTGATTGACATCAANNNNNNNNNN # Right flank : CAGTAGGCACTAGAGGATGCGGGATTTTCCGGGGACCGGAACGAGACCTACGATAAACGGGTTTTCAGGGCTTCTACCCAACCCTCACCTCTTTTCCGGGGACTGCCGCCTTGCGACTTTACATACCGTTTGATAATCAGATTGTATGTCTGGTCGATGGGGGGTAAAGCAAAGTCAGTCTTCGTCGAACTCAGGGCTCGGGAAGCTCGTCCTCGTCAACATTGCCCTCGATAAACTCCCGACCGAAGTCAGTGAGTGCGTAGATGCCCTCTTGATTAGAGAAGAGGCCAGCATCCTCCAATACGCGCATCCGCTTGTTGACGTACTGTCGGTGGTAATCGATATTGGCCGCAATCGATTTCGCTGTCACAGCGATGTCGTGGTCCTCATAGAACAGCATTATCTCGTAATCTACGGGCGAGAACCACGAGATTCGATTGACCATTTCTCAGAGGAAATCGTCAGACATTGTTCAAAAATCATGGCTATCGTAGTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1830161-1829546 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZHH01000002.1 Halogeometricum borinquense strain N11 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1830160 30 100.0 36 .............................. CCCCGGCGCGCTCCGCGTGGCTCCGGCCGCGCACTC 1830094 30 100.0 35 .............................. CCATTAAACGACCACTTAAGAGAGTCATATCCGGA 1830029 30 100.0 36 .............................. ACTCTGGAATCGATGCGAGAGTTCCGTTTCGCAGTC 1829963 30 100.0 33 .............................. TTCAGCGGCGTCCGTGACACCGTCGACGACGCG 1829900 30 100.0 35 .............................. GGGTCCGGATAGACGACGTGGATGCCGCCGCGCTC 1829835 30 100.0 34 .............................. ACGAGGTGGCGATAGACGTGGAGGCGCGCCATCG 1829771 30 100.0 35 .............................. GCCTCGAAGTCAGTTATTACCTCCATCTCCATCCG 1829706 30 100.0 36 .............................. AGAACGTCTCCGGCTCGTCGCTTCCCTCGTAGACTA 1829640 30 100.0 34 .............................. CTTAGATGGAACGCTGTCGAATATCTGCCGCAGG 1829576 30 86.7 0 .......................G.A..AT | A [1829553] ========== ====== ====== ====== ============================== ==================================== ================== 10 30 98.7 35 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGGCGGCGACGTTAGACGAGGTCCGACTCCGAACACACGACGAGTGGCGTCGCCGGTTCGAAGCGGAGTTCGCCGCCGAATATCGTCCCACTAAGTGGAAACGGCTCTCGGACGCGCTGTTGAAGATTGGGGTGGTGCTCCTGCTGATCGTGAGCCTGCTCGCCGTGGTTGCTCCCGGTGTCACTAACGGACCCGTGAATATTGTCGGCATCGTGGGGGCAGTGCTCCTGTCCGGCGGACTCGGAATCGTCTCAGTTCGTGCTGTCAAGTACGACCTCCTCCCGGCGATTCGGCGGCTTCGAGCCGACCCCTCGGGTGCGCTCCGAGCGGTTTGGGACCAGTTCTAACGATGCGCATTTGAAATCGTTTTCTCTGGATTGACCCCCTCGACGGGCTGTCTCTCCATCGACCCCCCGGGGGTAGCGGGGGTATTGGAGGTCGACGGAAACTACTTGTAGTAACTGTCCATCATAGAGCCTGTGTGCCCCCAATCGGGCATG # Right flank : ATACACCCGACACAGCTTAGCCGTTCGTGTACGATCCTCGTAGTCCGACCAGTAACGCGACGACGCCCACGAGGAGGGCAACGAGTGCGAGCACTGGCTGACCACCCGTCGCAGTGAGAAAGACGCCAAATCCGACGCTCGCGCCGACGACAAGAATAGCCATACTACTCACCAGATGGACTAACTCAATTCGAAGCGTCGGGGCATCGGTACCAACCTCGGCTCCGATACTAAAGCCGTTCTGTCCCACGGTCCACGCGATCACAACGAGAAACGCAGCGAGCAAGAGATACACCGAGGCCATGCCCAGTATTCCGGCGACGACGACACCGACGAAAAGCAGGCCCGTCCCGACGGCGAACGTCTTCGGCGACGCTCGGAACAGTCCGACCGCAAGCAGAACGAGACCGAGTATCCCGAGCGCGAGTACGTACGGAGACACAGCAGTGACGAAGACTGCGCTGGCACCAGCAGACAGAGCTATGAGACCACTCCCGATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //