Array 1 138105-138804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWNC020000006.1 Escherichia sp. 93.0816 MOD1-EC7261_6_length_218990_cov_35.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138105 29 100.0 32 ............................. TTACGCACCAGAAAATACGTATAGTCCCCGCC 138166 29 100.0 32 ............................. AATGTGTTGTTGGCCGCGCTGGTTGCCCCGCC 138227 29 100.0 32 ............................. ACGTGCCACCGGAAGAAAAAGCAGCGCAGGAC 138288 29 100.0 32 ............................. ATCTGGCAGCAACGAAACGCCGCGTAACAGTC 138349 29 100.0 32 ............................. ACCAAAATAGCCGCTGGCATTCGCGCTGGCGT 138410 29 100.0 32 ............................. CGAAGACGCAGCATATCCTGTTCATGAGACAG 138471 29 100.0 32 ............................. ATCCAGTTGGCAACTGATTGAGATGACCGGAA 138532 29 100.0 32 ............................. TCGGCGGGGTCGACGGGGGTTGGTTTTTCGCC 138593 29 100.0 32 ............................. CGCCCGTTAGTGTCCGCGTACAGAATTGGAGA 138654 29 96.6 32 ............C................ TTAACTAGCGCCAGTGTGCCTGTTGCTACTGT 138715 29 96.6 32 ............C................ GGAGGGTATAGTTAATTTCGTTGAGGGCTGCG 138776 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTATTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACACGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTACCATTCTCTACAAATTCTGTGGCGTTAATTTTTTGCTGGAGTGAAAATTATTACGGTGAAGTTTGGTAGATTTTAGCTTTTATAGATTCATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGTTCCTGTAAAGTTGGTAGATTGTGGCTGGCTTAAAAAATCATTAATTAATAATAGGTTATGCTTAGA # Right flank : TTTCAGTAGGGTTCAGCCCGGGCAGTTTCCCGCCCGGTATTCCTTACTTACGCATTCGACCAGCTCTGGATCGAATCCGCACTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAAAATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATACCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCACTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGATCGCCGTTGCGTAATCCGGATACAGACCCAGACCTACCGCTGTATTAATCGCCGCCCCCAAACTTGCACAGCCGTTAATGGCGTTACGCCGTGCCGGAAGGTTGAACACGTCGGCAAAAATTTGCATAAACAGATCGCTGTTTGAACCGCCGCCAGTAATGATCACATGTTTGGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163856-164434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWNC020000006.1 Escherichia sp. 93.0816 MOD1-EC7261_6_length_218990_cov_35.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163856 29 100.0 32 ............................. ACTGCTGCATGGATCAACAATGAGCTGATAAT 163917 29 100.0 32 ............................. TTGATCCGGCGACCAATGTTTAGCGTCACGCG 163978 29 100.0 33 ............................. TTTATCACTATTTTGATTATCTGATTCGTCAGC 164040 29 100.0 32 ............................. TTCCGGGCAACTCGCGCGGAGTCTCAAAACTG 164101 29 100.0 32 ............................. CCGACGATAATCTGCGTTGCTGCTGGCGTCCA 164162 29 100.0 32 ............................. ACGTATACGAAATCAAGCACTCCCGCGCCGGT 164223 29 100.0 32 ............................. GTTGGCGCTTTCGCTACATCTAAACGCCTGGC 164284 29 100.0 32 ............................. GGCAGTTTCAAGTCAGTGGACAGATTGTCAGT 164345 29 100.0 32 ............................. CTGTCGCTTGGCGATCGAGTACGCTGGGCTGA 164406 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTACTTGCTGCCGGTGAAATTGAATCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCACCGGGGGCGCGGCGGATGAGTATGATCGTAGTTGTAACGGAGAATGTTCCCCCACGTTTACGCGGACGGCTCGCTATCTGGCTACTGGAAGTCCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATTAGCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAGGTTGTCTGTTCTTTAAAAATGAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATCGGTTTAAAAACAGATATATATGCTTAGT # Right flank : ATTTACACTACGGGGAACACCCAGCTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATTACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTGGTTCCCTCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCGTCTTTATTTCCCAGATTCCAGTTTGTCGCTTCCACTGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTTAGACCCGGATTGGTCGTGGCGGCAATTCCATGACTGCGGGCAATTGCCAGTGCCCTGTCTCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCACTGTTGAAATACAATTTATCGCCGACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 149367-151016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWNC020000008.1 Escherichia sp. 93.0816 MOD1-EC7261_8_length_194520_cov_34.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149367 28 100.0 32 ............................ TTGCGCCGCTTCGTGTAGCGTCGGGAACATGG 149427 28 100.0 32 ............................ GGTCATCCTGAACGTAACCAGTGGCGAAACAG 149487 28 100.0 32 ............................ AACAACGGCAGCCTGTTCGTCGCGGGTAACGT 149547 28 100.0 32 ............................ AACGTCTAAAAGCCAAATTCGGCTAAGAGGAA 149607 28 100.0 32 ............................ ACCAACAAATACGGGTGTTGCCGCGCAACACA 149667 28 100.0 32 ............................ ACAAGGGACTGGAAAGACGGCAAGGAATGCAA 149727 28 100.0 32 ............................ ATACTGGATACACCCTCGGCGGCGGTCGTCGA 149787 28 100.0 32 ............................ AGAGTATAACGTAAAAGTTATGGGCCCTATGA 149847 28 100.0 32 ............................ TATGATTACACCGGGCCTATTAATGGGTATTG 149907 28 100.0 32 ............................ GTCCAAATCAAAAGTTACTGGAGAACTCATAG 149967 28 100.0 32 ............................ GCCTGATTCCTTTGTTCCCCCCGTGGCAGCAA 150027 28 100.0 32 ............................ ATCTTCGCGACCCTCAAAAATTGCGTCTATTC 150087 28 100.0 32 ............................ TTAAAGACGCGACGATGGCTGCTATTCGCAAT 150147 28 100.0 32 ............................ TGAATACGTGCCCACTCATATCCACGAGATGT 150207 28 100.0 32 ............................ GCAACGGAAGCCCGGCAGAATGCCGCCGCCGC 150267 28 100.0 32 ............................ GGTAAACGAGGTTGTTCTGATTCTGGAATCAG 150327 28 100.0 32 ............................ TTGCAAAAAAAAGAGGTCCGATTTTCTATCTA 150387 28 100.0 32 ............................ ACACGCAAGCGGTCAGCAATGCAGCAAGCGGA 150447 28 100.0 33 ............................ CTGGTCACTGCCAGTGACTGAAGCGCCACCAGC 150508 28 100.0 32 ............................ TCGGTGGGCTGGTTTCCTATGCGGCAAAGGTT 150568 28 100.0 32 ............................ TGCTGAACGCGCGAACCAATCCAGCGCATAAC 150628 28 100.0 32 ............................ GCTTACGGTAAATCCGCGTTATACGCAGTGCA 150688 28 100.0 32 ............................ ATTGCCGATGCGTTAAACGTCGATGCGCGATG 150748 28 100.0 32 ............................ AGAAGAAGCTCTCCCTGTTTTGTACGCTAAAT 150808 28 100.0 32 ............................ TCAAGAAAGCTGTCCATGGACGATTTCAGAGC 150868 28 100.0 32 ............................ ATCTCATTATTATTGAGTATGCCGCTTCCCAG 150928 28 100.0 32 ............................ AAACGTAGAGGATCAGCTGTCGAATGCAGCAA 150988 28 85.7 0 ...........A........T...C..T | C [151011] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGGGCACGTCCGATGGCACGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGTCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCCGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTGATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACTTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160254-161481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWNC020000008.1 Escherichia sp. 93.0816 MOD1-EC7261_8_length_194520_cov_34.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160254 28 100.0 32 ............................ TTCAACGATGAAGTCGGCACGCGCCTGCGGTT 160314 28 100.0 32 ............................ AGAGTCAGGGATAGCGTGTTAATCGTCCATTC 160374 28 100.0 32 ............................ AGGCCGCCAGGTCCTACGACCCCCTTAACTAT 160434 28 100.0 32 ............................ ATGCCTACTGTTTTCTGTTGCGGGCCGTTTTT 160494 28 100.0 32 ............................ GGTCGCAGCCAGGATTACACAGGTGTAACAAT 160554 28 100.0 32 ............................ ATCTCCGTTGAAAATCTTCCATCACTTTCCCT 160614 28 100.0 32 ............................ CGATCTCCGCGCTGTCCATCATTGCTTTATTG 160674 28 100.0 32 ............................ ATATCGTACAGCATACCGGCGAGAGAGAAGGT 160734 28 100.0 32 ............................ ACTTCGCCATCTGACTGGCACACTGACTAATC 160794 28 100.0 32 ............................ GGTGAAGTGAAAGCGTCAACCGGGCGTTTTAA 160854 28 100.0 32 ............................ AGCAATGAATGTTGGTGTAGAGTTCGGGTGTT 160914 28 100.0 33 ............................ ATTCATGCAGCAGCTCTTTCGCACCACCAGCAC 160975 28 100.0 32 ............................ AGTGTGCCGAATCGGAAACGCTCCATATACCG 161035 28 100.0 32 ............................ ATTTCAGGTAACAAGCATACCTGAAATAAAAC 161095 28 100.0 32 ............................ TCATGGCCTTTATTCGAAAAGCAATGCGCTTT 161155 28 100.0 32 ............................ GCAAAGGGTTTTCGACCATTACCCAGATAATT 161215 28 100.0 32 ............................ GTTTGCATCGTTTCACATTGACGTGCAGTCGA 161275 28 100.0 32 ............................ ACAAGTAGGGCATGGTGATCCTACTTTAGTAC 161335 28 100.0 32 ............................ CATGGAGCGGCGTAACCGTCGCACCGGCAGGA 161395 28 96.4 32 ......C..................... GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 161455 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCATATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGTTATTATTCCA # Right flank : AATCCATAACCCCATATTTATTTTCTTCATTAACTCCAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //