Array 1 34313-36966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEFT010000030.1 Halomonas kenyensis strain DSM 17331 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34313 29 100.0 32 ............................. TCCTCGATCTCGTCCTCGAGGCGCGCGATGCG 34374 29 100.0 32 ............................. GTGCCGCGGCGGCCAGAGGGGATCTCAATTAC 34435 29 100.0 32 ............................. GAGCTGGAGTCATGATCACCATCTCATCACTA 34496 29 100.0 32 ............................. GCATGCTGAGGCTGGCGACCGAGGAAGAGCAC 34557 29 100.0 32 ............................. CCCGAGGCGATGGTGACGTCCTCCAGGGTGTA 34618 29 100.0 32 ............................. CTGAGTGAGTACTGCAGCATGGCCTTGGCCGC 34679 29 100.0 32 ............................. CCCGAGGGGCACTCAGGGATTACGTGTTGCAC 34740 29 100.0 32 ............................. CGTTCGAGCATTTACTGCTGGGAGACGGCCAA 34801 29 100.0 32 ............................. TGGTGCCCATCGTGATCGTCGTCGGTATCCCA 34862 29 100.0 32 ............................. CATTACAGCGTCGAGCTGGAATCCGCCGCGCT 34923 29 100.0 32 ............................. CTATGGGGTCGCGCCCGCGCCAAGCTCGCCCG 34984 29 96.6 32 ............................A TGGGCGTGGGTCGCGGCCTCATGTCAGTGGGC 35045 29 100.0 32 ............................. TATCCGCGGCTGCGGTCAAGCAGCATGGTGCC 35106 29 96.6 32 ............................A GCTGAGCCGCCCGGAGCCCGAGGCCCCCGACC 35167 29 100.0 32 ............................. GGAGAGGTCACATGATCTACAGCCAGGAAGCC 35228 29 100.0 32 ............................. CCGCGCATCTCCTCGAATACGCGGGTGCGGAT 35289 29 100.0 32 ............................. CTGAATGCGGGCGACCGGCAAGGCGCGGCTGA 35350 29 100.0 32 ............................. GACGGCTACCGCGTCAGCTCCTCCAACCTATC 35411 29 100.0 32 ............................. ATAGTCGTAGTAGCGATCACAGCTCGGGCCAT 35472 29 100.0 32 ............................. CCCTTGCCCGCTGCCGCTCCGAAATAACTGGC 35533 29 100.0 32 ............................. CAGGCTCAGCAGTCGATGATGCTTGAGGCCAT 35594 29 100.0 32 ............................. TAAGCGCGGCGAACTTCCGTTGCTGTGGGCGC 35655 29 100.0 32 ............................. GTCACTGCCGACGTGAAGGCTATCGCTCAGCA 35716 29 100.0 32 ............................. AACCCGGTCGGCCAGGTGTCCCGCGTCAAGCG 35777 29 100.0 32 ............................. GCAATTGATCGACTCGCCCGGATTCGAGTAGA 35838 29 100.0 32 ............................. TCGCCCCGAATTTCCAGGCCCATGGCGCCGGC 35899 29 100.0 32 ............................. AAACATCTGGGCGGAGAGTCGTTGATATTTCA 35960 29 100.0 32 ............................. CAGGGCGGCATCTTCAGGGGGCACCGCATATG 36021 29 100.0 32 ............................. GTCAGGGCGTCAGCGAGGAAGAAGGCGTGTTC 36082 29 100.0 32 ............................. CAGCCAGGACTCCACCTTGCGCAGCGCGGCCC 36143 29 100.0 32 ............................. CCAATGAGGTGCAACGTGAAGCCGAAGAGCGC 36204 29 100.0 33 ............................. CGTCTCGAGCACCACGTCGCCAACCGAGATCCC 36266 29 100.0 32 ............................. TCCGCCAGGCGGCGCACCGAATGCTTGGGAAA 36327 29 100.0 32 ............................. TCGTCGGCATCGCGGTCGGCCTGGGCGCGTTG 36388 29 100.0 32 ............................. CGCTCGATGTGGTTCTGGCCGATCTGCCCCAG 36449 29 100.0 32 ............................. ATGCGTGGCGACTGGATCCCTGGCGTGATCGA 36510 29 100.0 32 ............................. CGCATACAGGGCTTCCCCCGCCTGCTCCTGGG 36571 29 100.0 32 ............................. CCTGAAGTGCGTGCGGGCATACTGCTCGTTGC 36632 29 100.0 32 ............................. CTTTCGGCTGCAAGCTGCACGAGCTTGTGCAG 36693 29 100.0 33 ............................. TGATGCGGCGGCTTGCGCCCGAGATCAAACGCG 36755 29 100.0 32 ............................. CCGGGTACGTACCTCGCTCGCGTGTTTGACCG 36816 29 100.0 32 ............................. TGGTCGGTGGTGTTATTATGGGCGAGCGTTGC 36877 29 100.0 32 ............................. CAGATCGGGCAGGATAGTTTCGAGGTCCACTT 36938 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 CCGATCCCCGCGAGGGCGGGGATAAACCG # Left flank : GGGAGATCGAACCACCACCGCCAGCCCCCGAAGCCGTGCCACCAGCCATACCGGAGCCGGCATCCGTGGGCGATGCCGGGCACAGGAGCGGCTGATATGGCCATGCTAGTCGTAGTGACCGAAGCCGTACCGCCCCGTCTGCGCGGCAGGCTCGCCGTGTGGCTGCTCGAGGTTCGTGCCGGTGTCTATGTCGGCGATGTCAGCAGGCGTATCCGCGAGATGATCTGGGAGCAGATCAATGCGCTGGCGGAGGAAGGCAATGTCGTGATGGCCTGGGCCAGCAATCACGAGTCCGGTTTTGAGTTCCAAACGTACGGCTCGAATCGTCGTGAGCCCTGGGATCATGACGGACTGCGTTTGGTGCGCTTTCTTCCGCTAGAAACCAACTAACTGATTTTCCAGGCTCTTTAACAATTCGTGCTGTACAAAAAATAGGCAAAATCGCTGGTGGGAAATCCACCGGCGATTTTCCTTTTGTAGATCAATCGTCTACGATTAGT # Right flank : TGGTCGGTGGTGTTATTATGGGCGAGCGTTGCCCGATCCCCGCGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCGAGGGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-3120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEFT010000031.1 Halomonas kenyensis strain DSM 17331 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. CGCTGGTCCTGAATGCGGCGCGGGTCGGTGAC 107 29 100.0 32 ............................. CCGTTCCGCTTGCTGTGGAACGGCGACAACAG 168 29 100.0 32 ............................. GTTCCGAGCCCTGTGGGAAGGCATCAGGGAGC 229 29 100.0 32 ............................. TTCTTCTGTAGAACTTGAAAGCGCACCCTGCG 290 29 100.0 32 ............................. TTGTAGGTAGGGTAGTGGTGGTGATTCCCTGA 351 29 100.0 32 ............................. CCCGCACGCAGCGGGCAAAGCCGTGAAGGGAG 412 29 100.0 32 ............................. TTCTCGCTTTGCAGGGTGTTCCACTCGCGCCA 473 29 100.0 32 ............................. TACTCGACCATCACCTCCTCGAAAGTGCGTGG 534 29 100.0 32 ............................. GCTGCACAGCAAGAGCGACATTGCCGCCGAGC 595 29 100.0 32 ............................. GCTGTTGTCGAATACGTCGCCCTGTATCCACT 656 29 100.0 32 ............................. AATGCCAGGTCGCTCTACCGATGCACAGCACA 717 29 100.0 32 ............................. GTGCGGCCACCTTCTCGCCCACTCAGGGCGAG 778 29 100.0 32 ............................. CAACTTCATCCCGAATCGGTTGAATTCAAGAG 839 29 100.0 32 ............................. CACACCGTCCGCGCCGGCAAGGGCGTGGCTGA 900 29 100.0 32 ............................. GCGCCGGCAATACCCAGGCCGAGGAAGGCCGG 961 29 100.0 32 ............................. CCGGTGTTGTAGACGCCCATCAGGGTGGCCGG 1022 29 100.0 32 ............................. TCGATGGAGTTCGCGGCAAGCATCACCGTGGC 1083 29 100.0 32 ............................. CGGATGAGCGTTCATCGCCATGTCATATCTCC 1144 29 100.0 32 ............................. ACAACCTGGACTGGTCGATTGTGGTGAGCACC 1205 29 100.0 32 ............................. ACGCCATCGCCGGCGGTTGTGATCTCTTCGAC 1266 29 100.0 32 ............................. GCCCGGTAGCTGCGCTGGGTATCCATGTCCTC 1327 29 100.0 32 ............................. CACTGGGGGCCGCGCTGGCACGCCATGCACGG 1388 29 100.0 32 ............................. TCGCTTCTGGATGACAAGGGGAACCGCTGTGA 1449 29 100.0 32 ............................. TCGACCTAGAGATTCCCGCTGATACGGGCTCG 1510 29 100.0 32 ............................. AGTGGCGCCTGCTTAGAGTGTTTAGGTATGAG 1571 29 96.6 32 ............................A GAGCCGACCGAACTCTTGAAGAAAGCATTGCG 1632 29 100.0 32 ............................. TCACCTTCATCGATTGGCTCCCAGCCGATCAG 1693 29 96.6 32 .......................T..... TGGGAGCTGTACGAGATCGCGAAATATTGCGA 1754 29 86.2 32 .............A.......G.T.G... CCGTCGCGTAGTAGGGTGCTTATTGGGCTAGG 1815 29 89.7 32 ..............T......G.T..... TAGATGGTCCACTTGCCGCTGATGCTCATGTC 1876 29 93.1 32 ..............A........T..... CCGGAGTGACACACCATGAGCCGACATTGGCT 1937 29 96.6 32 .......................T..... GCCAGCGACTGGGATCGCCTCGAGGTGACCCT 1998 29 82.8 32 .T...T.......A...A.....T..... GGCCTGAAGAGTCCAGCCGAGCTGTTCCCAGC 2059 29 86.2 32 ...........A.A.........T....T CTGACGCCGATGTCATTGGCCTCCAGGTCGAA 2120 29 93.1 32 .T......T.................... TTTTCCCACCAGAAGACGCGACCAATGATGGT 2181 29 93.1 32 .....................C.T..... CGGCCCGTCCGCCTATAGTCCTCTAGCGAGAA 2242 29 93.1 32 .................A.....T..... TTGCGGCAGGTTTTCAGACTGGTCTGGTATCG 2303 29 82.8 32 .T..........G.A......G.T..... CTGCGCGAGTGGGAGCGCTTCCACAACCGCAT 2364 28 86.2 32 ............G.A......-.T..... GTATTGTCGCCCGTGCCCATGCATCGCGCAGG 2424 29 93.1 32 .............A.........T..... AAGATTTCCACCACCGCAAAGGAGATCGCCTA 2485 29 100.0 32 ............................. ATCACCGGCAGCTTTACCTGCATGGCGCTGGA 2546 29 86.2 32 ......T.......A......G.T..... CATCCATCGCCTGACCCTGGCCTCTATCTCTA 2607 29 89.7 32 ............G.A........T..... CTGCACCGGCAGGCCGAGGAAATCGCCAAGGC 2668 29 86.2 31 ............G.A......G.T..... AACGGCGCCAGTGCCCTTCCCCATCGGTGGA 2728 27 86.2 32 ........T......--......T..... GATGCTGACCTGGTGCGCCATGGCGATGGCGT 2787 29 93.1 32 ...............CT............ TCTCAGCAGTGAGACAAATAGCCAGTATTACT 2848 29 82.8 32 T......T....G.A........T..... ATCGGTGGCGCCTGGTTTATCGATCTGGACGC 2909 28 89.7 32 ...........-.........G.T..... GGGTGGGCCAGCAGACGCTCCAAAGCGATCAG A [2924] 2970 29 89.7 32 .T.C...................T..... AAATGTGGAGAGAAGGCGCAACGACTATCGAA 3031 29 89.7 32 ..............T......G.T..... AACCCCATGGAGCCGCCGGGCTTTGCCGTATT 3092 29 89.7 0 .......T......A........T..... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 95.1 32 CCGATCCCCGCGAGGGCGGGGATAAACCG # Left flank : CGGGGATAAACCGCGTTCAGCACTCCCGGTATTACTCCCCCTCCTC # Right flank : GTCATAGTCGCGCTGGCGCTGGAACACCATGGGCCGATCCCCGTAGGAGCTGCAACGAATAAACCACCAGGGTGCAGCCCAATGGTAGAGCTGCACCCACAAGCTCGTTGTTACCCCCCAAACTCCTCCGTATCGATCTCCTTCTGCAGCGCTGCGCTGTAGCGGGCGCCGGCGACCTGGTCCGGTGTCAGCAGGGCGGTGAGACGTTCCAGGGTGTTGGGTTCCAGGTGCAGGTTTTCCGCTGCCAGGTTTTCGCGCATGTGTGCGACCGAGCGGCTGCCGGGAATGGGGATGACGTCGTCGCCCTGGGCGGTGAGCCAGGCGAGGGCAAGCTGGCCGGGGGTGACCTCCTGCTCGCTGGCGATGGTCTTGAGTTTTTCCAGCTGGCGCAGGTTATGCGGCAGGTTGTCGGCACTGAAGCGCGGCATGCCGTGGCGCACGTCATTTTCGGCGAGCTGGCTGGTGTCGGTCACGCCGCCGGCGAGGAAGCCTCGCCCGAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCGAGGGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-55] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //