Array 1 31674-30916 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITL01000029.1 Gluconacetobacter diazotrophicus strain PR 4 Ga0314203_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 31673 32 100.0 33 ................................ TTAGTTTCATGAGTTTGGTGAGTTATACGAACT 31608 32 100.0 35 ................................ CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT 31541 32 100.0 34 ................................ AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT 31475 32 100.0 34 ................................ CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG 31409 32 100.0 34 ................................ TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT 31343 32 100.0 33 ................................ ATCGCGCATGGACCGCACCACGGGATTCCGGTC 31278 32 100.0 34 ................................ TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG 31212 32 100.0 34 ................................ GGAATGTGAGGGATCGCGATGCGGAATGATTGGT 31146 32 100.0 35 ................................ CGTCACTGTGACGGGCGCTGACACGTTCACGTATC 31079 32 100.0 34 ................................ ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA 31013 32 96.9 34 .........C...................... GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC 30947 32 81.2 0 .........CAC....A....G.....A.... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.2 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : ACCATCGCCTCTTTGGCCCCATCGGCTATATCCCACCCGCCGAGGCCGAAGCCAACTACTATGCAGCCCTCGAGATCATCGATATGGCTGCGTGACTCAAACCAAATGGCCTCCGGGAAACCCGGGACGCTTCACACGATAA # Right flank : ACGGCAAGAATGCGCCTCGCATGCAGGGGCATAGATCGAAGCTATACAAGGACTCGGGTTCACTTCAGCGACCATCCCGAGAGAAGCTGCTGTCGGTCTACCCATCCAGCGACTGCAATTCGAACAGGCGGCGATACAGGCCCCCGTCCTGGGTGATCAACTGGGCGTGCGATCCGTCTTCGCGCAGTTCGCCGCGGGCGAAGACCAGGATGCGGTCCAGGCCGACCACGGTGGACAGGCGGTGGGCGATGACCAGTACCGTGCGGCCGACCATCAGGCGTTCCATCGCATCCTGCACCAGGATTTCCGATTCCGAGTCCAGGCTGGACGTGGCCTCGTCGAAGATCAGGATCGGGGCGTTGGCCAGGAAGGCGCGGGCGATGGCCACACGCTGGCGTTCGCCGCCCGACAGCTTGACGCCGCGTTCGCCCACCATGGTGGCGTAACCCTTGGGCAGGCGTTCGATGAAGCCCGCCGCGTTGGCCTGGCGGGCCGCTTCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2670-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITL01000046.1 Gluconacetobacter diazotrophicus strain PR 4 Ga0314203_146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2669 32 100.0 35 ................................ CGAGCGGGACGTTTTCGATGCGCCCGGCCTCGAAC 2602 32 100.0 34 ................................ ATCGTCGTGTCCACGGTCGCGAACACGAATTTCA 2536 32 100.0 34 ................................ CGCAGGGCGTCTGGGACAAAGCAGGTCCGCCGGT 2470 32 100.0 35 ................................ ACGACCCAGTGCCGACCCTGTCCGCCGGCGGCAAC 2403 32 100.0 34 ................................ AGGAGGGTGATATCGAACGAATATCCGATCGGAA 2337 32 100.0 35 ................................ ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC 2270 32 100.0 34 ................................ CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC 2204 32 100.0 36 ................................ TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC 2136 32 100.0 33 ................................ ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC 2071 32 100.0 34 ................................ TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA 2005 32 100.0 34 ................................ TGGGTGACGTAGATATACGACCCGTCGCTAACCT 1939 32 100.0 34 ................................ GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC 1873 32 100.0 34 ................................ ACGGCGATCTCACCAGCCCGCGCGGGGCTGATGC 1807 32 100.0 33 ................................ AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG 1742 32 100.0 35 ................................ GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA 1675 32 100.0 34 ................................ CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT 1609 32 100.0 34 ................................ TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG 1543 32 100.0 33 ................................ GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT 1478 32 100.0 34 ................................ TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA 1412 32 100.0 34 ................................ GCGATCACGTTGCGGATCGACCGTTCGGAACGAC 1346 32 100.0 35 ................................ CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG 1279 32 100.0 34 ................................ CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA 1213 32 100.0 34 ................................ GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC 1147 32 100.0 34 ................................ CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA 1081 32 100.0 34 ................................ CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG 1015 32 100.0 34 ................................ CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG 949 32 100.0 35 ................................ CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG 882 32 100.0 34 ................................ ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC 816 32 100.0 35 ................................ CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT 749 32 100.0 34 ................................ AGGGCGAGGAAGATGTTAACTGATCCTCGTGAAG 683 32 100.0 35 ................................ ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG 616 32 100.0 33 ................................ AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG 551 32 100.0 33 ................................ TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC 486 32 100.0 34 ................................ CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG 420 32 100.0 35 ................................ AGGAACAATCACTGCCCGCAATCCAGACAATTCCG 353 32 100.0 33 ................................ GTCGATACCCAGCCACTGCGGCATCTCGAAATT 288 32 100.0 35 ................................ CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT 221 32 100.0 34 ................................ GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT 155 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 100.0 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : TACCCAGCATTCGTGTGGAAATAGGCGATGCTGGTGCTGATTACCTATGATGTAAACACCGAGGATGCGGCAGGCCGTAGACGGCTACGGCGCGTAGCACGCGCCTGCCTCGATTTCGGCCAGCGCGTGCAATATTCGGTGTTTGAATGCGAGGTGGACCCCGCACGCTGGACGGCCCTGCGGGCGCGCCTGATCGCAGAGACCGACACCACAAAGGACAGCCTGCGCTTCTATCAGCTTGGAGCGAAAGGAAAGCAGCGGGTGGAACATATCGGTGCAAAGCCCGTCCTGGACCTGGATGGACCGCTTCTGTTCTGATCCTGCGCGATACGAAAGCTGTTGGGCAAACCCCTGCCGATTCGCGCATCTACCATGTGGTTTCCTATCAATGTGTTATGCCCCAACGCAGATCGCTTGCCATACTCACTGCACCAATCTGGCGATGGTTCGCGGAACAGACCCATTTTCCCTTTTCTTGACAAGATGATAGTATGCGCGCC # Right flank : CTTCGACCAGATCATGGCGGGCGGAAGCACTGAAGCGTCCCGGGTTTCGCGGAGGCTCCTATCTGTGAGAAGGAGCTATGATGAACACGATGAGCCAGAGATTTTCGCCTGAGGTCCGTGAGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49998-51672 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITL01000008.1 Gluconacetobacter diazotrophicus strain PR 4 Ga0314203_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49998 29 100.0 32 ............................. ACGCCCATGTGTGTGTCAGGATATTCCCCACG 50059 29 100.0 32 ............................. CACAAGCAGGCGCTCCAGGCGCAGGTCTTCGC 50120 29 100.0 32 ............................. AGCATCGTTTCGATCTGGTGCCATTCCACGTT 50181 29 100.0 32 ............................. AATTGGGGGATTGCGAAAAACCCCCTTAACTG 50242 29 100.0 32 ............................. CTGCGCCTGATATTGTGCTTCGTTTGACGCAA 50303 29 100.0 32 ............................. ATCGTTCGCGGCATCACCGCCGAACGGATGGT 50364 29 100.0 32 ............................. ACCGACGACCTTGATTCCCGCCACGCCGCGCT 50425 29 100.0 32 ............................. GTCAGGAACGTGGACAGCACGCGCGAGAACGT 50486 29 100.0 32 ............................. TAGTTGTTCGCACCCAATTCAATGGGGGTCGG 50547 29 100.0 32 ............................. GCCGTAGACAGTCAGGCCATCACTTCGTCGGG 50608 29 100.0 32 ............................. TAGAGGATCAGCGCGATCGTGATCCAGTTAAG 50669 29 100.0 32 ............................. GTCCCCGGCTGGGCGGTGCTGCGGGCTACGCC 50730 29 100.0 32 ............................. GCCATGTCGTCCGCTAAGATGGTCCCGAGCCA 50791 29 100.0 32 ............................. AAACGTCACATGGGGAGGGTGCCGGGTCAATG 50852 29 100.0 32 ............................. GTGCGGCGATTGGCCGCCATCACCTCCAGCAC 50913 29 100.0 32 ............................. GTTGCCGAGGGTGTGCGCGATCTGGTCGAGCG 50974 29 100.0 32 ............................. GATAAAACATGGCCGACATTACCGTATCGAAT 51035 29 100.0 32 ............................. GCGCTGCAATTCCGCGATTTGAGAGCGACGGC 51096 29 100.0 32 ............................. TCGTTCAGCCGCCACGCGAATATTTTTTGAGG 51157 29 100.0 32 ............................. GCTTCTAAAACCCTCCTGCTGCTTCAACAGAT 51218 29 100.0 32 ............................. TCCTGCATGATCGGAATCTCATAGACCCGCGT 51279 29 100.0 32 ............................. GTTCTTGCATGGAGAGTGTCGGCTGAGAAAAG 51340 29 100.0 32 ............................. GATATTAGGATGAGATGGGAATCCGGTGACTC 51401 29 100.0 32 ............................. CGGACTGGTTCCGGCGTCGGCGCAGGATCAGG 51462 29 100.0 32 ............................. GCGTCGAACAACCTCCCCTTCACCGTCGCGGC 51523 29 100.0 32 ............................. ATCTTGAGTTTGGGGTTGCCGAGCAGGGGGAC 51584 28 96.6 32 .....-....................... CAGGGTCTGGTGATCCTGGACGAGGCCGCCTT 51644 29 79.3 0 .......T....TA...A........T.T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.1 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : TCCTTTCGGCAGGCGGTGCCGAGATGCCTCCGGCGCAGGATGAGGCCATGCCCGTGGCGTTCAAGGACGCGAAAGGGCTGGGCGATGCTGGTCATCGTGGTTGAAAACGCACCCCCGCGCTTGCGGGGGCGTCTGGCGGTCTGGCTTCTGGAAGTGCGCGCCGGCGTCTATGTCGGCACGTACGGTCAGCGCGTGCGCGAGATGATCTGGGGACAGGTGTGCGCCTATATCGAGGATGGCAACGCCGTCATGGCATGGGCCGCCCCGAATGACGCCGGATTCGAGTTCGATACCTGTGGACGCAACCGCCGTGTAGCGGTTGACTTCGATGGTCTCCGACTGGTTTCGTTCGGACCGGAAGCCGCCCTTCCGGCACAACCCGGCCCGGCCGCCACCACCCCTCCGCGTCGGCGGGGGCGGGGCGTACTCTAACCCAGGTTAAGATCGGTAGAATCTTTGACAATAAAATAGAGATTTGAGATCAATGTTTTCCACGAAGA # Right flank : TGCCGGCCCTGCTGAAATTCGCGGCCGATGTCCTAACTTTGGGCTCAGACGCTCTCCCGGGCCCGCTTTTCGCGCGCCGCCTCGGTTGTCGTCCGACGCATTGCGTCGGCGCCGGACGCCAGGAACACGAAAGAACTGGACGATGTGTGACGCCGTGGGCGGTCGTGATGGAATGGGTGCGCAGGATCAGGTGACACGGCGTGCAGGTGGGGCCAGCCAGAACCCCACAAACGATCCCGCCATGCAGGCGGTCCTATGGTCGGCTGAATATCACCATGTCGCTGCACGCCGCAGGCCAAATATAGGCGAAGCGAGAAGGAGATTCCATGGCAGCCGGCGTCGGCATGGATTGGGACGGGTTGCAGGGCACGCGGATGCGTGTTCCCCGCATCCGCGGGGACGAATCGAGGTGGCAACGGCCCTGTTGCCGAAGGACGCTCTTCATTGCCCGCGCGCCCGGCGCCCCCGGGTCAGTTCCGTCACCACGCCGTGCAGGGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123542-123242 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITL01000008.1 Gluconacetobacter diazotrophicus strain PR 4 Ga0314203_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123541 36 100.0 30 .................................... TCAGCCGGCTGGGCATTGCCCTACGAGAGG 123475 36 100.0 30 .................................... AGGGGAGCGCGTCACCTTCGACAAGGGCCT 123409 36 100.0 30 .................................... CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG 123343 36 100.0 30 .................................... TCCGCACGTTCACGCGTACCAGCATCGCGG 123277 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCGTCCTGGCCGCAACCGAAGCGGTAGCCATGTCCGTGGTGCGCGCCATCGAGCATGGCAGTGCCGCGCTTCTCTCGACTCCAACTCTGAAAGCCCGGGATTGACGGTGCGCGATGAAAGCCGAGGACATCCGGTTCATGTGGCTTCTCGTATTTTTCGACCTTCCGGTTCGCACCAAAGAGCAGCGACGACGCGCCAGTCGCTTTCGCCATTTCCTCAAGGATGACGGCTTCTTGATGTTGCAATTTTCGGTTTACGCACGCATCTGCCGAGGACAGGACGCTGTGGAAAAGCATGTTCGGCGGGTGCGGTCGAATCTTCCAAAGGAAGGTAGCGTTCGGACACTACAAATCACGGACAGGCAATACGGACGGATGGAATTGATGCTGGGCCTTGCGCCAAAAACCGAGCGAATCGGACCTTCTCAGATGGTGCTGTTGTGATTTCGGCGTCAAAAAACGCGGAAATCACAACAGTTCCAATTACTTCCCTGCAAGGT # Right flank : TGCTCTTAGCTGTGCCGGTGGATTTTGTGGGCACGAAGAACTCATGATTTTCATCCAATTCTTCCGGGTTTTCCACGCTGCTGGGCGGGTTCCCTCTGGCGCGGCGGGGCCGGTGTCGCTACATCGCCCTGCATGATCGACCGTGACGCCATCGCCGCCGCCATTCCCATGCCCATCCTGGTCGCGCCGCAGGCCATCCTGCGGCAGAAGGCGCGCCCCGTCCGGCCCGAGGATGCGGCGGGCGTGCGCGATGCCCTGCCGCGCATGTTCGCCGCCATGTACCAGGCCCCGGGGATCGGCCTGGCGGCCCCGCAGGTCGGGATGGGCCTGCGATTTGCCATCGTGGATTTGGGCGAGGAAGGCGAGCGCCAGCCGCTGATCCTGATCAACCCGGACGTGATCGCGGAATCGGACAGCCTGGCCTCGCGCGAGGAAGGGTGCCTGTCCCTGCCCAACCAATATGCCGAGGTGATCCGCCCCGACCGTGTCCGCGTGCGCTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //