Array 1 126286-127468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXP010000011.1 Micromonospora sp. C41 C41_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 126286 30 93.3 31 ............................CT GCGCGTTGGACTCGACGATCGCAGCCCCTGA 126347 30 100.0 31 .............................. AGCAGCCGCGATGGCTGAGGACACGAGCACC 126408 30 96.7 31 .............................T GCCTGATCCACAAGTGATGGGAGCGGTGCTG 126469 30 96.7 31 .............................A ACACCCGGCACCTCCACATCGTGAAGGGAGA 126530 30 96.7 31 .............................T ACGGCGCGGCGCCGCGATGGACGCCTGAGCG 126591 30 96.7 31 .............................T TCCGGCGCTTCCGCCGCCTGCCCTCCGGAGA 126652 30 93.3 31 ............................TC GCTCAGCGCGGCTGAGATCCCAATGCAGTGT 126713 30 100.0 31 .............................. CCACTGGTGGTCCGGCGCTCAGCCGGTCGCG 126774 30 96.7 31 .............................A AGTGGACCGGTGGCGGAAGAACCCCGCCGCC 126835 30 93.3 31 ............................TC GTGGGACGGCTCCGCTTCCTCACCACCGAGA 126896 30 96.7 31 ............................T. ACCGATCCGAAGCGCCGCCCTGGCCGCCCGA 126957 30 96.7 27 ............................C. GACCAAGCGCCCGGTCATGGGCAAGAT 127014 30 93.3 31 ............................CT GGACGAGGAGCCCGACACCCGCAAGCCCGTC 127075 30 100.0 31 .............................. CGGACCCCGAGGGGTAGCTCACGCTCGGTAA 127136 30 93.3 31 ........................A....T CGGCCGGGCCCGCACCTCCCGGCCGGAACTG G [127153] 127198 30 90.0 31 ........................A...CA GTTCGCCGACCTTGAGCGCCACTCGTGCCCC 127259 30 90.0 31 ......A.......T.........A..... TCACGACGGTCGCCCCGACCGGCACGATCGC 127320 30 83.3 31 .....T..................AC..CC TGGTGCGGAAGATCGACGCCGCGTACCAGTC 127381 29 86.7 30 ..............-.T.......A...C. AGCTGTACACCGACCGGGATGTCGAGCGGC 127440 29 76.7 0 ...T..T......C.A.-......A...T. | ========== ====== ====== ====== ============================== =============================== ================== 20 30 93.5 31 CTGCTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : GGCGGTGGCCGTAGGCGCCCGCGGCGAGGTGGCCGGTGGCGCAGGCGAGGTTGTGCGCGATCGCGGCGCAGGTCAGCCAGGCGTCGGCTGATACATCCGCGAATGCATACAGAACGCTCCCCTCTTCCGACATTCGCTGCCGGCTCATGTCACCCACTCCGCTGCGGCGAGCCTCGATTCGTTACTGCGTCCGTTACGCCATCCGGTCAAGGACCGGCTCTGACAACGTGTCCGCGGCGGCGCGTGTAGCCGACCGCACCTTTTGCAAGCATCCTAGGAAAGGATGCTTGTGCGATCGAGGAAGACGCGGCATTGCCTCTACCGCGGCCAGTCCTCGCAGGCCTTCTCAACTCCGCCAGGACTCGACTTTGAGCCCGCCAACTAGGCTGGAGCCGAGAACGTTAGCTCGCTGCGTCAGCTACTGCCAGGGCGGGACGATCTTGAGAGCCGTAGTGAATGAAATCTGGGAAGTTGATCTCTACCATCGCAGGTAAAGGAGT # Right flank : GCGCGACGTGGATGAGCAGCCATCGCGCCCCTGCTCGCACGTACGCGACGGCGATATGCCCTGTATCGACGATTCGCTGCGTTCGTTGCCTGTTCCCATCCGCGCTGGAATCCGTGCGGTGGCTACTTCTTCCAGGCCGACCCGAAGTCCCCCTCGCCACTGCGGGCACAGCTGCTCGGCGTTGCCCGATCGAGCTGCACATAGAGGTCCGACGTCTCAGTTCGTGTGCAGTGAATTGTGGATGGTCGACGTTCGTGGACGGCTAAACGTTCCACAACGACCGTCGATCGGATCATGGTCGCCATGCTTGGTGGTACCTAGAGTGGTGCGGTGCTAACCGTCGGCGTTGACCTCGCAGCCGCAGACAAGCGCACGGCGATGGCCGCAGTTGAATGGCTGCCAGGCCGAGCAGTAGTGCGCGACCTGGCCCTCGGGGTCAGCGACGCCCAGATCGTTCAGGCAAGCCGCCGCGCGGACAAGACCGGGCTCGACTGTCCATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134837-136080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXP010000011.1 Micromonospora sp. C41 C41_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134837 28 100.0 32 ............................ CCGGAGCGCACCCGCGCGACGCTGGACGCGGT 134897 28 100.0 32 ............................ GCGATGCAGGTCGGTGACACCTTCCAGGTTGC G [134918] 134958 28 92.9 32 ................T..........T GAGGGGGCAGATAGGTGTGGCTGGCCGTTTCC G [134979] 135019 28 100.0 32 ............................ CCCGAGCCCGCCCCCGCCCGCGCGCCCCGCGT 135079 28 92.9 32 .....T.....................T CAGGAACGGAGTGTTAGCCGGCGTGCCGCGAC G [135100] 135140 28 100.0 32 ............................ CGGAGACCGTTGGTCGCGTCCCCGTTGATCTT G [135161] 135201 28 96.4 32 ...........................G CGCCAGATGACCGTCTCGATCCGGGCCGACGG G [135222] 135262 28 96.4 32 .........................T.. ACCCACCGTCCGCCGCGGTCGATCCGTTCCAC G [135283] 135323 28 89.3 32 ...........A..T............G TTGAACAGGCCGCTCGCCAGGTCGCCCACGGG G [135344] 135384 28 92.9 32 ..............T............G TACCGGACAGGGCACGCCGGCTCGACCGAGGG A [135402] 135445 28 92.9 32 ............T.T............. TGCATGGTCTTGACTGAAGGGTTCGACGACCC G [135462] 135506 28 92.9 32 ...........A..T............. GGCGGCCTTCGGGTTGGACAGCTGGAGCAGGC G [135523] 135567 27 92.9 32 .....-........T............. CTGCTCGCCGTGCTGGGTCCGGTGATCTCCGC A [135584] 135627 28 89.3 32 ..............T.......A....T GACCTGGAGCGCGACCGCGGACCCGATCTTCT G [135644] 135688 28 96.4 32 ..........A................. GCGAACGCGATCCTGAACGCCCTGTGCCGGGC 135748 28 100.0 32 ............................ TGCATGGTGCTCACGGAGGGCTTCGATGACCC G [135765] 135809 28 92.9 32 ..............T............G CAGCGGCGACCGTACCGGGTGAAGCGACTCCG G [135826] 135870 28 100.0 32 ............................ AGGCAGGCCACCATGACCCGCCATCCCTGGAA G [135887] 135931 28 100.0 32 ............................ ACGCCGACGACGGACCACAGCACCGCCAGGCC 135991 28 96.4 32 ......G..................... AGCCGCTCGGCCTCGGTCGGCCGTACGCGCTT G [136008] 136052 28 78.6 0 G.......A.....TA...A......G. | A [136069] ========== ====== ====== ====== ============================ ================================ ================== 21 28 94.9 32 CTGCTCCCCGCGCACGCGGGGTGATCCC # Left flank : ACGTCTGGAGAGCCCTGTACGACGCCGCTCGAGCAGAGTCCAGAAAGCTGGGTGACTTCGCGCCATACTGGGTGTTTTCCGGACCAGCGAAGATCGAACGACACGTCCTGCCCTATCCGCTCAGCCGCGATCAGGCGCGGTTCGACCGGCTCAAGGCGGACCTGGTGAGGTATCGGCTCGCGTTCGGCCAGCCGCGGCAGGAAGACCTGCTGCTCCTTCTGCAGCGGCAGGCGATAGGCGAGAACGACGTGCCTGATGTTTTGGATCTGCGGCCTCAACGGCCGACCGCTTCCCGGTTGTGAGACGGACGCTCGACTCGAGCCGGAGGAGGTGCAGTGAACGCCCGGACCCGTTCGCCCAAGTCGCACTGATTCACTACGCTCAGGTGGAGGTTGTCGGAGCGTCAGCTAGGCGTGAGACCGAGGGCAAGGGAAACGATCTTGCGAGCCATAGTGAATGAAAGCCGCGAAGTCGATTTCTAGCGGCCCAGGTCAAATAGT # Right flank : CTTGCCGCGACTAGATCAAGATCACGACGATCCGGTTTCGTTGGTTGCCGTAGCTGCGCGGCCGCGCCGGCCAAAGCGACGGCGCTTGGCCGCCTTGCTCCGACCTCCCGCGGCTGCTGGATTGATCACTGGCACCGCGGGTCGGCGCATAAGTGTCACACCCTCCACATCTACCGGCGTCCATTGATGGTCGTGCGCGACGATCGACAGTCGCTGCTCGCCTCGCACTTGAAACACCATGAGGGCGCGTCCGGCACCCGCCATTTCGGTCACCCGATTCCACAACCTGTTCCATACGCGGGCGCTGACGTGTCCGACGTACACGCCGGCTGAGAGTTCGAAGAGCCACTGCGTCAGGTGGCCTCGAAGTCCGGGTGGACATGACGTGAGGATGATGACCGTCATCAGAAGTCGACCTCACCCGTGTTGGCGTAGTTGCGCCCAGCGCCAGCTCGATCCCGCTCCCGTCCCACAATCGGAGATCCTCCGCCTCCTCTTCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 146991-149459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXP010000011.1 Micromonospora sp. C41 C41_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 146991 28 100.0 33 ............................ CCGAGATCAGCCCCTGCACCCCGGCGCGCGCGC 147052 28 100.0 33 ............................ CCGTCGCCGCAGCCGCACCCACGCGAGCCGGCC 147113 27 96.4 33 .................-.......... CCGCTAGGGCAGCGGTCGCACGCGCGTACCCCT 147173 28 100.0 33 ............................ GGCGTCGATCCCGCGTGAGGTCTGGGACATGGG 147234 28 100.0 33 ............................ GCTTTCCGGGCCGGTAACCTCGCCGCCGCAGTC 147295 28 100.0 33 ............................ ACACGCCCCGGCAGGGCATACGCTGAGGGCAGG 147356 28 100.0 33 ............................ GCCGGGCACGGAGGCAGCCGTCACGGAGGCGTA 147417 28 100.0 33 ............................ CCGGTCGACGGACTGGTTCAACCCGACCGCGAC 147478 28 100.0 33 ............................ GGGCAGCATGGGCGATCGTGCGCTCATGGATGC 147539 28 100.0 33 ............................ CCAACAAAGCCACCTCCTCCTAGCTCGGGAGTC 147600 28 100.0 33 ............................ GATCGTGGCGCCGTTTACGTTCACGTCCACCAC 147661 28 100.0 33 ............................ CTGGACGCTGTACTCGGTGAGCGTGTCGAGGAA 147722 28 100.0 33 ............................ ATCGGCAAACTCAAGCTGGATCAGGACAAGAGC 147783 28 100.0 33 ............................ CCCCGCCGCACAACGTCGAGGCCGAACAGATCG 147844 28 100.0 33 ............................ GCTCATCGGCGAGCGGGAGGTAGCCGTCGTGGA 147905 28 100.0 33 ............................ CTCGGCGCGACGCTGCGCCGCTCCGGCGAAGAG 147966 28 100.0 33 ............................ CTCCTGCGGCCGTGGGCCGAGATGCTGCGCGAC 148027 28 100.0 33 ............................ GGGCCCGGGCGCGCCGCAGCCGGGCTCGCCGCT 148088 28 100.0 33 ............................ GGCGTGGATCTTCTTGTGCATCGGCTCGGTGGC 148149 28 100.0 33 ............................ GGCCGTGGCGAAGGTGCTGACCCTGCTGGGCGG 148210 28 96.4 33 ....................A....... CTCTTGGCACCGCCCCAACCCGAAGACGGCAAC 148271 28 100.0 33 ............................ GCGCCGGCGCAACCGGCCGCGCCCACCGGGCTC 148332 28 100.0 33 ............................ GCACCCCGTCGGAGCAGCCCACGTTGTCGGCCC 148393 28 100.0 32 ............................ CCTGACCAGGTGAACGGGGCGGGCGCGGACGG 148453 28 100.0 33 ............................ CGTGTCCGGCACGTACACCGTGGACAGCGCGCC 148514 28 100.0 33 ............................ CTTGGCAGAGCGCGCCCTTCGGGAGGGCAAGGC 148575 28 100.0 33 ............................ GTGGCGCGCCGACGTCCAGGGCAGATCGATCGC 148636 28 100.0 33 ............................ CAGTCCGGGCCCGTCGCCCAGCCCACGGTGCGG 148697 28 96.4 33 ........T................... CTCCGACTCCCACTTGACGAGCCCGAGCACCGT A [148715] 148759 28 100.0 33 ............................ CCGCTTGCCGCCGCGGATGAAGTGCAGCGGCGC 148820 28 100.0 33 ............................ GAAGGAGACCACCCGCTCCGGGTACGCGGTGCT 148881 28 96.4 33 ........................T... CTGTTGGCGGCGGGACGGGCCGAGGTTGCCGAG 148942 28 96.4 33 ...........A................ TGTGAGCGACACTGCAGCAGCGCATCCCGCTCG 149003 28 96.4 33 ..............G............. CCTGCTGAGCAAAGCCGGCCGGGCCAAGAAGTT 149064 28 100.0 34 ............................ TTCGACGTTCGGCCGTACCGGCTCTGCCCGGCCC 149126 28 100.0 33 ............................ ACATGCCCACCAGAGCCGGCCCGGCGGTCTTAC 149187 28 100.0 33 ............................ CATCGCGCGGATGCGCGCGGACGACCGGGCCGC 149248 28 96.4 33 .....T...................... GTCAACTACCGTGTCCGACCGGTCTTTCGGTCC 149309 28 100.0 33 ............................ CGACATTCTCATGTGGCAGGGCAACGCCCTGGC 149370 28 92.9 33 .....T..................G... GAACAGCAGCGACCGGTGGCAGCGCCCGGAGTG 149431 28 82.1 0 AC.G.................C.....G | A [149453] ========== ====== ====== ====== ============================ ================================== ================== 41 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TTTGGCCCAGCAGCAGGCATACGGCGAGGCATTCCGAAAGCTCGTCGACTTCCGTACGGCCCTCGAAGAGACTGCGAAGGCCGGAGCGGCACTCGCGCGAGAAGTGGGCGACAACCTCTTCGGCGGGAACCTCGAACTCCCCGACATCGAGTAGGCCTGCCCACAGACAGCGGGCTGCGCTCTAGGGAATCACGGCGAACCGCTGCGCCGGCAGCTGCCGTATTCGGACGTGTCCAGAGTCCGGCGCGCTGGCGCGACGGCTCCACACGTCACATCGCCCCCTTGGCTAATCGGCAGCCCCTACCAGGGCGCCAGCATCTGAGCATGCCCCACTGTTACCGCCGGCCGTCGTGTCCGCCGCTCGTCCTGCGTTGACCTAAACCAACTACGCTATTGGGAGCACCGACCTCCTATGGTCAGCCGGCACCGAAAGGATGATCTTGCAGGCCCTAGTGAATGAAATCGGCGAAGTCGATCTTTAGCGCCGCAGGTCAATTAGT # Right flank : GGTCACCTCGTCGAGTTCTGTTCCTCCACACGCAGGTATTACGACACCAACAAGTCCAATGTGTTCCGGAAGCTAGCGCTCAGGCTTTCTACGATCCGCTGCCCCTTGCCACTCGCTGCGAGTGAGGGACGTCCGATCACCCCGGACTCGGTGTAAGCGCCCATTCCAAGCGTGAGCAGGTGCGGATGCTCGGCGACGTGATCGCTTAGCTCGTAGCCGTCGCGCACGGTCTCCGGCGCCACGTGAAGCAGAATCGAGGTCTCAATCTCCCCGGCGTGCATGTCGTCATGCAGGGTGCTCACGATGCCAGCATCCTGGCATGCAGTCTCCCAGGCTGTCCGATTCGGAAATAGCGCGAGCTGAGGTCCGGTGACGTTGGCCTGCTGCACGATGTTCGAGAGCACGTAGTTCCCGCCGTGCCCGTTCACGATCACGAGGCGGTCCACGCCCGAGCGCTGAAGCGACTCCCTCACATCGGTGATGATCGCGTCTAGGGTGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //