Array 1 106425-105541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVFG010000001.1 Escherichia coli strain S2.40 / O75:H31 / fimH840 / 5597 (ST Warwick) isolate Faeces/Commensal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106424 29 100.0 32 ............................. AATGGTCCGCCGGGTTTATCGCTCGCGTTGAT 106363 29 100.0 32 ............................. TTGCAGGAAGGCGCGGTTAACCAGAAATGGTG 106302 29 100.0 32 ............................. ATATTAAATCCGAAACAGCATTAAATAACAGG 106241 29 100.0 32 ............................. CGGGATTTGGATTTAGTAACGAGACTGTTATG 106180 29 100.0 32 ............................. GTTTTAACTGTTTGGGTTACTGGCATCTTTGT 106119 29 100.0 32 ............................. CCGCACCAGTGCCGAAATGCAATGCTGATTTG 106058 29 100.0 32 ............................. TTCGGCAAGAACAGAAACGTCCGGTGCAGCAA 105997 29 100.0 32 ............................. TACCCAAAAACGGGAGTATTTAGAGGAAGCGA 105936 29 96.6 32 ...........C................. AAAACAAATGAGATTTTATCCGTGCTTGTTCC 105875 29 100.0 32 ............................. CGGAAATTTGTGTCAGATATTGCCGGGAACAT 105814 29 100.0 33 ............................. ATATGGCCGGTTGGCGCAATATTGATACTTTGC 105752 29 100.0 32 ............................. ACGAATTCATTTCTGCCCGCAAAAAAGAGGAC 105691 29 96.6 32 ............G................ CTATTGCCGATCGCTTTGTATCGCGCCCCGTC 105630 29 100.0 32 ............................. GCCCAGGGATTTGTTCAATCCAGCGTGCCGCT 105569 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATTTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132945-132123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVFG010000001.1 Escherichia coli strain S2.40 / O75:H31 / fimH840 / 5597 (ST Warwick) isolate Faeces/Commensal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132944 29 100.0 32 ............................. AGTAATACATTTCTCCTGTTTTTCATACTGCT 132883 29 100.0 32 ............................. CCAGCAGTGGTACGTTAACAATCAATCGATAC 132822 29 100.0 32 ............................. GCGGCGGTTAACGACGTCTGCGGGCGATGCCG 132761 29 100.0 32 ............................. GCGCGCTCCAGTCCACGCGCTCAGACGTTGCG 132700 29 100.0 32 ............................. TTGTCGGTACAGCTCCAGCATTAATCCCCACC 132639 29 100.0 32 ............................. AACGCGAAACGGGTCGAGGCCATACCATAATT 132578 29 100.0 32 ............................. TTGCTAAACGCATTGCACCTCTTCGTGAAAGA 132517 29 100.0 32 ............................. CTATTTGGGCTGACAGATAACGTCTGCGCAGT 132456 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 132395 29 100.0 32 ............................. TTTGAGATACGAGCAAAGGCGGGTGATATAGC 132334 29 100.0 32 ............................. TCGCTACGACCACACTGGATCAGGAACAACTT 132273 29 96.6 32 ............................C AGATTAAAATCAATCATTTTTCCACTCCCTGC 132212 29 96.6 32 ............G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 132151 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //