Array 1 28054-22664 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGT01000100.1 Acetivibrio thermocellus YS ctg9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 28053 30 100.0 37 .............................. TCTTCATCATCGGATATCTTTCTTTCCATTTTTGGAC 27986 30 100.0 37 .............................. TTTGTTATAGAGAGTCATTTAATCAATATTGAATTAG 27919 30 100.0 36 .............................. TGACAGCCCAAACGAAAAACCCAATTGCTACATTCA 27853 30 100.0 36 .............................. TTTTGAAGATAATTTTGGAGAACGGGCTGCAAGAGA 27787 30 100.0 36 .............................. TTTCATTTAGAACTTGATTCGTCATATCATCTCTGA 27721 30 100.0 37 .............................. CCAAGAAAAGCGGCGACAAGATTACTTCGATTAAACC 27654 30 100.0 38 .............................. ATTTTTTCAAGGATGTATTCGATGTCTTCATCTCTTCC 27586 30 100.0 37 .............................. TAGCTTCGCATGAAGTTTGATTGTATCACGCTATTGA 27519 30 100.0 37 .............................. ATATATCTACTTTCTGAAAACCTCCTCACAAAACAAC 27452 30 100.0 37 .............................. TAAGAACTAGTCTATCAGAAATATCACCATTTAAAGA 27385 30 100.0 36 .............................. CAGATGGGATGAATAAGGTCTTTAAATCCTCTTTTA 27319 30 100.0 36 .............................. CAATATATATCAGCATTTTCCAAAATCCAATCCATT 27253 30 100.0 38 .............................. TCTTGATGACTATTTTGGATGGTTTGATCCCGTTGCTT 27185 30 100.0 36 .............................. CACTTTTTGAAAGTATAAATGAGGAGGTATTGAAAG 27119 30 100.0 38 .............................. ATCAGTCTAATACTGGACGTAAATATATAGGTGCTATC 27051 30 100.0 37 .............................. GTATCAACAGTAAATTCCCCATCATACACCTTATTGG 26984 30 100.0 38 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAAG 26916 30 100.0 36 .............................. AAATTACTATTGACAGTATAAAAATATATGATACAA 26850 30 100.0 36 .............................. ACTATTACAAAGGCAAAATTGCTTAGAAATGAGGAG 26784 30 100.0 36 .............................. GCATTTGAACATATCATGACCTTCCCCGAGGCAGAA 26718 30 100.0 40 .............................. TCCCTGATTTCAATTCTGCCGATAAGTTCAAATCCAGCCC 26648 30 100.0 38 .............................. ACTCTTCTTCCATCCGAATAGGTAATACAGTCAATTCG 26580 30 100.0 38 .............................. TTTGTCAGTCTGATTTTGATGTTCAAACTGTATTCCCC 26512 30 100.0 36 .............................. CACACGCTTTCCAATCCTTGATTGGTTTTCTTGCCT 26446 30 100.0 38 .............................. CGCTGATATGTGCTGCGACGGCTCATATGTATATGCAG 26378 30 100.0 37 .............................. TTTTGACTGGTCCAGGTTCCACCCATATTATCACTCC 26311 30 100.0 36 .............................. TACCTGATTTTGCAGTATGCGGTAGTCACTATTTCG 26245 30 100.0 36 .............................. TAGTGTCAATGTTCTTCCAAACTTCTTCAGGGAGGT 26179 30 100.0 36 .............................. AGTATTTCCTGCAAGGCTTCTTCTGCATCTACTATA 26113 30 100.0 36 .............................. TAAGCATCATGATGGATAAGGTCGGTACCTTCCCGA 26047 30 100.0 38 .............................. AAGCAGTTTGCCAAATCCTATCACTAAGTTGAGTCACA 25979 30 100.0 36 .............................. TGCTAATTAGCTCGTTGCCGCATAGCGCAATTATCA 25913 30 100.0 38 .............................. TATGTTCACATGGGATACATCGGTATATCCGTGGGTTC 25845 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGAACTTGGAGATAC 25778 30 100.0 36 .............................. TTTCTTTTTCTTGCCATATCCTGGCAATTTCTATAC 25712 30 100.0 41 .............................. ACAAATAATTTTACTATGCGCCAAGTAATTGGATATATCGC 25641 30 100.0 36 .............................. ACCTCCCGGACAAAAACTTATCCGGCGACGGGCCGA 25575 30 100.0 38 .............................. TGGTGTCAGAACATCCCGGGAATTCGGTTTGAAGATTC 25507 30 100.0 37 .............................. TGGCGCCTTGGGCGCCTGTAACCATAATTTCGCAGGA 25440 30 100.0 36 .............................. TCCACCACTGTCCAGAGTAAAAAAAAGTAGAACAGA 25374 30 100.0 36 .............................. CGGCAATCTTCTGTCGCAGTTGGCTGTTACGCGGAA 25308 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 25240 30 100.0 36 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAA 25174 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 25106 30 100.0 38 .............................. GCATTGGACTGATTCTGCATATCGCTATCAACTCCTTT 25038 30 100.0 37 .............................. AATTGTGGGATAGCACCGGCCTGATCAACCGGTGCGA 24971 30 100.0 37 .............................. GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 24904 30 100.0 37 .............................. GCTTTTAGCTTACTTTCTAATACGTAGCCATAATTCC 24837 30 100.0 36 .............................. TTCCGCCGTTGCCTCGCTTCCGTCCGGAGCTGGCGG 24771 30 100.0 36 .............................. CCGCCCCCGGAATGGGCTTGGGTGTGTCATAAGTAA 24705 30 100.0 38 .............................. ATTCCAGCGATTCGGCCATCGATATGAGCGCCAGGTTG 24637 30 100.0 37 .............................. GGCTTTCCTGCCAAAGTTGTTCCTGCTTCTGCGAAGC 24570 30 100.0 37 .............................. CCACCTGCAGAGTTAGAACCATTTATACGCAGAAAGG 24503 30 100.0 37 .............................. TATTCTGACACATCAATTTGCTTGAGTTCAGTGATTT 24436 30 100.0 37 .............................. TCAACGAGAACGATGTCATCAACAATGTGCGGGCCAG 24369 30 100.0 36 .............................. GCAGTTTCTGATACGTTTCATTGCTGGTCCGAACCG 24303 30 100.0 37 .............................. TTTCAAACCTTACAACTTGTTGCATAACAAATTCTCC 24236 30 100.0 38 .............................. TCTATCGATGCGAGTTCTTCATGCCGTAGTTCCAATGA 24168 30 100.0 36 .............................. AAACAAATTGCAATTATAAAAAAATAGGGAATCACA 24102 30 100.0 35 .............................. TGCGATCAAGTACACTGTTAAGACTATCAGGCTTC 24037 30 100.0 36 .............................. AAATAAATTTGTCGCTGCCTGAGCCAATTTCAACAC 23971 30 100.0 38 .............................. AAGATTTCATTTTTGCAATACCTTATGAAACATTTGGT 23903 30 100.0 36 .............................. ATCTAACAGTCCAGCTGCCTTGAGGTCGCTTATTTT 23837 30 100.0 38 .............................. GGGACGTCAACACTCCGAAAGGCGGCTAGAAGTGGACG 23769 30 100.0 36 .............................. GCCATATATACACCCCCTACAAGTAGCTTGGAGCAA 23703 30 100.0 35 .............................. AGCTTGTCCGCAGGCTTTTCTTCCTTGGGCTCTTC 23638 30 100.0 36 .............................. CATTTCCATCAACCTTAATAAGCACGTCTTCAGGTA 23572 30 100.0 35 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGAGCCATT 23507 30 100.0 37 .............................. CCCAAAACATATTCATCCAAGTTATTCGTGCAGTTTA 23440 30 100.0 36 .............................. GCTGTAGTTACTTCTGTCCCGTTTTCTCTAATACTA 23374 30 100.0 38 .............................. CCGTTTTCATCCTTGAACCTATCAGATACTACAAACTC 23306 30 100.0 37 .............................. AATCCAATAGTAGTGCTAATAGTTCCCCATCCTCCGT 23239 30 100.0 39 .............................. ACATACAAAGGTATATCCCATCTTTTTCACTGTTTCAAA 23170 30 100.0 36 .............................. CAGACGACAGCTTTTTACCTATCCTTTATGAGCTGG 23104 30 100.0 43 .............................. TCGTACTGTAGACGGTGAAATACAAATCATTCCTGAGTTTTTA 23031 30 100.0 36 .............................. CGCAGTAGTCTGCTGTCAGTTCTATCCCTGCTGCGG 22965 30 100.0 37 .............................. ATTTATAAAGGAGAGATTATGTGGCAAAGATAACAGA 22898 30 100.0 41 .............................. TGACAAAGTAAAAGCAATAGCTGATGAGCGTAACTTAACTA 22827 30 100.0 37 .............................. GTGAGTACTTGTGAACAATCACGAGTTTCTCAGGTGT 22760 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 22693 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : ACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58967-60803 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGT01000049.1 Acetivibrio thermocellus YS ctg53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 58967 30 100.0 37 .............................. TCCTGGACGGTCTGGTCCAGGCTGGGGTGCTCCCGGG 59034 30 100.0 37 .............................. TACCACCCACCCTTGAGGAAGTAAGAGCCTACTGCCA 59101 30 100.0 35 .............................. TCCGGCTCGCCGCTCATGCAGTCAAGGGCAAGGAC 59166 30 100.0 40 .............................. ACGTAACAAAAAAATCGAAATCATTGCAAATTGCATACTC 59236 30 100.0 38 .............................. AGGAACTCCTGAAAGTACCCCTCAGAGGGTACAAACGC 59304 30 100.0 40 .............................. GCTCTAAAACCTTCATACCATCATCCTTTCTTGACACCTC 59374 30 100.0 38 .............................. TGATATTGTGCCATGAAATTTTGTTCAGGAAGTGCGTC 59442 30 100.0 36 .............................. AAATTAAATGTGAAGCATCCAATGTCAATCTTTGTT 59508 30 100.0 35 .............................. GTGCTTCAAGTTGTTCATCCCTGGTTTTAATATCC 59573 30 100.0 36 .............................. TTAATTCAGTGCATACACAGCTTACCCAATGCATTA 59639 30 100.0 31 .............................. ATCCAATCCAATCCAATCCGAATCCAATCCT 59700 30 100.0 35 .............................. ATGTGAATCCGGAGGCGGGGGTTATAGCTACCCTG 59765 30 100.0 36 .............................. TTGTGCGCTCGCTAGCACCTGTTTTTTCGTTCTTAT 59831 30 100.0 36 .............................. AAATGCAAGTCGATACTATAACAGCAATTGAACAGA 59897 30 100.0 39 .............................. TGCTGACTATATCAGAAAATGAACTTGAATCACAAGCAC 59966 30 100.0 38 .............................. AATTTGGAGGGACGAAACTGTCAGACCCATCAATATTA 60034 30 100.0 39 .............................. CACATTATATCTCAACTCCTAATTTCTCAATTTGTTCTT 60103 30 100.0 36 .............................. ATATGGCAAACAATTTGATAACATCCTTTTCAGTCA 60169 30 100.0 40 .............................. TATTTCCATCTACTTCAAGCATTGGTACAGATTTAAACCC 60239 30 100.0 38 .............................. TGTTCCTGCGTGGAAAGGGAACAAAACATCAGGCTCAC 60307 30 100.0 35 .............................. CTCCTATAGATTCTTCCTTTGGTTGGAGGCTTCTA 60372 30 100.0 38 .............................. ATAGTGAAAACTTTCATTGCTTTCATACAAATCCCTCC 60440 30 100.0 36 .............................. TTTTAATAATTTTTTCCCATCCTGCATGCACAAATT 60506 30 96.7 35 .....................G........ AGGTCTAACCAGAACAGTATAACAAGGCTTATCTC 60571 30 100.0 39 .............................. ATTCTATACCTATCGCATTTCTATTGTTTTTTATAGCAA 60640 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 60706 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 60774 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.2 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CCGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4259-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGT01000017.1 Acetivibrio thermocellus YS ctg24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 4258 30 100.0 36 .............................. TTCTTCAGGAAGTGAGTAAGGGTAATAAGGGGGATA 4192 30 100.0 37 .............................. TGCTCAGAATATGGCTAGGCATTTACACGTTTGATGG 4125 30 100.0 36 .............................. TGTTGGATGCCATACGGAGAGGCGCATTGGATTTTG 4059 30 100.0 37 .............................. ATAATGACATTTATGGTACTGTTGTGGTAATAGACGA 3992 30 100.0 38 .............................. TAGTGCATCTTTGGAAGACGAATGAAGAATTCAGAGAA 3924 30 100.0 37 .............................. AACCTCTGTTTTTCGTCGTCCCAGTATTCCTTCCTTG 3857 30 100.0 36 .............................. GGATAAACATTCAGAACTACTCTTTCAAAATACTCA 3791 30 100.0 36 .............................. TTAAACCCACTTTTTTGAATTTATGATTATGTATTA 3725 30 100.0 37 .............................. TCGCCTCTTTGGTATTTCGGGCGTAAACTGCAAAGAC 3658 30 100.0 37 .............................. ATATTTAGGCTATACTCACCGGCATTCAGTTCCATTA 3591 30 100.0 39 .............................. CTGGTATTCAATGTTCTTGCAAAATTGTTCCATTCAGAA 3522 30 100.0 38 .............................. CCGATGACTCTCTTTGGTTGCTTGACGATAGTCAGAAA 3454 30 100.0 37 .............................. TCATAGAGTATAAATCAGCCAAATCATTCCTAGCACC 3387 30 100.0 36 .............................. TACTAACGTGTACCGTATAACCGACTATAAAAATCC 3321 30 100.0 36 .............................. AAGGATAATAGTTGGGTTTTTGTACATAGTGTATGG 3255 30 100.0 36 .............................. TATACGTAGCTCCCAGAATCTGTTTGAACTCTGTAA 3189 30 100.0 36 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTC 3123 30 100.0 35 .............................. TAGAAATTGGGATAAGCAGCTTTTAGAATTGCCAT 3058 30 100.0 36 .............................. ATGTGGAGGTGGCGGTATGATATGTATAGGGCTAGA 2992 30 100.0 36 .............................. AAAGTTTAAACCCTGGACGTTGTATGTTTGCGCCTG 2926 30 100.0 39 .............................. AATACCCCAAAATGAAGGTTCAAGTCATTCGAACAACGA 2857 30 100.0 37 .............................. CCAATTTTGTCTTTGTCCTCGTCAACACCTTGACCAA 2790 30 100.0 36 .............................. TTAAATGATCCTCCGGTAACACTAGAAGCCGGAACA 2724 30 100.0 37 .............................. AGCTATACCATATCAATACAGATCTTGCACCGTGATA 2657 30 100.0 39 .............................. CACTTCCGGGATGGTAGTCAGTGCCATCGGGCTTGACAT 2588 30 100.0 36 .............................. TCGTTCAGCCTCCCTATGCTACATACCGGATGTAAT 2522 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 2456 30 100.0 38 .............................. TTGCAAGTCAGGTAATGCCTTTTGATACCGGTACCATG 2388 30 100.0 38 .............................. AAGACACTGAGACTCTTTCTATTAGTATTGATGGAAAC 2320 30 100.0 36 .............................. TGTAAATAAAGCTATGAAATTGAATGATTATATCAG 2254 30 100.0 36 .............................. AGCAACAGAGCTACGAGTTAGGAGAAATGCCCGTAG 2188 30 100.0 37 .............................. ATTGTATTGACTTGAACACTACCAACTGATAATGAAG 2121 30 100.0 36 .............................. GAGTATAAGGCTAAATGGTATGGCAGAACGTACCAC 2055 30 100.0 39 .............................. ACATTCAACACCAGCTTTCTGCCCTATGACCAACCTATC 1986 30 100.0 42 .............................. GCCAACGTTCTAAAAATTCACATACTCTTATTTTTTCTGCTC 1914 30 100.0 36 .............................. TCCTCAATCTGTTTTTCTGTAAACATCCACTAATAC 1848 30 100.0 37 .............................. ATCCAAGGATGTTGACCAATGATAGTTTCATGTGATA 1781 30 100.0 37 .............................. TCAATGACCAAGAGTGAAATTGCGAAAATACTTGCGG 1714 30 100.0 36 .............................. TGGCCCATACTACATACCACGGTGGCTAGAAAAGGA 1648 30 100.0 36 .............................. AGAATAGGCACAATCGGAAGTGAACAAGGAGAAATA 1582 30 100.0 36 .............................. TTGCAGATACTACATCGGCTGGTATATCTTCTGGTG 1516 30 100.0 38 .............................. TTAGTTTATAGGGAGATATTGAATCTCCCTATAATAAC 1448 30 100.0 37 .............................. ACAAGGCGGGAATGGGTGAACACTTTACAACTGTATG 1381 30 100.0 37 .............................. AGTTTCCGGCATCTCATCCCAAGTCCGTTCATCCAAA 1314 30 100.0 38 .............................. TAAGTTGGGCTTCTAATAGAAGTTCTGGTGCTGTTGGA 1246 30 100.0 38 .............................. CTTGATTTTGATTTTCAAGCGGATTATGCTTCAAAAAA 1178 30 100.0 36 .............................. TATTACCATAGCCAAGCGGCGGTAAATATCTCACAT 1112 30 96.7 38 .............................T TGTAATAGCATCGACAATAATGTTGTCTTGATTCAGTC 1044 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 49 30 99.9 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2424-516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGT01000016.1 Acetivibrio thermocellus YS ctg23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 2423 30 100.0 38 .............................. GATAAAAAATGTTGGTGGTCTTTGATGGCCACCAAGTG 2355 30 100.0 36 .............................. TAAATTACTGCAATATCTCTGATATACCTGAAGCTC 2289 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 2220 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 2154 30 96.7 36 .............................A TTCTTCCCCCTTCCTGCTCAGCACTTCAATAGCTTC 2088 30 96.7 37 .............................A GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 2021 30 96.7 37 .............................A TCCTATTCATAGGTACTGGGAAACCCAGCATGTTTGT 1954 30 96.7 37 .............................A TTGGTGTTTCCGAGGTCTGCAATTGCGCCAGCAACAG 1887 30 100.0 40 .............................. TTAAACAAGCTGCCATTGAAGCGGTTGCTGCTTCCAATCC 1817 30 100.0 36 .............................. AACTTGAAAACATTGGCATTGGAATCAGTGAAATAA 1751 30 100.0 40 .............................. TATTTTCAGCTTCTTGCTCTGTGTTATACTTACCAAGCCA 1681 30 96.7 36 ....................A......... GGTTCTAATACATGCATAATCGAAATGTTCGAAGGG 1615 30 100.0 36 .............................. ACTGCAAGATATGGCTTTCCGTCAACTTCATAATGA 1549 30 100.0 38 .............................. AAAGCAAAAGCGATTGCAGCTCTTGAAAAAGCAAAAGG 1481 30 100.0 37 .............................. CGATTGACAGCAGAGAAATAGCAGACATGTTGGAAAT 1414 30 100.0 37 .............................. TGCGCAAACCGTTTTCCACACAAAAAACCGTTCCGTG 1347 30 100.0 39 .............................. TCTTTGTTAATCTCTACTCTTCTCAAATCACCGTTCCAG 1278 30 100.0 37 .............................. CTATTTTTTCATTGGATTGATTCCACAGCCATTCTTC 1211 30 100.0 35 .............................. TTTGTGTTTTACTCTGGCTTGGTATTCACGGAGTA 1146 30 100.0 37 .............................. GGGTCGAAGGGCTCATAGTTGCCTTGGAAACCTATGC 1079 30 100.0 37 .............................. ACAGCAGGATTAAAGAAACATTTATTTTCGTGTTCTC 1012 30 100.0 37 .............................. TTTCATTCCATCAACATATAAAGATGAAAGCGGTAAA 945 30 100.0 36 .............................. TAGAGTATTCCAAACTGCAGAAGTGGGAGGATACAA 879 30 100.0 38 .............................. TTTCTCTCTTTTCTGGCAGGTAATCCACTTGGAATATG 811 30 100.0 36 .............................. GAGGATTTTTTGAAAATTGGGAGAGTCGCAGGAGAA 745 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 676 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [651] 545 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 28 30 98.1 40 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTCTGCCATGTTATCACCCT # Right flank : AGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATGTCAATACGCTTTTTGAATTTACGACAAATTGTACAATTTACTTCTTAAATTCTATTCTCTGTATCATTCCGTTATAAAAACTAAATGTAAAAGATTAAAAATCAAAATTAAATTTGATTATTATGCATCTTATGGTAATATACTTATGTAACTTTAAGTTGTTAATTGGAAAATAAACTATGTTCGTTACGTTACTAATTTGAAAGGTTTGGTTTGATTCCAAGCTGTGCAAAATGAGATGTTTTGCACATGGTTAAAGGATGTGAGGAAATGTAGGAACGATATGCAAAATTATACAGTATTCTGACATTATCAAAAAATTAAAAAAGATTGCAAAAAATAGTTTACCTAAAATTGATTATGCTGAAAAGAGGGAGGATTAAAATGAAAAAAAATATTTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 124672-124858 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGT01000012.1 Acetivibrio thermocellus YS ctg1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 124672 37 100.0 38 ..................................... CCAAAATCAGGCCGTGCATGGGTGAACCAGGAAGCAAA 124747 37 97.3 38 ...............T..................... ATACATAACAGAATTCGCCTCCCAATTTATCATTATAG 124822 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 98.2 38 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCAAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCATTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCCCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACCA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //