Array 1 455188-456592 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAUC01000006.1 Pseudomonas aeruginosa strain NCTC13717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 455188 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 455248 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 455308 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 455368 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 455428 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 455488 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 455548 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 455608 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 455668 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 455729 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 455789 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 455849 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 455909 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 455969 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 456029 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 456089 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 456145 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 456205 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 456265 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 456325 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 456385 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 456445 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 456505 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 456565 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 466767-465118 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAUC01000006.1 Pseudomonas aeruginosa strain NCTC13717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 466766 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 466706 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 466646 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 466586 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 466526 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 466466 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 466406 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 466346 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 466286 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 466226 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 466166 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 466106 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 466046 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 465986 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 465926 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 465866 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 465806 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 465746 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 465685 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 465625 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 465565 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 465505 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 465445 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 465385 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 465325 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 465265 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 465205 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 465145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 354483-353555 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAUC01000026.1 Pseudomonas aeruginosa strain NCTC13717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 354482 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 354422 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 354362 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 354302 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 354242 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 354182 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 354122 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 354062 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 354002 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 353942 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 353882 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 353822 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 353762 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 353702 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 353642 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 353582 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //