Array 1 169151-171070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001376.1 Jonquetella anthropi DSM 22815 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169151 29 100.0 32 ............................. GATGACGATTATCTCAAGATTCTTCGGAATCG 169212 29 100.0 32 ............................. GGTACAGCGAAGTTAGAGAAGTCAGTTTCTCT 169273 29 100.0 32 ............................. CAACATGGTTCTGTAAGAATCGAGGGAAACAA 169334 29 100.0 32 ............................. AGATACTTCAAAGGGTATGCGTTTTTCTCTGC 169395 29 100.0 32 ............................. AAAAATCCCCTGTCCAAAAAGGACAGGGGATT 169456 29 96.6 32 ............................T CAAAAATAGGACTTATCATTCAAGCGTGATGT 169517 29 100.0 32 ............................. ATAAGGACGTACTCAAAGCAATTAGGACGCTC 169578 29 100.0 32 ............................. CAAGGAGAACCGCCGGAGCCAACGCGCAGCAC 169639 29 100.0 32 ............................. GCCCCCTTCAATAATGCCGTCGATGGAGCCGG 169700 29 100.0 32 ............................. AACTGTAGTCACGGAAGAGCCGTCTTCGTCAA 169761 29 96.6 32 ............................T ACACAAGGCATGGACTGGGGCCGTAGCGATGA 169822 29 100.0 32 ............................. CAAGGAGAAGTCAGTCGACAAGGAGAGCCAAC 169883 29 96.6 32 ............................T TCAAAGATTCTTGGATCTTGGAACATGGAACA 169944 29 100.0 32 ............................. GAAGTTACCGTCGAACGACGGTATACTGAGTT 170005 29 96.6 32 ............................T TCCCTGATAATCATCAGGGCGCACATATAGAC 170066 29 100.0 32 ............................. CACTCTAAGGCACTATAAAAGTCCATAATGCC 170127 29 100.0 32 ............................. GATTTGACGAAACTAAAAAGCGGCGCCGAAGA 170188 29 100.0 32 ............................. TCTGCGCGATTGACGGTGACGGGCTGGCCGAG 170249 29 100.0 32 ............................. AGCCAGGTTACACCGTTAGCTATGCTAACGGT 170310 29 100.0 32 ............................. TTGACGCCCTCTCCGCGTACTGGAACGCCATC 170371 29 100.0 32 ............................. AAAACCGATCAACTGCTCCACAGGCTTCAAAC 170432 29 100.0 32 ............................. AAAAATCCCCTGTCCAAAAAGGACAGGGGATT 170493 29 96.6 32 ............................T CAAAAATAGGACTTATCATTCAAGCGTGATGT 170554 29 100.0 32 ............................. AGCCAGGTTACACCGTTAGCTATGCTAACGGT 170615 29 100.0 32 ............................. TTGACGCCCTCTCCGCGTACTGGAACGCCATC 170676 29 100.0 32 ............................. GAGCTACAGCGTCATGTCATCTATCCTGTTGA 170737 29 96.6 32 .......T..................... TTTCGCGTGGCCTGCGGCGCATAAAAGCCTAG 170798 29 100.0 32 ............................. CAGTGTTTGACGCTATCGGCGCAGTTGGCCGA 170859 29 100.0 32 ............................. AAGACCGCAATCGACAAGAACAAGACGGACAT 170920 29 96.6 32 ............................T TGATACCTTCTGTCTCTGACAACTTGATAGAC 170981 29 100.0 32 ............................. GCCACGGCTGCGGCTAGGCGGGCCGGGTTCAG 171042 29 82.8 0 ...GT......T..............TT. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 CTGAGCTCCACGCAAGTGGAGATGTCCCC # Left flank : GGCAAGCTACCTCGAAGAGCCAGGGATGGACTTGGAGCGGCACGTTCGAAAACTCATCGGACAGGAGCTGTACCGTCAGAAAGTCATTTCAAAAATGATTGACCAAATCAAAGAATTGATCCTGCACGGTCAATCTGACGAAGCACTGGAAGAAAAATCTCCATGCTGGTACTGATAACAAATCAGGTCCCAATGAGAGTTCGAGGCTTTCTTGCTGCCTGTTTATTAGAAGTCGCTCCGGGGGTGTACGTGCACCCGAGAATCAACGCTGGCGTCAGAGAGCGCATTTGGAAAATCATGACCGAATGGAGCGTAGAATTTTCGCAGGAAGCTTCTGTGCTCGCCCTTTGGCCGGCTCCGAAAAGCAGCGGCGGCATCAACATTCGGACGATCGGTATTCCTCAGAGGACGCTGATCGATTATGATGGACTCGTGTTAAGCAAACTAACGTCAGCAGACACAAAGGCATTAGAAAGCTAGGGGATAGTACAAATGGAAGA # Right flank : CGCCTCAGCAGCGACCAGACGGGCAGGGTACAGCTGCCCTCCGGCGCGCGGAGGCGATCCTTGGCTCGGCTCCGCTTACGGCTTGTTCGACCAGTCATTCGTTCAGGGGCTGGAACGCGCCCCGGGCGGTTCTTACTTCCCGAGCCCTGATGGGCGCCGCCGCTCGGGGCTTTGTCTCGTCAGCGAAAAACGACTTCTGGACGCTCTCCGGACAGGCACTCATTAACAGCGCGACGTGGGCGCCCCGCCTTGGCTCGGCCGAGTACTTCTGGAAGAACTCGGCCGGCTCGCTCTACCAGTCGATGAGCGACCTCAAGGGACCGGACGGAAAGTACCTCGACCCCAAAGTGGCTCGGACCATGGCGACGGGCTTCGGCTCAATCGTCGCGGCCATCGAATACATGTCCCTTTACCGTATGGCCGGGTTGGTGATCCCGAGCGCCCTCAAGAACGCGCCGGGCATATCCCGCTTCCTATCGCTGCCCGAACAGCTGCGGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCTCCACGCAAGTGGAGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 1454494-1453003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001376.1 Jonquetella anthropi DSM 22815 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1454493 32 100.0 35 ................................ GGCGATTGTCCAGTTGGGGTATTCTCCGACAAGAC 1454426 32 100.0 34 ................................ TCACAGCTTGGCGCAAACCAGGCATGCCAGCGCT 1454360 32 100.0 34 ................................ AGGGTCTCGCTGGTCTCGTGCGTGCGCGAGCTTG 1454294 32 100.0 36 ................................ GCGATAGGCGGCCCTTAACTCAACAGCCCTAGGCTT 1454226 32 100.0 34 ................................ AAGCATGTGGCGCAAAAACCAACGAGCTTCAGCA 1454160 32 100.0 36 ................................ ATTTTATTGAATACGCCATAAAAGGCTTCAGGGAAG 1454092 32 100.0 35 ................................ CATTAACGGGGCAAACGTAGGGCTGGGCGTCTACA 1454025 32 100.0 34 ................................ CCACCGCAAGCTAACAACTCCGCTCCCCGCGGAG 1453959 32 100.0 32 ................................ TATGACGAAAGTCTGTCTTTGCAGTCGGATTT 1453895 32 100.0 37 ................................ AAATTTTTTGCAAAAAACGTATCGATTTTGCGCAGAC 1453826 32 100.0 35 ................................ GCTGTGGGGCGGTTATTTTTCCTCCTCTGTCTTCG 1453759 32 100.0 33 ................................ ACCAACGACCAACGACCTCTTGGGGGGTCGTAG 1453694 32 100.0 34 ................................ CATCATGGCTTTGTGTTCCTATGGCTTGAAGTGT 1453628 32 100.0 34 ................................ CCCTCGTACATCACCATCACGTGATAATGGGCCT 1453562 32 100.0 34 ................................ ACCCACGTGCCTTTGACCGTGAAAACCCAGTATT 1453496 32 100.0 33 ................................ CATTCGCCTGCAAAAGCTTAGGCAAAGTCTTGC 1453431 32 100.0 34 ................................ ATCTGTAGGCTCGGCGTAGCCCTCATCTTTTCTT 1453365 32 100.0 34 ................................ CGTCTCGGCGCCCGCGTCGTAGGGCAGCGCCGTT 1453299 32 100.0 34 ................................ CTTGCTTGATGTCCGATAGCGGCTTGAGCATGGC 1453233 32 100.0 34 ................................ CTCGCCAGCGTCAAAGCAGAAACTGCCCGGCGCC 1453167 32 100.0 34 ................................ ATCGACCAGCAACAAGTTATCCGGGTACTCAACC 1453101 32 100.0 35 ................................ ACAGTACATTAAGACTCATATCATTAGGCCGTCAT 1453034 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : ACCTATGACGTCAACGTGTGCGGAGAAGGAGGAACGCGTCGGCTGAACCACGTTGCAAAACTTTGCGAAAGCTGGGGCCAGCGCGTGCAATTCTCGGTCTTTGAATGCCTGCTCGAACCAGCTCAGTGGGTTCAGCTCAGAAGGGATCTGCTCAATGAAATTGACATGGAACACGACAGCCTAAGGTTTTACATGCTGGGAGCCAACTGGCAGAGACGGGTAGAAGTTATCGGGGCAAAAAAGAGCTACAACCCGCAGGGGAACCTGATTTTATAGCGCGAACCCTAAGCGGTCAGATCGCCGCGGGAGAATAAAATGCCCGCAGGACTGGCGGTTCTAGGGAGAGTGAAGGGATAAAGAGAAAACAGGGCCGCGCTGTCCTGTCTGCCTGCAAACACAAGCAAAAGACCTCCCCGCAGAATGCCAAAAAGGGCAAAAGAAAAGACGGTCGCGGAAAAGAGGCCGGGAAGTAAGCAACGAAGAGGAACGAAGAAATGCCT # Right flank : CTAGGCGGACGTATTTACGCTATGGTGGCCCTAGGACGTGTCTGAATTGAAACGATTCATCAAAATTTACGTTGTGCTGTCACTGGCATACAAAGAGAAGAGCCCGGGAAGCATTTGCTTCCCGGGCCCTTCGTTTTTCTTTGATTAGCTACTTGATGACGAGTTTGTCCGCTTTGCCCAGATACCCGATGCCGGGGTTGGCAGGGGATTCGACGGACAGAGGCGGAATGATGAACGTTCCGCGGAAGACTGCCCGGCAGGGGAAGTTCCATCCAAATTCGCCTGTTGCGTTGACGGCGTTCAGGATGACCCGATCAAGCCGTTTGTCAATTCGCAGCGATCCAACGTTCCCCGTTGTTCCTTCGCCCGCCTCGGTCAGTTCAAGTCCGGCGGGAAGGAGCACGCTGGTCCTCAGGTTCGCGCTGTTGCTGTTCGCTTTGACGGTCACGCGGAGAATGACTTCCTGTCCGAGTTTGACGTCTTGGGCGTTGATCTTCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //