Array 1 361996-363061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZOA010000001.1 Escherichia coli strain GHA-BE-NMIMRSEQ-2021-5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 361996 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 362057 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 362118 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 362179 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 362240 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 362301 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 362362 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 362423 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 362484 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 362545 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 362606 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 362667 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 362728 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 362789 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 362850 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 362911 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 362972 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 363033 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 388761-389825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZOA010000001.1 Escherichia coli strain GHA-BE-NMIMRSEQ-2021-5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 388761 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 388822 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 388883 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 388944 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 389005 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 389066 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 389127 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 389188 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 389249 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 389310 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 389371 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 389432 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 389493 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 389553 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 389614 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 389675 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 389736 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 389797 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //