Array 1 103378-108567 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUZM01000005.1 Xanthomonas nasturtii strain WHRI 8984 scf_5921_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 103378 28 100.0 33 ............................ CTGCCGCAGCCGCCGCACCTGCGGGCCTGGGGT 103439 28 100.0 32 ............................ AAGTTGTAGGAGAAGGAGAACATGCGCAGCTG 103499 28 100.0 32 ............................ GGCCGCCACCGCGGCGCTGTCCGGCGCGCCTT 103559 28 100.0 32 ............................ TGATGATCCGGCGATCCTTCGCGCCATCCTGG 103619 28 100.0 32 ............................ TTGATTCGATTCGGTCTAACGGTGCTGGGTGT 103679 28 100.0 32 ............................ TAAGAGGTCAACAAGCCATGACAACTATCACT 103739 28 100.0 32 ............................ GCACAGCAACCAGAGGTGCATGGTGAAGCGCT 103799 28 100.0 32 ............................ ATGCTTACTGGTCGATAGCTGGCGGTTAGCGT 103859 28 100.0 32 ............................ TCCCCCCCCTGGTGAAGTGCCGACGCACGTTC 103919 28 100.0 32 ............................ CGTGGCAGAGGAGGCGCCCAAGAAGCTCGTCC 103979 28 100.0 32 ............................ TGCGCGCCCTCTTCGTTCTCGCAGCACTGGCA 104039 28 100.0 32 ............................ CAAACGGTTCGCGTACGCCGCGTTGCCCAGGC 104099 28 100.0 32 ............................ ATGAGGCAGATCACTACCTTGCGCTGTTCTAC 104159 28 100.0 32 ............................ CGCAGCTTCCACTTCTCAATCGCCCACTCGTA 104219 28 100.0 32 ............................ AACGACTACCCGCCGGTGCGCGCTTACACACA 104279 28 100.0 32 ............................ AGTTACCGGTGCTGTCCCAGAACAGCTTGATG 104339 28 100.0 32 ............................ ACCTGTCCTGTCCAAAAGTGATCTTGCGTGGT 104399 28 100.0 32 ............................ CACCCATCGTTCGGCTGCGTGTTGCCCAGATA 104459 28 100.0 32 ............................ TGCACGGCATCGTGCCCCAGGCTCGCCCCTAC 104519 28 100.0 32 ............................ AATTGGTCAAACACTTGCAGGTTCTTCTTGTT 104579 28 100.0 32 ............................ TTGACGTCCAGCAGCGTCACGGCCAATTCCAA 104639 28 100.0 32 ............................ TTGTTGAGCGTGGGGTAGTAGACGCGCTCCAC 104699 28 100.0 32 ............................ TCGCACGGCAAGCCCTCGTAAACGAACTGCCG 104759 28 100.0 32 ............................ TTCGTGCGTCGTCCTGACGATGTAACCCATAA 104819 28 100.0 32 ............................ AGGTCGAAGTCCACATATCCAACGACACCCGC 104879 28 100.0 32 ............................ TCAACATCCAGGTCGGCATGAACCTGGCGTCG 104939 28 100.0 32 ............................ ACGTAACGTGTGTGTCGGTCACTGCGGTCACC 104999 28 100.0 32 ............................ TTGCTCATGCTCAGCGCGTGCAACTGCTGGCT 105059 28 100.0 32 ............................ ACCTCGCGCGGCGGGCGCGGCTTGCCCAGACC 105119 28 100.0 32 ............................ ACCGCCGCAGGCTGCTGGCAATCTGCCGCCAC 105179 28 100.0 32 ............................ AGAAACAAAGGCTGCTGAGCGAGACACTCGCA 105239 28 100.0 32 ............................ CTTGGTGGGGAAGCTGGTCAGCTCGTTTTCGT 105299 28 100.0 32 ............................ GCGGCGCCGCCGATCTAGGCCAGTGGCGTGGC 105359 28 100.0 32 ............................ GTCAAGGTGCGCAACCGCTCCCGCTTCGCCTA 105419 28 100.0 33 ............................ CTCATGCGTCGTCCTGACGATGTAACCCATAAC 105480 28 100.0 32 ............................ AGCGGGTGGTCCTGGTCGATCGACTTCGGGAT 105540 28 100.0 32 ............................ GGCTACGCCGACCGTCGTGAGCGCCGGCACGC 105600 28 100.0 32 ............................ TTGAGGTAGTGGCTGCGGGATCCGGTCACAAG 105660 28 100.0 32 ............................ CTGTAACGCGGCAGTTTGTGCTACCCCCCATC 105720 28 100.0 32 ............................ GAGCGCATTGGGCGAGCATGACGGTGTGCGCC 105780 28 100.0 32 ............................ AGGTGTTGCGCGAGCGCAGCATCGGCCTCATT 105840 28 100.0 32 ............................ ATACGCGACGGTTTCGATATTGCGCGCCACAC 105900 28 100.0 32 ............................ TCTGGGAGGGCCAGGGCGGCGAGGGGAATGAG 105960 28 100.0 32 ............................ GGAAGCTGACGCACCGCATTGCTTAATACGTA 106020 28 100.0 32 ............................ ACCTCGATAGGGCCGGTGAACGTATCGCTAGA 106080 28 100.0 32 ............................ ATACTCCCGCGCAGCTGGTTGACGCTCTGTTT 106140 28 100.0 32 ............................ CGAAGATGTGCAGCCCCTTGCCGCTGCTGCTG 106200 28 100.0 32 ............................ ACCGACGCGCACGCCGGGGGCTGCTGCGGCGT 106260 28 100.0 32 ............................ ATCGGCAACGTGCCCAGCTTGCCGGCATCGCC 106320 28 100.0 32 ............................ TATCGTGTAGACAGGCGCCGACGCCTTGCTCA 106380 28 100.0 32 ............................ ATCGGCCTCAGACTCGCATGCGCTCATGCCAG 106440 28 100.0 32 ............................ CAACAGGAGCAGGGACAGCAGTAGCGAGATAG 106500 28 100.0 32 ............................ AAGTTCAACGAAACCAACATCGCGCTCAAGGA 106560 28 100.0 32 ............................ CCGCCACGATTGCCATCAACAAGGATCACCCC 106620 28 100.0 32 ............................ TAGGCCGCGTCGATGATAACGGGGATGAGGTT 106680 28 100.0 32 ............................ AAACCGTAGGTGTCACCGGTAGCTCTCAGACG 106740 28 100.0 32 ............................ GTTCCAGCCATCGCGCAATGCCAGCTTGCACG 106800 28 100.0 32 ............................ AGGATCGTTGAGCACTTCCGAAACGTTTTCTT 106860 28 100.0 32 ............................ AAGCCCGGATGACGCAATGGAGGAATGGCTAA 106920 28 100.0 32 ............................ TGCCGCTGGGCCAGCGCATGCGCACCCTTCGC 106980 28 100.0 32 ............................ TTCCCGCCGATCATGCCCGGACCCCATCACAG 107040 28 100.0 32 ............................ GAAAGCACGCAGCAGCTCTATGGCGTGCTGGT 107100 28 100.0 32 ............................ TACAAGTACTGGCCGAAGACCGACCGCCTGGA 107160 28 100.0 32 ............................ GTGTCCTGCACAGACCACGGCTTGCTGTCGTC 107220 28 100.0 32 ............................ ACATTGCCGAGGCTGCACGCCGTGCGCGTATG 107280 28 100.0 32 ............................ GCATCGAGGAGATGGACGGCGGCTGGCGGTTG 107340 28 100.0 32 ............................ CTGACTGGTTTCCGGAAGGTGCACACAACGCC 107400 28 100.0 32 ............................ TTCTTCCGCTTCTTAGGGGTGGCGAACTGAGC 107460 28 100.0 32 ............................ TGCCGCGGATGCGGTGGTGTTGGGCGATGGGT 107520 28 100.0 32 ............................ AAGCCGTTCAATTCTTTCAATCGCGATTTAGC 107580 28 100.0 32 ............................ ACATCGAACGTGTTGAAGGTGTGCCTGCGATG 107640 28 100.0 32 ............................ ATGTCGCGCAGGCGTTGGGCACGGGCGGCAGC 107700 28 100.0 32 ............................ GTCTTCGCCCTGCAGCGGGGTGCCGTCCAGGT 107760 28 100.0 32 ............................ ACCAGCAGCAGCGGTCCATTCATCGGCACCCA 107820 28 100.0 32 ............................ CGGCACATCTTCGAGCGCTTCATGATGCGTTC 107880 28 100.0 32 ............................ GTACGACGAACGCATCCATGCCAAGACCAAGA 107940 28 100.0 32 ............................ ATGACCGTTCCCCCTGACATCGCAGCGGCAGC 108000 28 100.0 32 ............................ GATGCGAATGCCGGGCGCAGCAGCGATACGAC 108060 28 100.0 32 ............................ AACAGGGTTAGGCACAGCAGTAGCGAGGTATT 108120 28 100.0 32 ............................ GGTAACAGTGATGAAAAACTCATGTCCTACGC 108180 28 100.0 32 ............................ GCAATTAGGGCACACGCCGTTGTTCTGATCGT 108240 28 100.0 32 ............................ ATTCGCGCTTGATCGTCGGCGGTCCGTTGAAA 108300 28 100.0 32 ............................ TGATCACCTTGTTCAAGTCGGTGTATGCGCAC 108360 28 100.0 32 ............................ CGGATGCCCTGCGCAGGCCCGGCGCCGTGATC 108420 28 100.0 32 ............................ ACCCACCCCAGCCTGCAGCGGCGAACGAAGGT 108480 28 100.0 32 ............................ TGGCCGACCAGCTGCACGGTGCGTAGCACCCC 108540 28 92.9 0 ............G.........G..... | ========== ====== ====== ====== ============================ ================================= ================== 87 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCTTGCAAGCGTTGATGGCGAGCGCCTGGCTACAGGGGATACACGATCACCTGACGGTATCGCCCATTGTCCGCGCTCCGGCCGGCAGCCAGCACCGTCAGGTCACCCGCGTGCAGGCCAAGAGCAGCCCCTCGCGCCTGCGTCGCCGCGCCATGCGGCGGCACGGGATCGATGCCGTGACAGCCGCCCAATGCATCCCGGACGCGGTAGCCGAACAGTTGTCACTCCCCTTCGTGGTACTGGGCAGTTGCAGCACCGGACAGGCATCGTTCCCACTGTTTATCCGCCATGGCCCCCTGCTATCTGAGCCCAAGAACGGCAGCTTCAACAGCTATGGTCTGAGCCAGGAAGCGACGGTGCCATGGTTCTGACCCTTTTTCCGGGGTAGAAAAAGGCGGCTTTAGAATCAAGCACTTGGCAAGCACCTCTCTCAAAGGGTGCCTGCCTTTGTTTTGGCACAATTCCCATATCTATCAATCATTTATTTAAATTACACCCTT # Right flank : AAACTAGCGAACCGAACTGTTGTTGAGGCGATCAATCTCTCCTGCGCATTACGCGCGCGCTCACTCGCGCCCGTAAAGCCCCAGAAACATCTCCACCGCCGATTCGACGACCTGCGCCTGCTGGGCGTCCGACAGTGGCGGCTGCCCCAACGCAAGCTGCGGCCAGAACGCAAATCCCTTGACCAGCGCCTGAAACTGCTGCGAGGCGAGGTCCGGGTCCACCGGCGCCAGGCGGCCATCGGCCGGCGCGGCACGCAGCCAGGTGGTGGTGCCCTCTTCCTTGCTGCCCAGTTGGGCCAGCAACGCGCGTGCGCGTTCGGGGGAATGGATGACTTCGGCAATCGCCACGCGCGACAGGTCGATGAAGGCCGCATCGTCGAGCAAGCGTAATTTTGCTGCAGCAATTGCGTCAACTGCGTGCGCAATCCTTGGTCGGTGCGATAGGCCAGGCTCACCACCTCGGCGCTGCGTTGCCACAAGCCGCGCAGGATCTCTCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //