Array 1 134-1770 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXEQ01000031.1 Flavobacterium psychrophilum isolate 17-SE028_S6_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 134 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 209 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 285 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 361 46 100.0 30 .............................................. AGCGATGGAAAATGCGCACGAGCTTACGCT 437 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 513 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 589 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 665 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 741 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 816 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 892 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 968 46 100.0 30 .............................................. AGCCAATGCCTTGTTTCCTGTTATGTGTTC 1044 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1120 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1195 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1271 46 100.0 30 .............................................. AGAAGGTAATGTATTCACAATAGACACATT 1347 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1422 46 100.0 30 .............................................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1498 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1573 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1649 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1725 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1537-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXEQ01000007.1 Flavobacterium psychrophilum isolate 17-SE028_S6_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1536 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 1467 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 1398 42 97.6 27 ...T...................................... GAGTGCAAAAGCACCTCGATTAATAGT 1329 42 97.6 27 .A........................................ CTCTGCAAAAGACCCATCTCCAATAGT 1260 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 1191 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 1122 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 1053 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTTGAAGCTAACCTTTTATTGTATAAAATATTTTTTTAAAATTACTGAACAATAATTGTTTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACGTTTGTTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAGCTGGGTTTGGGTATATTTTTAAAGCGCTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGC # Right flank : ATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAATATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //