Array 1 1180-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCN01000065.1 Hymenobacter rubripertinctus strain CCM 8852 scaffold_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1179 29 100.0 36 ............................. CCCTGGGCCTGGCCGCCAACAGCGACAACCCGGTGT 1114 29 100.0 36 ............................. GAAGCCGTTTCTGGGCCTTAGTGGTCTGCACCAGGT 1049 29 100.0 36 ............................. CTAGGATGGGGGCTTTTTTGTGTCCTTTGCCGCCGG 984 29 100.0 36 ............................. ACCACTGGCGTCTGGCCGTGGACAGCCACAATACCA 919 29 100.0 36 ............................. CCTATTGGCGGCTTCGTGGATCGTGGCGACCTATTA 854 29 100.0 25 ............................. ATTGCTACGCAGGTAGCGGCCTCGT Deletion [801] 800 29 100.0 36 ............................. GGCTCACTATGCCCACTTTCCGCGCCTGGTCGATGT 735 29 100.0 36 ............................. AGCAGTACTGCGAGCACGTGGTCTTCGTGCCGGATA 670 29 100.0 36 ............................. CCGAAGACGACTTCAGTCTCGATAAGCTCATCAAGG 605 29 100.0 36 ............................. ACGGCACCTTCCGCGTGGAGGACCATGCTGACCTGA 540 29 100.0 35 ............................. AGGAAGGGGCGAAGGCCACCGGCTTCTATTGCACG 476 29 100.0 36 ............................. TCGAGGTGCATCCGGCCTACTGGGAGTGGAAATACA 411 29 100.0 37 ............................. AGAGCATCGACGAGAACCTGCGCAATCTGGGCTACAG 345 29 100.0 36 ............................. ACGTGAGCCGGCCGCTCAAGCAGTTGCCCGAATTCG 280 29 100.0 36 ............................. TTAGTAGATGACGCTACGGAGTACGGCCGTTGTCAG 215 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 100.0 35 GCTTCAATCGGACTGTGTGGAATTGAAAT # Left flank : AGATGGAAGAGTACAAACCCTTTAAAGCCTGGTGGTAAGATGTACGTACTGCTGGTGTATGATATCCGGGAGAAGCGCGTGGGCAAAATGCTCAAACTCTGCCGCCGCTACCTGAACTGGATCCAAAACTCGGTGTTCGAGGGCGAAATCACGGAGGTAAAGCTGAAGGAGCTACTCGCCAAAGCGCATACGTTCATCAATCCGGACGAAGACAGCATCATCATCTTCAAAAGCCGCAGTCAGCAGTGGCTGGAAAAGCAGGTAGTCGGTCAGGAGCGCAATCGGCTGGACACCTTTTTATAAGAGTGAGGAGTCGTCGGTGCGGTAAGCCGCTAGTTCGCCATGAGGCCATGAAGCGCCGGCAACTACTCAAGTAGCTGATATTCATGGGTCGTCGCTGGCCAGGCAAAATCCGGCTATTACTCACCGACGACTTTAGCACGTTTTCTTTCGCCTGAAAGAGTAGCTTTACGGTACCAAGGACGCTGATTGCGTCATGG # Right flank : TATAAGCACGTATATCTGCACGCTATTGTCGCCTAATAGGCGGTGGTATAATGCGAGGTGATTCAGGTTGGCGTTAACCGACGGTTGTGCTCGTCGATGACGAGTTGGATGCGCGTATGGTGCATTTTCTCGCACCGGCTAAACGAGCAGGACTTGCGCACCAACACGCCGCACTTTTGGCGCAACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGGACTGTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 157-576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCN01000117.1 Hymenobacter rubripertinctus strain CCM 8852 scaffold_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 157 29 100.0 36 ............................. ACGGGCACGTTTGGGTAAAGAAGTACGACCGTAATG 222 29 100.0 37 ............................. CATTCTTGTCGTGAGTGACTTCGAAAGCAATGTCTGA 288 29 100.0 35 ............................. TAAACCCGTCCCCAGGGTGCCGGGAATATAGCCAA 352 29 100.0 36 ............................. CGGTGGGCGCACTGCAACCCATTAGCTTAGAAAACT 417 29 100.0 37 ............................. AGGCCCTGTTGGTGTTGGCGAGGGTGTACTCGATACG 483 29 100.0 36 ............................. ACGAAAGCACCGCCGAGGCCCGGCGCGTGCTCGATG 548 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 36 GCTTCAATCGGACTGTGTGGAATTGAAAT # Left flank : CTTGGTGGCGGCAGGCTTTGCACTGGTATTTGGGCTGGCCGTGGCGGCTGCCGTTCTTGCGCAAGTCAGCACTGCTGCACTTGCCACACGTCAACGTGGTCTGAAGCATGGGAGTAAGATACTACTCACCCCGCATTATACCACCGCCGCCTAATAG # Right flank : ACTGCCGGGCCTACCAAACCTACCTGCGCCAACTGGGCTTCAATCGGACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGGACTGTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 47-1633 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCN01000022.1 Hymenobacter rubripertinctus strain CCM 8852 scaffold_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 47 29 100.0 36 ............................. GAAGCCGCAATATTGACGACTTGCAGCAGCAGTTGA 112 29 100.0 35 ............................. TGAAGTACAATCCGGCTACCAAGATTTTTAGCGGC 176 29 100.0 37 ............................. AATACGCAGCCAATTGGCGCAGCATTAAAGGTTGCTT 242 29 100.0 35 ............................. TCGATCGTGTTACCAGCACGACCGGGGGCTATCTG 306 29 100.0 36 ............................. TAGAACCTCAGAAATTGGGTAGCTAAAACCGTTATG 371 29 100.0 36 ............................. TCCGCAAGAAAGACCGCAAATAGTTGAGTCTTCCGG 436 29 100.0 36 ............................. CTGTTTCTGGTTCTTGAAGCCCGCGCCTATCCCGGG 501 29 100.0 35 ............................. GAGATCAGCGGGCTTAAAACCTACGAAATCGGCAC 565 29 100.0 36 ............................. GGCCCGGTCCCGAGTGCGCGCAGCAGTGAGGCCACG 630 29 100.0 36 ............................. ACCAAGGCCGCACGTCGAAGCCCGGGCAGTTTTTTA 695 29 100.0 36 ............................. CAGATCTTTTTAATTCCAATTGGGCAGAGGTTAGCC 760 29 100.0 35 ............................. CTGGACATTGGCGTTATAACCGTTGGATACTTAGC 824 29 100.0 36 ............................. TGGTTTCGTCGCTGGCCCAGGCCCCGGTGCCGCCGT 889 29 100.0 36 ............................. GGGGCGGACGGCGGGTGGCTCGTGAAAACACAGGCC 954 29 100.0 35 ............................. AGCACCTTGCGTACCCGCGTGGCCGTGTTCTGGTA 1018 29 100.0 36 ............................. ATAGGTGCGGTTGAAGCGGGCAATGGGGTCGTACTC 1083 29 100.0 36 ............................. AATTATCGGGCTAACAGCAACACCTAAAAGGCTTGA 1148 29 100.0 36 ............................. TAGTGAAATGAAGAAATATTTAATCAAAGAAAGATT 1213 29 100.0 36 ............................. TGAAACAAGCATTCTTGAATTTCAAGAAAGACTAAT 1278 29 100.0 37 ............................. TGCACAATGCGGGTGAAAGAGCCGGTGGCAACAACAG 1344 29 100.0 36 ............................. GGGGCTCCACGCGCAGCACCTGCCGGCCCTGCCGCC 1409 29 100.0 37 ............................. TTGAAGCTGTATTGCGCCGTTTTCCAGTCGTACACAA 1475 29 100.0 36 ............................. ACCTGGGCCGCTGCCGCCACGGACCGCGCCGCCCAC 1540 29 100.0 36 ............................. AGCTGCGCGCCCAGGGCCTGGAGGCTGAAACCGAGG 1605 29 86.2 0 .......................C.GTG. | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.4 36 GCTTCAATCGGACTGTGTGGAATTGAAAT # Left flank : GGAATTGAAATGAAGCCGCAATATTGACGACTTGCAGCAGCAGTTGG # Right flank : TAGGCATTTGTTGCCTTATCAGCATCCCTGCCTAACTATACACATGGATGAGGTAGCTTTCCTGCTTTCATTCAGTGTGCTTACCCTCTTTATGATTCCCCTCCCCGATTCCGGCTTCGACTACGTGGCGGCGTTCTACGACCCGCTGGCCCGGCTCGTGTACGGGCAGTCGTTGCAACTGGCCCAACAGACGGCCCTGGATCGGGGCTTGCCGCCGGGCAGCGCGCGGCTGCTCATCATTGGCGGGGGCTCGGGCTCGGTGTTGGGCGAGGTGCTGCGCCGCCGCCCGCAGGCCCGCATTGTGTACCTCGAAGCTTCGCCCCGGATGCTGGTCCGCAGCCAAAGGTATCTGGCCCGGCACTACCCGCAGGCTGCCAGTCAGGTGGAATTCCGGCTGGGCACGGAGCAAAGCCTGGGGCCGCAGGAGCAGTTTGCGGGCCTGATCACATTCTTTCTGCTAGACTTATTCGAGCCTACCCGGCTCCGGCGCATCGTCGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGGACTGTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //