Array 1 4140974-4138691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUU010000001.1 Klebsiella pneumoniae strain CPO161 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4140973 29 100.0 32 ............................. TTTCTTGATGCTATGTTGAAGAAGATGAGGGG 4140912 29 100.0 32 ............................. ATTTGGCAGAGGCTGGTCGTGTCGATGTCGAA 4140851 29 100.0 32 ............................. ATACGTCTGTTACTTTGCTATTATTAGAAAGC 4140790 29 100.0 32 ............................. TTTCCTGTACTGTTCAGTTGCATAGTCCAGCA 4140729 29 100.0 32 ............................. AAATCGCAACGCACATCGAAGCCGGAAAAGTT 4140668 29 100.0 32 ............................. AATACACGGGCGTTCAGGTTAAATATTTTGAC 4140607 29 100.0 32 ............................. TGTCATACGACCTGGTAAACGACCGTTCCATG 4140546 29 96.6 32 ..A.......................... GTTTTGTCGACAAAGTACGTCTGCTCTCTTGA 4140485 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 4140424 29 100.0 32 ............................. TGATTGTCGCTATACCAGCGCTCAAGGAAAAT 4140363 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 4140302 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 4140241 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 4140180 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 4140119 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 4140058 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 4139997 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 4139936 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 4139875 29 100.0 32 ............................. CAGTAGCAGCCATCGCTGAGGTGAAGGGCTGG 4139814 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 4139753 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 4139692 29 100.0 32 ............................. CTCGGTGACCGGCAGATCGTTTTGAAACACAT 4139631 29 100.0 32 ............................. CGTCTGGCGAGGTTTACGACGAGCTGACGTTC 4139570 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 4139509 29 96.6 32 ..A.......................... AACGTAATTGGCTTACGGGGCGGTCGGCACAA 4139448 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 4139387 29 96.6 32 ..........................T.. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 4139326 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 4139265 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 4139204 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 4139143 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 4139082 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 4139021 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 4138960 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 4138899 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 4138838 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 4138777 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 4138719 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGAGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //