Array 1 1132362-1129384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1132361 30 100.0 38 .............................. GTATCGACTGGATCCAGGACCCTTGTCCCTTCCCTCCA 1132293 30 100.0 41 .............................. TTCTTTTCTTATGGGTCATTTTTGTGTATTTTCTTTTCTTC 1132222 30 100.0 38 .............................. TTAGCTTATGAAAGGAATAGCTCCCGAAAGAATCAAAA 1132154 30 100.0 36 .............................. AGGGCCAAAAGCTTGTTTATGGCCCGATCCATGTTC 1132088 30 100.0 35 .............................. AGGTTAAGGCTAATCGTCCCCGCTATCGCGTATAA 1132023 30 100.0 37 .............................. TTTTATTCTCGGGTGGTAACTGATGCCGAAGCCGACC 1131956 30 100.0 38 .............................. GTATCTCCTCACTCACGGGGCAAAGGCCAAAGGGTGGA 1131888 30 100.0 36 .............................. GTCGCTCGGCCATGTCGAGTAGGCCGTATGCGTCCG 1131822 30 100.0 36 .............................. ATGACTTTAGTGGGTCTATGCCTTATGTTCTCCAGA 1131756 30 100.0 36 .............................. AAGAAGGTGCGTGACACTATCTCGGGCTATCTGTAC 1131690 30 100.0 37 .............................. TTCAGATGTATCCGGATGATTACGTGATCATAGTCTC 1131623 30 100.0 39 .............................. CCGGTGAAACCTCTCCGATCCCCGGTCCCCTTCGCGGTG 1131554 30 100.0 37 .............................. GTTGCTTTACCGAGGCGTCAATAACGCTCAGCTTCTT 1131487 30 100.0 36 .............................. GCAAGAGCGTTACTGTCCAGCTGACCCTCGACAAGG 1131421 30 100.0 38 .............................. GCCCGTCCAGACGGGAAAGAATCTCCTCCAGTTCTTCT 1131353 30 100.0 37 .............................. ACTCCCAGAACATACCCCCACCTCCGGATTCTTCAAC 1131286 30 100.0 38 .............................. GTTGGACTGATGGAGGTATCGCTTCCGGCTTTTGGTAT 1131218 30 100.0 37 .............................. ACTATTCATCTCTTTGACTAAAATGCCATCGGAGTTC 1131151 30 100.0 37 .............................. TTCACGTCGTACCAGTTGCGCCAGTCCAGCCATGTCG 1131084 30 100.0 38 .............................. AGACTGACGACGATACTAATGAAGACACTTGGACGCCC 1131016 30 100.0 35 .............................. CAGTATAGTGTTGCTGGAAACACAATATACTTCAA 1130951 30 100.0 37 .............................. GAGGAACAAAAAGTGTTCTTTGCCGGAACTATATTCG 1130884 30 100.0 38 .............................. CCGATAACTCCGGAGGAGATTCCGGACAGGTTGAGGTT 1130816 30 100.0 37 .............................. CTAAGACTTTACCCGCCACACGAGAGTACTGTTCTTT 1130749 30 100.0 36 .............................. GATATGAAGTTATAGACAAAGACACTGAAATGATGC 1130683 30 100.0 37 .............................. CAATCACCCCCAGAACAAACATTATAAGGACTAAAAT 1130616 30 100.0 37 .............................. TCATTTTGACGGTGCCGGTTTTGCGATTGACGTAAAT 1130549 30 100.0 37 .............................. AAATTTCCCCTCGCACTCGTGGGTGAGGATGTAGTAA 1130482 30 100.0 36 .............................. AGGGTCTTCATGGCCTTATCCCAGTTTATGTTGATA 1130416 30 100.0 38 .............................. GAGTATTTGGGAGCGTTGGGGTTGCGGTGGTATCTTCT 1130348 30 100.0 37 .............................. GGAGCTTTGCCTTGAACTCTGCTCGTATTGAGTTTAG 1130281 30 100.0 38 .............................. TAAGATCTTCTTAAGCTGTCTTCCCGTCGGGGCGGTCG 1130213 30 100.0 38 .............................. TTTGGAATTTATCTTTTGTGGTAAAAATGTGAATAAAA 1130145 30 100.0 37 .............................. TCTGTTTGACTTGATATGCATATGGATCGGGCACCTT 1130078 30 100.0 35 .............................. AACAGGTCGCTAAGAGTAAACGCCAACCTCACCAC 1130013 30 100.0 34 .............................. TTCTCGTCCTGGGTCGGGCAGTCCAGGGAAACCT 1129949 30 100.0 37 .............................. GGGGCTTCATGATGGTCCTTCTCCTCTTGCGCTGCTC 1129882 30 100.0 42 .............................. ACCCAGAGAGGAATGGAGAGCGTCGCAGCCAACTACATCAGG 1129810 30 100.0 37 .............................. GACGTTGGGAGGATTGCATTGCTGTGAGGAGGTGAAA 1129743 30 100.0 37 .............................. CAGGCAGGGGGATCCTGGCGACAAAACTTCGGCACGC 1129676 30 100.0 36 .............................. CGAAGAACGCCAATGCTATGCCGAAGCCGAAAACAG 1129610 30 100.0 37 .............................. GATTTATGAGAACCCGAACGACCCGCCCTTGGATGGC 1129543 30 100.0 33 .............................. TCCCTGTCAGTCGTCCACCACCACGGGGGTTCG 1129480 30 100.0 37 .............................. CATAAGAAACCTGTTTCTGTGTAGTGTACGTTTTCGT 1129413 30 80.0 0 ...............C.T.....AA..C.G | ========== ====== ====== ====== ============================== ========================================== ================== 45 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : CTACGGCCCGAGATTTTTAGGGCTTTTGGCCCGTATCACGTCGCGATCTTGCAGATGGCCAATCTGCCAGGGAATGGAGGTGCTTTTCAAAAACCCTCCCCTTCAATCGCTCTGGAAGTCTTTAGTAACCTTCGGTTAGTATCTAACTTAAGGTCACAAAATCCGTGCAAAATATAACGAAAATTTTTCGAAATGATGAATGGGGTGATGTGGAGACTGTTCCACAGCTGCTCCCAGTTTAAACACTATGGTTTTAGGTTTCAGGACGTTAAATCGCGATTAAAGCGATTTAATGCGTCCATGAGGCCCGGGAACTCTCTTGAATAGTTATGTACACTGACTGAAATCCCGGACAGGGCAGGCGCAGGGAAAATTTTATCCCTTTACGAATCCCCAAACAACGCTCCCAAAGCGCTCTTTAATCAGCCCTTTGAAGAAAAGCTTATAAGATTCAAGCTCTCCTATCTTTTTATAGGGCAAAAGAGGGAAAAAGTCGCCCT # Right flank : CCAAAGAAATCAAGAATTACATAATTCTGCACATCCTGCCGCCAAAGCGGTTATTCTTCCCCTTCCGAGAGTTCCATCTCAACTACCCTCTCGAAGACCGCCCTGTGGTTCCCGAAGGCCTCAAACATCCTGCCCGAGTAGTTCTCCGAGGCCGTCTCAAGGAAGAGGCGCAGGTTTCTGCTTATCTCGTCACTGACCGGTACGTGGAGCGGCGCCGGCTCGTAGTAGTCCAGACCCTTCATGAGTGCCGTTGAAAAGTACCACAGCGTCTTCCTGACCTTCCTGCCCTTTATCCGCGAGAAGCTGGCCTCCATGCAGTTGAAGGCCGCGTGGAGAACCACCATCATGTCTATCTCGACACCTCTTTTAAGGAGCTTTTTCCTGTGGGAGTCGTTTCTTAGATCCTTTATCCTATAACCGCTCCTTGTCTGCTCGTCGTAGGGGACATCAACGTCGTAGATGCCCTCTATCCTGGGGTCGTAGACGAGAACCTCGGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1502653-1500605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1502652 30 100.0 38 .............................. AACCAGAAGGCGTAATAGTCGCCCTCGGTGACGTTGCG 1502584 30 100.0 37 .............................. AAGAGCGTGAATCCTGAACCCTCGGAAATGCTCACTG 1502517 30 100.0 37 .............................. AGGTAGTACTTGCCCGACTCGGGAGAAACTACCTTTC 1502450 30 100.0 36 .............................. GCGATTGTGGTCGATACGCTTGGAAGGCCCAGGGAT 1502384 30 100.0 38 .............................. CCAAAAGCGAGCCGAGCACCAATAAGGCCAAAACCAAC 1502316 30 100.0 36 .............................. CCCCGTAGGCGCTTTTAAGGGCCTCATAGGCTACCG 1502250 30 100.0 36 .............................. AAAGGTCGAGGAGAAGGCTAAAGAGCTTGGGGTTTT 1502184 30 100.0 36 .............................. ACTTCGGGGCGAGCATGGTCTACGGCGGGACAGAAC 1502118 30 100.0 38 .............................. TTCGATATACGAAGCGTTCAAGAGCAAGTATGCGGAAG 1502050 30 100.0 38 .............................. CGGATTATTGGCTTATCTATAACACGCGGGACATGCCA 1501982 30 100.0 37 .............................. TCCGAGAAGGGGATTTGGTTTCAGAAAATGTACTGCC 1501915 30 100.0 38 .............................. TCCAAGACTGTGGACGACCTCTCCAAGCTCCTCTGGAC 1501847 30 100.0 39 .............................. TTCTCTCAACAATGACCCTCAATTGGCCTTTAGTCGTTG 1501778 30 100.0 37 .............................. AGGAAGTGTATTCAGTCTTGGACGATATAGTACAAGT 1501711 30 100.0 37 .............................. CTGCCTCCCTCCTTCCAGGTCGAGCCGGCCCTGGATA 1501644 30 100.0 38 .............................. GTGAGCTTATAGGCCGTCTCCAGTCCACCCGAGGCCGT 1501576 30 100.0 36 .............................. GCCGATACTCATCCGTTATATTAATGCCATTTAATG 1501510 30 100.0 36 .............................. AAGAGAGAGCGTTTTTCCGATGTCGAGGGCAAAAAT 1501444 30 100.0 40 .............................. GACTCTCTCTAGCACTTTGTCCCACATAGCGTAGTGCCCC 1501374 30 100.0 37 .............................. CCTCGTAGTGCTCTTGGAGCAGCTGGTTGTAGAGGCC 1501307 30 100.0 37 .............................. AAGGTGAAGCTCTACGTTGACGGCGTGCTCAAAGCGG 1501240 30 100.0 38 .............................. ATTATTTCCCACTCCCCGTTCTCATTCTGTCTAAGCTC 1501172 30 100.0 37 .............................. GAAGGATTTATACAGGCATGGTGGCGTGGATAAGGCG 1501105 30 100.0 36 .............................. GGGGAGGTCGGCACGAATGGAGGTCAATAAAATGAA 1501039 30 100.0 39 .............................. AGGGGGAGAATGCAGAGTTGGATACTGATGACGTCAGCA 1500970 30 100.0 38 .............................. TGGATTGAGGGGCAAACTCAGATAGTCAGCGACTCAAA 1500902 30 100.0 39 .............................. TGATGCCAAGGCTCCTTATGACAAGGCCGGCACCGACGA 1500833 30 100.0 35 .............................. CTATTTTCTGGTTGAGGGCCTCGATGCTCTGCCGT 1500768 30 100.0 38 .............................. TTCGAGTACTCCCCAACGAGATCCAGGTTCAGCTGCCT 1500700 30 100.0 36 .............................. GTACTTCTACACTCCCGAGGAGTTCGAGAAGGAGTT 1500634 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 31 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CGGATAAGGTACTGACGGCCTTTTTCCGGGGCGTATCAAGCTCCTGCCGGACAATTTCTTATTCTGGCGTGTTTTCGCCCACAACACTAAAAGCGGAGGCATTCTGGCTGATTTGAAAGGCTTTAATAACTCCGGGTTAGTATTAACATCGCGTTATGTTTCCAGAGCCAAATATAACGAAAATTTTTCAAAGAGTCAAAAACGCCTCTGTACGGTCTCCGTATATCTACCTCCTCCTTCAAAATGTTCATCCGGTCCAACAGGGACGGGAAGGGAAAAATAACAACGAACAACGCCCCCACAAAGCTCGGGAAGTCTCATGTACAGCATTGGTCACCGAAAAAACAAAATCCCGCGTCCCGCGCTTTCCCCGAACCGACGTCGGCCCGGCCCGGGATTGAAGGCGTGTTAGACCTTCAGGAAGCGACCTTCAAAGAAAAGCTTATAAGATTCAAGCTCTCTTATCCTTCTGTAGGGCAAAAGAAGGAGAAAGCCGCCCT # Right flank : CCCGAGCTGACAATGGTCAGCTCAACCTGGACGGGAACGTTGCAATACTGCCCCAGAAACGAAAAAATTGAATAAAAACAACACCGGCTCACTCCCATTTTCCGAGGTCGAATGGGTACTTGATCTTCAGCACCGCGACTGCCATCAGCCCGGCTCCGATGAACTCCATGAGGACGTCCCTTATCTTGTTGCTTATCGGCTCATCCACGTGGGGCAGTATCGTCAGCGAGGCCGCAAGCTCTATGAACTCCCAGAGGATTCCTATCACGAAGAGGGCCAGCATTGAATACTTCACGATTTTCTTCGCGCTCCAGCCCTTGTTGTTGATCCTTGAGTACTCGAGGGCTATCTTGGCGAATATTGTCCACATCATCAGCCCGCCGAGCGAGTGGCCGATTATGTCGCCGTTCTCGTAGACGTTGTAGAGGTCGACGTTGAGTATCGGCACGTTGAGGAGCGTCACGTGGAAGAGGAAGAACACCGCCACGATTATCATGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 3 1574998-1573978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 1574997 29 100.0 43 ............................. CTCCAACATACACCTCTTCCATATCCTTCACCTCCGATCAAAG 1574925 29 100.0 42 ............................. ATGCTCATACAAGGGTACCCTGTTCCTGCCTCCATCTCAATC 1574854 29 100.0 50 ............................. AACTTGTTTTCCAATCAGCATGTACTTCGACATCTCATATCACCTCCAAA 1574775 29 100.0 59 ............................. TAGCTTATGTGCCTAAGGAACGCTCGGATGTCCTTGTTTCTAGCTATTATGGTGTTTCC 1574687 29 100.0 45 ............................. GTGAGAACTTTCCTGAACTTCTTGACTGGCAGGTGCTTGATTCTG 1574613 29 100.0 42 ............................. TTGGTCTCAAGGCCAACGACCTCTATCTCCACAAACGGCTTC 1574542 29 100.0 44 ............................. TCCACAACATCTTTAATGTACTCGAAATCTAGCGGAACTACCAG 1574469 29 100.0 56 ............................. CTCAACGCTGCCCTGATGTCTTTGTTTTTGGCTCTTATGTTGTAGTTCGCAGCGGT 1574384 29 100.0 46 ............................. CCCTAAGTTCACGATTTACAAGATTTACGTGGAGCATAACGGTAAG 1574309 29 100.0 45 ............................. CTGTAGGGGTGTGTGCTATTGGATTCACCTTCAAGATTATCAAAA 1574235 29 100.0 48 ............................. GATGTCAGCCAGTACTGATAGGGCCTTCGCTTCTTTGCCGCCTAATGG 1574158 29 100.0 47 ............................. GCTCCGACATCAACGCTAACCGTGAACTCGACCACCTTCTCATTTAT 1574082 29 100.0 47 ............................. CGAACCCAGCCCTACGAGGGGAGTAAGGAGACCGTGTTCCCTCATAT 1574006 29 93.1 0 ...........................CG | ========== ====== ====== ====== ============================= =========================================================== ================== 14 29 99.5 47 GTTTCAGAACCAGCATAAGCTTTGGAAAC # Left flank : GATTTTTGACGACGCGGCTGTTTTGGCCGAATTGAACCGTCTCCGCGCTTTTCAGTTTTGCAATTCCCGAGAGTAAAAATTTAAATCCCAGAAACAAAAATCTGCTAATATGGTTCGTTTAAGCTTGAGGAGGATTGAAAATATTGTTCTGTCAAAAAGAGGCGAAATCCAACTACTTTGAAGTCGGTCTTAATCCACGGGTTCTGGTGGCTCCCCTTGGTTAATGAAGCGTTCTCGTGAGTTTTACGTGGAGTGATTTTTGAGGATTGGGCTGGATTTTTGGATTAATGCTGTTTAAAGTGTTAATATTGGTGTCAGGCGTTTTTATTGATTTCACTGTCGGATTCCTCTTTTGATAGTTCTCCGTTTGATTTTCTACTACCGTCTGTGGTTCGGGAGAAGAGTAGATAAGGGTCGTTTTTTGAGGCCTGAGCTAATCGAAAAACTTATAAGGAGGAAGATCGTTATTTTATTCGCCAAAAGGAGCGAAAAAGTGAACC # Right flank : TTCCCCGTTACTCTCGATTTATTGGGCCTGCCCTCTTGTTCCCTAACCGAAAATCTTTTTATCTTGGAATGCGTACATTCCTGGGTGTCGCCGATGAAGTATCCCCTCTTCATCACCCAGCACGGGAAGTTCGAGAGGGAGGAAAACGCTCTCTTCTTCGTCGGCGAGCTCGTTAAGAGGGCCATACCCCTCGCCCAGGTGGAGGAGATACACTGCCTTTCAAGGGTCTCTCTCACGAGCGGGGCGATTGACCTGTTGAGCGAGAAAGGTATTCCCGTTCACTTCTACACGACGAAGGGCGACTACAAGGGTTCCTTTATCAACGACGCCTCTCCGCGGGGGAAGCTCCACCTGGCTCAGGCTGAACACCACCTCAACCCTGAAAAGAGGCTCCACATAGCGAGGGAGATTGTAAAAGGGATTCAGAACACTATGGCCTTCACCCTCTCCCGCTGGGGAATTAACCCTATCAAGCTGAACTCGGTTAAGGTTGATGGCAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCAGCATAAGCTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 1585801-1584774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================== ================== 1585800 29 100.0 45 ............................. TCGCAGTTGATGAAAACAATACTGTGATGTCCGCCACAACAAAGA 1585726 29 100.0 45 ............................. ATCCCCGCCCCCGGACCAAAATTTCGTGAATTTTTGTATACAATC 1585652 29 100.0 62 ............................. TGCTGAATTCTGGACATGTTTCTTCCATAATCGACGAGAGTATTTCAGCAAGTACTTCTTTG 1585561 29 100.0 49 ............................. CTGAAAGCATGAAATCCCTGTTCGGATACACTTACAACGCGATGGAAAC 1585483 29 100.0 40 ............................. CATTTACCACAACATCACCATCTGAATTTATCGTTATTGG 1585414 29 100.0 53 ............................. CCGGAGTCGTAAACGTAGACGTATATGGTTGCTCCTGCCGCGAGGTCCTGGTC 1585332 29 100.0 40 ............................. CGTGAGTTCGAGCATGAACCAGTTTTCGTATGTTTTCACC 1585263 29 100.0 44 ............................. CTCCCCGTCACACACCCCCTGGCCGAAGAATTATTCACTACTCA 1585190 29 100.0 56 ............................. TGGCGTTAGCTCCAAAGGAGAGGGCATAACCTACTCCTGCCAAAATTGAGGCCGTA 1585105 29 100.0 41 ............................. TTAACGGAGAAATCCGGGAAGTTAGAGAAGTCAATAGGGAA 1585035 29 100.0 44 ............................. TCACCTTAACCTTTTCCCTTTCCACAAAGCATCACCATATTTAC 1584962 29 100.0 59 ............................. TTGGGCTGCTTGGGCTCGTCTCCCTTAGCCTTTACTACTCCTTTCACAACTGCTCCCAA 1584874 29 100.0 44 ............................. CACTGAGACTGCCTCTTCAATATCTGCTTCAATGATGCCGTTGT 1584801 28 79.3 0 ...............C.T...C..-..GT | ========== ====== ====== ====== ============================= ============================================================== ================== 14 29 98.5 48 GTTTCAGAACCAGCTTAAGCTTTGGAAAC # Left flank : GATTTTCTGCGATATGACTGTTTTGACTGAATCGAGCGTTTTCCGCGCTTTTCCATTTTGCAATTTCTGAGGGTAAAAATTTAAACTCTGAAAACAAAAATCGACTGATTCAGTTGACTTAAGTCCAAAAAGGCCTGAAAATCCTGTTTTGTCAAAGAGAGGCGAGATCCAACTACTTTGAAATCGGTCTTGAATGGAGGATTGTGGTGGCTTCTCTTGGGCAATGGGGCCTTATCGTGGGTTTTACGTGGAGCGATTTTTGATGAAGGAGCCTTAAATTCCCGAAGCCGACATAGAGTTTCGATTATTGAAATCTTCACGATTCCACAGCTTTTATTCTGGGTTTGAAGCTCGCTCTAGCCCCAGTTTGGGCTTTTACAATTATGAATAGTTTAAACCAAGCCCGTTTTCGTCTTATTTTCTAAGGCCCCAGCTAATCGAAAAACTTATAAGGAGGGAGAACATTATTTTATTCGCCAAAAGGGGCGAAAAAGTGAACC # Right flank : TCCCGTTTCTTCAAAGCGACCCTTCGCCTATCAAATTCGCAAACCTTTTTAGCGGTTATAGCCAACTTTGTCTGGGGGCAAAGAATGGTTGAGAGCGTTCAGGTCATCGTTGACCGCATTGAGAAGATTGAAAGGGAGCTTGAAGAGGTCAAGAGGGAACTCCTGAAGCTCCAGGCTGGGAGGGAGGAAGCCGAAGTGATCCCCGAGGAGGAATACCAGGAGCTGGTGAAAAAAGCCGAACGCCTGAAGAACAACCCCTCCGAGGGACTGAGCGCCGAGGAGGCCATCCGGGAACTCCTGGGCTAAGGTGGGAAAGTGTACACCGTCATCGTGGACAGGAGTGTCGTCAAGAAGGCCAGAAAGTACCTCAAGCCTGCCCAGCGCAGTAAGCTGGCCGAGTTCATCGAGGCCTTAAAGGAGAACCCCTACCCGAAGCCTCCCTACGATCTGAAGCCCGTTAAAGGGGAGAAAACAAAGAAAACCAACACCTACCGCCTTAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCAGCTTAAGCTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 1651711-1654491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1651711 30 96.7 37 ................A............. CTCAGAGACCTCATTATCTTAATTGACGAAGCCGTTG 1651778 30 96.7 38 ................A............. AGCAACGCAAAGATGTTCCAAGCCGTGTGGACGCCCAT 1651846 30 96.7 38 ................A............. CTTCTACCCTGAGCTGGTTAATCTGCTGCCGTACTCTC 1651914 30 96.7 37 ................A............. TAGAACGATGAGAAAATCGATGCCCACGACGACACTT 1651981 30 100.0 37 .............................. CCGGCCACGGGATACCCTGCGCTACCACCTTGCAGGG 1652048 30 100.0 38 .............................. ACGCTGATGGAGCGCCTGCGCGAGCTGGGCTACGAGAA 1652116 30 100.0 37 .............................. TACATTAAAGATTTAGTTAGCGTTACGGTATCCTCTA 1652183 30 100.0 38 .............................. TCTGTTGCATGATGTTCATCATCATGGGCATCATCATG 1652251 30 100.0 37 .............................. TTCTTATAAACTTCAACCGGCTTAGCCGGTGCATCAA 1652318 30 100.0 37 .............................. CAACATGGCCGACATCATCAGAGAGGCCCTCCTGTGG 1652385 30 100.0 37 .............................. TTGGATGGGAGTGATCGATGGAGAGAGTGATGAGGAG 1652452 30 100.0 36 .............................. GATTTCAGAAACGACTTTGTGTTTCCGCTGGACAAA 1652518 30 100.0 37 .............................. GGTACTGGTTAGCAGGCACTGCAACAGTGTAGGTATA 1652585 30 100.0 38 .............................. TAGGGAATTCTCAGAAATCTATGAGTACTATGAGCAGC 1652653 30 100.0 37 .............................. GCATAGGGGTTGTCTGGCTGTGCGGTTTCCTGTTCAG 1652720 30 100.0 36 .............................. GAGCTCAGATAGGGGGACAGGCGGGGGTACGGATAC 1652786 30 100.0 36 .............................. CCTCATAGCTATAACCGGCTTATCCGGCGCCTCCTT 1652852 30 100.0 37 .............................. TCGGTGGACAGACGAACAGCGGAAAAAGCTATTTTGT 1652919 30 100.0 38 .............................. AAAGGTGATATTCGGAGAAACGGAATGGAAACGTGAGT 1652987 30 100.0 37 .............................. TAAGTTCTGGGAGCTGAGTTAGGGTCTTCTTGCCGTC 1653054 30 100.0 38 .............................. GGAGGGGGAGCGATGAGGAGGTTAGGCATTTTAGTCCT 1653122 30 100.0 36 .............................. GTGTTGAGGAACTTGACTGGCAGGGAAGCGTAGAAT 1653188 30 100.0 33 .............................. AGCGGTAGTTACTTAAGTTACATTCAGAGCTGG 1653251 30 100.0 40 .............................. ACGAGCAGATGCAGCAACTCGTCCAGTTCACTGACGACGA 1653321 30 100.0 38 .............................. AAGCTGCTAGGTATCTCAGCACTGTAGGTAGTGCTGTT 1653389 30 100.0 40 .............................. TCAAGCTGCTCCGCTACCTCGCCAGGATGATCATCATCCG 1653459 30 100.0 36 .............................. TTTGTTCTTGGCTCTGATAAAGCGCTTTAATTTCGG 1653525 30 100.0 36 .............................. CCTCGGGGACAGGGTAAGCATAATATAGACGGGCAA 1653591 30 100.0 40 .............................. TTGTAGTACTCATCATAGCCGGCGTAGGGGTTGTTGAAGT 1653661 30 100.0 37 .............................. ACCTTATACGAGTGGACAGTCGCGATAAACACTTTCA 1653728 30 96.7 38 .G............................ ACCTTTAGGGTCTTCGTGAATGTGTCGTCTTGGAGACC 1653796 30 96.7 38 ................A............. AGGGCGTTATTTACCTCATCTATCCCGTGCCCGTTTAT 1653864 30 96.7 36 ................A............. AAAACCGCAGTAGCGAGGTAAGTACGGGAAGGTGAG 1653930 30 96.7 37 ................A............. CTCTCGGAATCCCACGCAAGTCGAGAACCTGATTAAT 1653997 30 96.7 37 ................A............. GCTGATTTAAACGGGAAAATATTTGCGTTTTTGCTAT 1654064 30 96.7 36 ................A............. ATGAGTGAAGCAGTATCTAACGACCTGGGGGCTGTG 1654130 30 96.7 37 ................A............. AGGCCTGAGGGCTGTCAGTGAGGGCGTAGGCGATGAA 1654197 30 96.7 37 ................A............. GAAATACAGGGCAAACGCCATTTTGTCATCTGTCAGC 1654264 30 96.7 36 ................A............. GTGAATGTTGGGGTCGAGCCTGACTGAGTATCATAC 1654330 30 96.7 38 ................A............. ATTATCTTTAAGGTCTGGGGGCAGCCCTGGGCTGATAA 1654398 30 96.7 35 ................A............. TGACAAGGCATTCCCTTAGCAACCGGGGATCCAAG 1654463 29 90.0 0 ...............CA........-.... | ========== ====== ====== ====== ============================== ======================================== ================== 42 30 98.6 37 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : GAATGGAACCTTATAATCCTTGCCCGGGGCCGTATCACGTTCGAAGGCCTTTGCAGGAAGGGAACTTTATTCCGGCTCCCATAAACGCCAGAAGAAGCCCCGGGAACAAACGGGAAGTCTAAAATAACCTTTTGTTACTGTGGAACACTAAGTTATGGCTCTGCATTAATCGTGTAACGAAATTTTTTCGAAAACCTGAACAAAGCCCGGAGAAGCGGAGAAGATGCCCTGTCCCGATGTAAACTGTTTCTTTTCGGGTTTTCTCCGATCTAAGCGAAGCTGGAGGTGTTCAGTCCCCTCCACCGGGCCGGGAAGTCCCATGAACATAGGTATACACCACGAACGACGGGGACTCTGAAAGCGATTCGGTTTAAATCCCGCCCCGTGGAGCCTCCGAATCGAGACCCCTCCGGGAGGAAAAACGGGGGCTTTGAAGAAAAGCTTATAAAATTGGAGCGCCCTTATTCCTCTATGGGGCAGACGGGGAAGAAAACCTCCCT # Right flank : GCGATGGCGCTCGAAGTAGACGTAGTGCCCCTTCTTGAGTTGCAATAAACTCAAAAAACTGAAAATCAAAGCAAAAGAAGCGCTTTCACTCCACCCTTCTCCCGACCAGCCGGTTTATCCTTGCCCTTATGCCCCTGTTTATCTTGAGAAGGAGAACCGTTCTCCTGCACCTGCCCGCGACCTTCTCCGGGACTTCACCGAAGACCAGCCTCCTGAAGAGGGGTTCTCCCGTTGCCCCCACCACAACGAGGTCGTGCTTTTTGCACTCCTCGAGGATGGCACTCACGGGTTCCCCGGGCACTATCTTCAGCTCCGCGCCGGGTATCTTCTCCAGGACGGGTTTCAACCTCTCCCGGAGCTTCTTCTCCGATTCCCCGGAGGAGTTCACGGTGAGAACCGTGATCTTTGCCCCAAAGGCCCCCGCGAGTATCTCCACAAGCTCCGCGCTCCTGACCGAGTGCCGCCCGTCCCTCGTCGGGAAGAGGATGCTTCCGATGGGT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 1726662-1728763 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1726662 29 100.0 37 ............................. GCACAATCCTGTTGTAGAGCTTCCTTCCAAGTTCAAG 1726728 29 100.0 37 ............................. TGCTTATCACAAAAACAACGCCGGGAGGTGGTGAGGT 1726794 29 100.0 37 ............................. AGCGTTAGCGTCGCGGTGGGCGGCTCGGAGGTCTTTA 1726860 29 100.0 36 ............................. CGTGGGACGTGTGCCGTTTTTAGGTCACGTTACCAA 1726925 29 100.0 40 ............................. CGTGGAAGACTACCCCATCACAGCCGAGCAAGCGTACGAG 1726994 29 100.0 36 ............................. GAGCAAAAAAATTATTGCTACCCCTGCAAATAGGCG 1727059 29 100.0 38 ............................. AGGCCCTTCAGCTTGAACTCGGCCTCGTAGAGGTTCCA 1727126 29 100.0 36 ............................. TCTAATTTCCATGGTCAACTGAACACAACCAATGAA 1727191 29 100.0 37 ............................. AGACTGACCAGGAAACCGAGGACCCTGGCCCTGTCCA 1727257 29 100.0 37 ............................. CGAACTCGGATATCCAGAGAGTGGCTACATCTTCACC 1727323 29 100.0 37 ............................. CCGGAATGAAGGTTGAAGAACTGGGATTGAAGTTTGT 1727389 29 100.0 41 ............................. CCCTGCTTCCGACCGGAGGCGCTTTCGCAGCGGGTTTCATT 1727459 29 100.0 42 ............................. TTGAGCAACCCCCCCAACACATCAACAGCCTTATCCGGGTGA 1727530 29 100.0 37 ............................. ATGCTGGAGAGAAGAGACAAAAGAATCGGAGAATTCG 1727596 29 100.0 36 ............................. CGACCTCCCTTATGTGGACTCTCCAGGCCGTGGATG 1727661 29 100.0 41 ............................. GCGGAGTACTTATCTGCGGCCCTGTACGAAAAAACTCCCCT 1727731 29 100.0 39 ............................. AGGATTGGGGCTGGCAGAACTACGCGGAGCTCATCGAGT 1727799 29 100.0 36 ............................. ACAGGGTACGCAACGAAAGCAAGCAGGTGCCTGTTG 1727864 29 100.0 35 ............................. AACAACCGTTCATTTTGTCCCGGTGGACTGAACGC 1727928 29 100.0 39 ............................. CACCCCTCACCTTCCGCAGCTGGATTTTTAGGGGTTCTT 1727996 29 100.0 39 ............................. AAGAAGATGCAGGTGGTAGCCAATGAGGTTCCAAAGAGA 1728064 29 100.0 36 ............................. TCGTGCCTAGCGTGTCCTGGCTGGTCAGGGTCAGGG 1728129 29 100.0 36 ............................. CAGCGTCAGGATCAGCAGTATATTTAGCTGAAAGCT 1728194 29 100.0 39 ............................. AAGTAACTGTCAGACACTAGGCACACAATAGGCACACAA 1728262 29 100.0 36 ............................. CCCCCAGTTTCCACAATAATGGCCAAAAGGGCCCAC 1728327 29 100.0 42 ............................. GTGCCCTGGCAGTAGGGGCGGGCACGGGTCGGGCTACAGATG 1728398 29 100.0 36 ............................. ATAGGCCGAGACGACTTCCGAATTCTGGACACGCGA 1728463 29 100.0 37 ............................. CCAGCATCAGTACAATGTACATCGCCAGGACAAAGCC 1728529 29 100.0 44 ............................. AGGCGCTTGACGACGCCTTAACGCCCGATGAGGAGAAGATAAAG 1728602 29 100.0 39 ............................. TTTAACACGCTTTTGCCGGGGATTTGTCAACACCGGGGG 1728670 29 100.0 36 ............................. TCAGCTCGTCCACCAAAACGTTGAGATTGTCCTGCA 1728735 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ============================================ ================== 32 29 99.9 38 GTTTCCGTAGGACATAGTTGTGTGGAAAG # Left flank : AGTAGCACCGGCAGGGCCGGAAGATGTCTCACAGTTGTTTTTATGGTTTTGAAGTCTGCTCTTTTAGGGATTTTTTATTACGGGTCTTAAACTCGCATTTCCTTTATTGGGGGGGATAAGAGTGGACGCTACTTTCCGTTTAACACATTAGTGGTAATTTTTAACAAAATGTGTCCACCTGAAAAACGAGAGTCAGCAAGCCCTGAGAGATTAATCGGAGGACTGTAAGGGGATTTTAAATAGTCAATCTATCACGAATAAACAGGGTTTTTGTTTTTGCTGGCGTTCACGGGTTTAATTCTTCAGATCCAAATTTCGATTTTAGTATTTGCCACCAAAGCCAAATCCTGGAGTGCAATAATCCATAAAAGGCCTGGAAAAGCTTCTTTATTTCTGTGCCAGATTTATAAATCGGATACAGTGTTACAAGTCTCCGGAAAAAGTCTTAAATAGGAGTTCGGAGATCACTTTACTATCCCATTAGGGGGATAAAGTCAAGG # Right flank : ATAGCACTTTATGTTTTCTGAAGAGCATATTGTGTGGATTTTATGGGGTGTTCTCCGTTGTGATCTGAAAACTTTATATATAACCACGTTTTATTTATGTCGCAGTCTTCGCAGCATGGTGACAGATATGCGAATAAAGCTGTCCCTACAGCCAACAGATGGCGAATTCAATCAACCAAACAAACATGCAGTCCAGGGATTCATCTACAACATGCTCAGGGATACCCGATACGAGGAAAGACACGACGAACCCAGGTTCAAGTTCTTTACGTTCTCGGACTTCTTTAGAGACCGGAAAGGAAGACTCACGTTCATAATATCCTCCCCAGAGAGAGGCTTTATAAACGCACTCTACAGCAAACTCAAAAAAAGAGAGCACGTCTACATCGGTAAGCACCAGCTAAAACTCCTCGAGGTCACAAAGTTTGATGTCCCGCTGAGAAACAGGTTCCAGACGGGTTCGCCAATTGTAATCTACAAGAACTCCAGAGAGAACGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACATAGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 1733089-1735977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015103.1 Thermococcus siculi strain RG-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 1733089 29 100.0 42 ............................. TACTTTTTTTGCCACTTATCATTTTGGATTTAGTGGCGACAT 1733160 29 100.0 36 ............................. ACAGAGAATGCAATCTTCATTCGCCTGCTGGATAAG 1733225 29 100.0 37 ............................. AAATGCCCTCCAGCCCCAGTGCGAGGATTGAATACTC 1733291 29 100.0 38 ............................. GACCGAACGGCTGGCTGGGGGGAAGTTTTCTGAACTAT 1733358 29 100.0 38 ............................. GCATTTCCAGCACTGCCTCTCCGTCTTGGCTCCTAAAC 1733425 29 100.0 37 ............................. TATATGTTGTTGTCGTTGTTCTTTTCTGGGGTGGTAT 1733491 29 100.0 36 ............................. CTCAATACAATACAATACAATACAATAATGATAATG 1733556 29 100.0 37 ............................. TCAGCACTACCACTATCCGCCGCAAGCCAAGTCGTGC 1733622 29 100.0 38 ............................. ACAAAATATTCGGGAATGGCGGGGCACATTATACCGGG 1733689 29 100.0 38 ............................. AGAGCCTGCAAAATCATAGCTTCCGTATAGTCCTGAAC 1733756 29 100.0 36 ............................. AGAGTCATTGGCATCACCCTCGCAGGAATCTTCTAA 1733821 29 100.0 38 ............................. GCGTGAAACTTCGCCAGTGGCTCGATCACTCGCGCCTC 1733888 29 100.0 38 ............................. AACTCATCGAGGAGCGCATCTTCCACCGCCTCCTTTAT 1733955 29 100.0 34 ............................. ATTCTCAATGGTTCTGAGCTGATTCTCCCTGACG 1734018 29 100.0 37 ............................. GGGCTCTCCCTTGGTGAAATCATAGAAGTTGCACTAG 1734084 29 100.0 38 ............................. TTTTCAGAAACATCGGCTTCAAAAAAAACATTATATAC 1734151 29 100.0 34 ............................. GACATGCTTGACCCTTACATGCCTCAAATGTAAG 1734214 29 100.0 37 ............................. TGAGAGCACTACTTGGATAGCGGCCGACAACGGGGAC 1734280 29 100.0 36 ............................. GCTCATTCTGCCAGACCTCGCGGTAGGCATCAACTT 1734345 29 100.0 36 ............................. CACAGACCGACGCGGTTCAGGAGTACCTCAACTGGC 1734410 29 100.0 36 ............................. TAGCACTCATGCCAAAAGAGTTCGCCAACTACCTTT 1734475 29 100.0 38 ............................. ACGACCTTAGACCCTGGAGGATCTCATCCCAGGATGAT 1734542 29 100.0 35 ............................. CTGGATAATGGTTTCTGATTTCTAATCTTTTTTCG 1734606 29 100.0 38 ............................. AAGTGTCCACCTGCTCCAGTCCTCGGATTGAACACCTG 1734673 29 100.0 51 ............................. TGGTCATACACTATCAGAGAGTCCTTTAGGTCAGGTGTCTATGTCGGACAC 1734753 29 69.0 22 AAC.ATCC.A.G................. ACTTATATAGTATGAATATATT Deletion [1734804] 1734804 29 100.0 39 ............................. AACTGCACAAAAACCGGTATTCTGGGACGTGTTCTTTTG 1734872 29 100.0 36 ............................. TGGTCATACACTATCACTGGTATGCCCAGTTCACTG 1734937 29 100.0 37 ............................. CTGCTCACTCCTCCTCGGAGCGAGCATTATAATGGGT 1735003 29 100.0 39 ............................. ACGTCCTGAACAAGTGTGAGCATTGATGTATAATTGTGC 1735071 29 100.0 36 ............................. TGTCTAAGGTCCTTCGTCATAATATGACGCCAGGAC 1735136 29 100.0 43 ............................. CAGGTGATCTGGCTGTTTTTTGGGGCTGCCTTTGCTATTTCGC 1735208 29 100.0 40 ............................. AAGAATAGCCTCCCGAATGCTCGTCCGCAACCAGCGTCCA 1735277 29 100.0 38 ............................. AAGATAGCCTTTGCATCACGTAATGCCTTTCTGAACTC 1735344 29 100.0 36 ............................. CTCAGAGAGTCCTTTGGAAATCCTGCTGCCCGAGGA 1735409 29 100.0 37 ............................. ACTAGACCGTCGACGGTGGAAACTTTCAAAAAGCGCT 1735475 29 100.0 40 ............................. AAGAAGGTTGAGTTTTACGATGAGCAGGGACAGCTTTTGG 1735544 29 100.0 40 ............................. TTGATGTCCTCACCGATCGAAGTTGCGGGGGATCCTAGGA 1735613 29 100.0 40 ............................. AAGTCGCCGTCCCCGAAAACTGGGCGGTCTTCAAAGGAAA 1735682 29 100.0 40 ............................. TTGCCCCTGTATGCTGTCCTCCCAAGCCCCTACACACTGT 1735751 29 100.0 37 ............................. TACCTGCTTTCTGCCCTTTTACCCAGCCAGACTACCA 1735817 29 100.0 37 ............................. GCATAAGCTAGATAGCCCATAGAGGAGTATTCCAACG 1735883 29 100.0 37 ............................. GCTGTGATAACTACCGTGTCCCCCGTCACGTTGTAAC 1735949 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 44 29 99.3 38 GTTTCCGTAGAACATGGTTGTGTGGAAAG # Left flank : GGTGCTACTCTTCGAAGGAGAACCGGTTTTTGTCTTTTGATTATCTATTTTTACCATGTTCTAGCCCTCTTTCCAGATTCACAGCTTTAGAACCGGTTTTTAACCTTAATCCAAACGTAAGGGCATTTTCTTTTTTTGTCTACCCCGAGAGTGGTAACACCAGGGAGAATGTACCCATTTAACATTAACGGAAGGAAAGCAGCCCAAGGGAGGTGTACCCCCATTAGAAGCGAGCTTAGATGGTGACAAACGTCTTAAATGCCTTTAATTCATTTTTGAGGGTATTATACCAAACAGAATCCTGAGATCATGATTTCGATATCTTAAAAAACCGAAACCGGGTAGATCCATTGTTAGTCAACAAAATAAACTGTCCAACGCCCCACTTGATTTTTGTTCCACATTTATAAATAACTTGCAGTGCTACGGGTTCCCGGGAAAAGTCTTAAATATAAGCTCAAACAGTACTTTATGTGTAAATCAAAGGAAAAAGAGTGAGA # Right flank : GCGAAAGTTTGAATTCCTCGCTTGGGGTATTATGTGGATTTCCGTAGAACGCAGTCGTGCGGTGATGCTATGAAACGGCCCGTGTACATAACCCAGATGGGGGTGCTTGAGAGGAGGGGCAACACCCTCTTCCTTGAGAACGAGAACGGAAAAAAGGCGATACCCATAAACTCGACCAGCGAAATCCATTGCTTTAAGCCGGTGAGTCTCACCAGCGGGGCCATGAAGCTCCTGTCGGAGAAAAACGTGCCCGCCCACTTCTACAACAAGTACGGCTATTATAGAGGTTCCTACATGCCGATCGAGGGGCAAATAAGCGGGACCGTCGTTATAAAACAGGCCAAGCACTACCTCGACCCCGAAAAGAGGCTTTACATAGCGGAGCAGTTTCTGGAGGGCATAAAAGCCTCGATGGTGGCCCTTCTCAAATCTCAGAGGGCGGACTACAAAAGCATAGCAGAGATTGAAGTGGAGGGAACCACCCCGGTGGAGCTTATGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACATGGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //