Array 1 52586-52910 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000014.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 52586 37 100.0 37 ..................................... TCTTCGCTGTTCTGGACGACGTAATCCCGGTCGACTC 52660 37 100.0 35 ..................................... GTCACGGAGCACCTTTGCTGGTGGCGAGTCGACCG 52732 37 100.0 37 ..................................... ACGATGATACGGCGGTGGCCGAGACAGACACCGCACT 52806 37 100.0 31 ..................................... CTCATGTTCATAGCAGAGTCGTTCAAGCCAT 52874 37 75.7 0 ..CA...C....G....C.T...T.........C.G. | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.1 35 GTTGCAATGCGGTAGAAACCCACCACGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACATCTGGGTTGATCTTGTGCAGGTGTATTTCCCGTTGACGCCTTGGGTAATGCTGGCTATCATCGAGACCAGTGCATACCCTGATATGCCGGAGGTGTGGGAGAAGAATAATCGTGATAATGTGGTGTTCGGCACTGTCTAGTTAGTAACCTCCTCGACTGGCGTTCGTCCATCGAGCGCTTGATGCGGTCTCTGAAAATTGTAGTATTGCACAAATTGTATGAACCACTCGCGGACGCTTCGGTGACTGCCCACCCACGAATTATGGAAGCGGTCGACTCGCATTTTGAGGGTGTGAAACCATTTTTCGATGAGGTTTCGCTCGACGTAGTCAAGCCGACCGCTCAATCCTAATCGAGAGAGGGCAGTCTGATAGCCGTAACCATCAACGAGAAACACAGTGTCTGAAAGATCGTGTTTCTCGGAAAGTCGATGGAGAAACGCAGCAGCCGGATCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGCGGTAGAAACCCACCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 112247-111557 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000008.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 112246 30 100.0 37 .............................. TCGCCGTCGGCCTCGACGCCGAAGCCTTCGACCGCGT 112179 30 100.0 37 .............................. ACGCGGAGCTCCTCGTTGTGGTAGACGATCACCCGCG 112112 30 100.0 35 .............................. GTGTGACCGACGAGGGCCGTCTCTTCCAGGTCGAG 112047 30 100.0 37 .............................. ACGTGAGCGAGCCGGTCGAGAAAGGCGAGGTCATCGG 111980 30 100.0 33 .............................. GGGACCGGCGTCGGCCTGATCGTCGCCGCGCTC 111917 30 100.0 36 .............................. AGGTTCCACGCCGGTGGCGACTCCGACCCACAGACG 111851 30 100.0 35 .............................. TCTTCTTCGACGCAGTCGATGAGCAGTTCGCGGTT 111786 30 100.0 36 .............................. GAGTAGACAAAGACCGAGACGCCTGGGACCCAAACC 111720 30 100.0 37 .............................. ATCACGCGCTTGATAACCCATCCAGTCTTGTCGTGCT 111653 30 100.0 37 .............................. ACCTCGGCGCTCCCGACGTACTCGTCGGTCGAGCCCG 111586 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : TTGAACCGATTCGACTAGATACACTCTACGTACGTGACGAACTGTGGGACGTCTGGAAACGCTATTTTGAGGACGTATTCGAACCGGAACCCCTCGAAAAGAGCTAACTACTCTTCGTCCTCTTCTGGGTCGTCTGCGAGGGCAGCATATAGCTCGTGGTTTTCCTCCACATCGCGAGCCATCTGTTTTTCTGCTTCCCAATTAACGCTCATACTCCATCTAATGGCTATCGCTGTATTAGGATTTCCGGTGGTCCGATAGGAGCCGAATCTGTGGCCCACTGTCGTCGGTGTGTTCGATACCTTGGGTTCGAGACTCTAGCTCATTTTGAGCGTTGGGGTCTCTGTCCGTGCTTGGACAGCCGGCGACGGAACCAGATGCGTGACTGAGTAGTCTAGAGTTCCTTCGACCCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACGGAAACACTTGAGTGGGAACGGGGTGTATGAGGGCTGTGGTGGCCAAATCGGCCATG # Right flank : GAGGCGACCAACTCACCTTGTTGGCTCTCGGCAGAGAGTCAGATACTGGTGCGGCCCGCGCCGCTGCCGACGCACTATCTTTCTCGCTGTCGAAGCCCCTCACGCTCATCTCAGGCACTTCCTGAGAGGCACTTCCTCAACGATTGGGCAACGCACTCGTCGCCGCCCCGCCGTCCACATGCGACGTAGGCTCCTCACCTCTGATGAAGGCGTTACGCTGAGTTGGTGTCGTTGACCCACGCCGGCCGCTCAAGCGTGGTGTTGTCTGAATCAAACTCGAATGTGATTCTGTACGCCGTCGGTTCGTCACTGGCGAATCTGACCAGTGCGTACTCCGCGTACGTCCCCGCAGGTTCAGTCACGTCCCACGATACGTTTGCCGATTTGACCACGTGCGTATCGGCGTCAGCATGGACCTCACCCGCCGCATCTGTGAGACGATACGCCTCTCTTCCATCGTACCACCCGGACTGTGGCTCGTAGACAGTCTCCCCCGACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 113697-113272 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000008.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 113696 30 100.0 36 .............................. TGCTTCCAGCCGGTGAGACGATGACCGTCTATTCGC 113630 30 100.0 38 .............................. GAAGACCTCGAAGACGTCCCAACCGTCCCGTTCGAGTG 113562 30 100.0 36 .............................. CGCCATCGCCGCCGCCGTTGTACCCGCCAGTAGGCG 113496 30 100.0 36 .............................. CTCGAAGCGGAGTGGGACAACCTGCCTGAAGAAGCA 113430 30 100.0 34 .............................. ATGGGTGTGAGGGTTGTTGGTCGACCGCGCCGGC 113366 30 100.0 35 .............................. AAGGACGGTTCCACCGGCACGAACAGTACGGTCGA 113301 30 73.3 0 ..C.....T....TTC.......A..C.A. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 96.2 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : AACCCTAGTTGGGTTGAAGCCTCGGGTAGCCAGTGAGTGAGAACGTGTAGTTACCACTGGTTACAGACGAACCCTAGTTGGGTTGAAGCGGACAATCGGCTTGTACGAAGCCGATCAATCAAATGGTTACAGACGAACCCTAGTTGGGTTGAAGCATAAGCGAAAACGCCGGAGACGTGAGTGATGACTGAGTTACAGACGAACCCTAGTTGGGTTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTTCGTCCTCCAAATCGAAGTGAACCGCGGTATCGAGTTACGGACCTGCTCTTGTGGAGTAATTGAATCAGTTGGACTACGCAGCGTATGTGTCAAACCTTATTGGGTGCGTACGAAACGTACAACCTAGATGGGTGGGGGAACGCTCCGAATCACGGACCTATCCGCATTACGTCCGGAGAATTTCAAGCTACGAAATACGAAATTCCTGATGGACGATAGCCTCCACTACGACGTACAAACGCACGAGTCACGACAGCAACTTCGGCACAGTATCTGGGTCGTGAGAAACGGGGATATCAGACGTGTCCTGGAAGACTTCCCCCGAGATGAGCCAGTCCACGACCAGTGCGCATCTTGGATGCACGCAGTTGTCGGCAAGCACTTCTTCCCCGACGCGAATCACCGAACTGCAATTGCACTTCTTCGCCAACTCCTCGTCGAAAACGGCATCAACCCCGGTCAGTGGTCTCCCGAACGGACGAGGCAGGCACGCGAC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 114623-114042 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000008.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 114622 30 100.0 37 .............................. GCCTCTTCGAGCCCGTCGACGGTCGCCGCGGGCCCGT 114555 30 100.0 54 .............................. TGGGTATCGGCGTGCGGGGCGGTAAGGCCGGCGCGTTCTGCGCCGGCCGCATTA 114471 30 100.0 39 .............................. GATGGCAACCGCGCCGGTCCTCCACGATGGGGCGATCTA 114402 30 100.0 36 .............................. GAAATCGACCGGAGGTGAGTACTGATGGCGGGTGAC 114336 30 100.0 35 .............................. AGGCTCACCATTGCGACCACCCGCACGTTCGCGGT 114271 30 100.0 35 .............................. TTTGATGGTGATGTGACCGGGCGTCACGTAAGAGA 114206 30 100.0 39 .............................. CTCGGGTAGCCAGTGAGTGAGAACGTGTAGTTACCACTG 114137 30 100.0 36 .............................. GGACAATCGGCTTGTACGAAGCCGATCAATCAAATG 114071 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 9 30 100.0 39 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GAGTACACGTTGCATGCGACCCCGGTCTCTGCGTCTGCGATTGATGACGACACAGAGCGGGTCGATTTCGCCGCGTTGTCTACGGAAGCGAACGCTGCGTTCATGGACGCACTCGATGACGGACAGCACACGGTTCGCGGAGACACGCTTCCACCACAACTCGTGGAACATCGCTACGTGCGGTACGAGGGGACAACTTACCGTCTCGAAATCGCGTTGTTCGAGATTCCCGTCTGGCGATTGTCGGTTGAGAAGGCATCCACGTAGCGGCGTGTCTCCCGGGTTCCAAAGAGTGGGTGTGATTTGGGGGACGCTCCCGCCGAATAGCAGGACTCGACGTGATTCCGAGCGTTGTCTGGCTGACCAGTGATTAGTGTTTCTGTGGGTCGCGGTTGCAGCGTTCTTTCGACCCCCCGGGGGTTTGGGGGTGATTGGAGGTCGACGGAAACACTTGAGTGGGAACAGGGTGTAGGAAGGCTGTGGTGGCCAAATCGGCCATG # Right flank : ATAAGCGAAAACGCCGGAGACGTGAGTGATGACTGAGTTACAGACGAACCCTAGTTGGGTTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACAGACGAACCCTAGTTGGGTTGAAGCTGCTTCCAGCCGGTGAGACGATGACCGTCTATTCGCGTTACAGACGAACCCTAGTTGGGTTGAAGCGAAGACCTCGAAGACGTCCCAACCGTCCCGTTCGAGTGGTTACAGACGAACCCTAGTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 421-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000004.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 420 30 100.0 34 .............................. GGCGACGGAACGCAGAATCTCACCGTTGAAACTG 356 30 100.0 35 .............................. AGAGCGTGGTCGGTTGGTAGCCCGTCCGCGGGATG 291 30 100.0 37 .............................. CGTTCCCGTACGTCGCGCTCCGCAACGGCAAGGGCGA 224 30 100.0 34 .............................. AAGCTCGCCGTCTTTGATTCGGACAGGAACCGCA 160 30 96.7 35 ..............C............... ACCACGGAGAGGCCTTCTACCCAAATCAGGCCCAC 95 30 96.7 35 ..............C............... GAGACACTCGACTCGCCGTCCGTCCCGTTGTAGGC 30 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTACAGACGAACCTTAGTTGGGTTGAAGG # Left flank : CGACAGCGGGAGGACCGGAATGGGGATGCTCCCGCGCTTCTCGGAGAGCGCCCCGGTCAGCAGCCACGAGAACCCGTTTGCGTCGTACTCGGGCTTTCGTTCCGCGAACAGTGCTTCGAGTCCAGCAAACGCAAGCCGAACCCCGAGTTCTATCCAGTAGACCGTCAAGAGCGCGACGAGCGACCAGTCGAACGCGACGACACCAACTAGTGGGACCGCATTGAGCGCCGCCAACGCGATGAGGCGGGCCCGTCGCTTCTCGCCGTCGGTGAACTGCATTGGAGGGTGGGTTGGCTTCTGGCTCAGGGCAGTTAGGTTGACGGATTTTTGTCGTGTGTGGCTGGCTGCGAGCCTCGTGGTGGTGTCGGCAGGGACCGACACCTACCGAAGTCGTCTGTACTCTCTGTCGACCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACGGAAACGCTTGAGTGCGAACGGGGTGTATGAGGGCTTCGGTGGCCGGATTGGCTATA # Right flank : G # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCTTAGTTGGGTTGAAGG # Alternate repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 326890-325848 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAD01000004.1 Haloferax larsenii strain CDM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 326889 30 100.0 36 .............................. ACCCACCCGACCTCGCCGGGGAGGAGGCCGCTGTTG 326823 30 100.0 36 .............................. CATTACAGCAGGACCCCCCAGAAGCCTGCGGAGAGT 326757 30 100.0 34 .............................. GGTCAGAGCGAAGTGACTCGACTGCCGAGTGCAA 326693 30 100.0 37 .............................. GTCGACCGCCGTCGCGACGACGTCGAACGTCTCCCGC 326626 30 100.0 37 .............................. AACGCGGGCGCAGAACAGTGAGGCGCGTCATCCTCGG 326559 30 100.0 37 .............................. GTCGTGTTTAACCAGAGTGTCCCCTCTGTCGCTGTGT 326492 30 100.0 39 .............................. GATGAACGCGACCATGACTGGCGTGAGGCCGTTCACGAG 326423 30 100.0 36 .............................. TCGTACCACGCCTCGATGTCCCCCAACGACGGAGGG 326357 30 100.0 47 .............................. CCGCACTTGCCGAGGTAGTCGCCCTGCGCGCCCGTGAGTTACAGACG 326280 30 100.0 43 .............................. GAGCGTCTGAAGCTCGACGCCGTCCATCGTCGAGAGGTCCATC 326207 30 100.0 35 .............................. ATGGTCTCGACTCTATTGGGGTTCGTGCTCCTGTG 326142 30 100.0 35 .............................. ACGACATGGCCGAAGCAGACCGAAAGTTGACGGCA 326077 30 100.0 36 .............................. GAGTGCAACATCGCGCAGTTGCTCGGTCCACTCGCG 326011 30 100.0 38 .............................. TCACCCTCGCTTCGGGCGAAAGTGACGGGCATCCCCAC 325943 30 100.0 36 .............................. CAACTGAATCACTGGGAGGAAGTCGATGCTGAATGT 325877 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 16 30 100.0 38 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ACTGGAGCAGACAGTCGACCACCCGCAATTGAATCGGAAGGTGAGCTACCAGTATCTCCTGCGAATCGAGGCCTACAAACTGAAAAAGCATCTCCTGACTGGAGAGGAGTACGTCCCGTTCAAGCGGTGGTGGTGACGCGTGGTGTATCTCATCGTCGTGTACGACATGCGGGCAGACCGGACGCGATTGATGCTGAATTTCCTTCGGAAGTACCTCACTCACGTGCAAAACTCGGTCTTCGAGGGAGAAGTCACAGAAGGTGATTTGGAGACGATTCGAAATCATACTGAATCGCTGCTGAACCCCGAGGAGTCGGTGATTATCTATCGCGTTGGGGCTGCTCAATACGTCGACCGGACAGTTATCGGAGACGACCCGATTGACGATGCGCGGTTTCTGTAGCTTCGACCCCCCGGGGGTTTGGGGGTGATTGGAGGTCGACGGAAACACTTGAGTGCGGACGGGGCGTAGGAGGGCTGTGGTGGCCAAATCGGCCATG # Right flank : AGAAGTCACGCAGGCCACGAAATTACCCCGCTCGCCGAGTTACAGACGAACCTTTGTGAATTAGCTAAATTATCTGGGTTACGTAGAATATTCACGTGTTGTGTCACTGGGTTCGCGGAGACGACGACTCCGTTGGCGGTGTCCAGTCATCGAGTTTGGCGACGACGAACAGTACGGGCGACTCAAAGAACTGAAGAAGCACTGTAGGCTGACGTGGGAGGGAGGACCCCTCGAAGACGAGACGAAACTTAGGGTGGGTTCCCCGGTGTAAGCGTCGAGCGTGGTGGATGTCGTAGAATGTCGGATTCAACCCCTCTAACGGTGGGACTTTCTCCTTGATTCAGATGGGGTGACTTGCAGGGTCAGCCCTACAACTTTGACTGAGCGTTGTAGGGTTGACCCTACAACAGTAACCAATAGTTGTAGACCCAACCATACAACTTTGGTGGGAAGTTGTGGGGTCAATCCTACAAGTTATACTGCTTGGTGAGAGAGTACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //