Array 1 726-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000935.1 Fischerella thermalis CCMEE 5318 NODE_1393_length_16961_cov_17.200991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 725 37 100.0 34 ..................................... CGTACCCATCACCTAATTTAGTTCTGGTGACAGG 654 37 100.0 34 ..................................... GGGTCATTTACTACCGCAAAGCTAAAGCTCTAGG 583 37 100.0 33 ..................................... TTATTGCAAGTAATATTTCCTTTAACCACAGTA 513 37 100.0 36 ..................................... TTTGCATGTTACCGACCTAATAAAAAAGAAATCAAG 440 37 100.0 37 ..................................... CCTTATCCTTTTTCGCCATCAAGCCCGTCACCAAGCC 366 37 100.0 35 ..................................... GAGATGTGCCAAGCGTAAAATCAATTCTCGGATTC 294 37 100.0 33 ..................................... AGGCTGGCTCATCAGGCCACTAATGGGGGATAT 224 37 100.0 36 ..................................... CTGAATCTTATTCAACTGAAGATTTGATTGAGCAAC 151 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 35 GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : GCATAAAGGTATGTTCTGCTTCATACATCAGAACTTTGTGAGGTACATTAGCATTTTCAAGAGCTTTAATTAAGGTTTGACGATCCAACTCTGGTATATGAGGGTCGAGTGTACCGAAGACCATAAGCATCTCGCCTTTGATTTCGCTTACCCGCCCGATTGTATCAGCTACTTCCTTACCCAGCTTGCCACTGGGGATACCTGTAGGGTAACAGCAGACAGAAACCTTTATTTCGTTTTGAAAAGCTGCTCGAAAAGAAAGATGTCCACCAATACAAAAGCCTAGTGTGCCTATTTTATCTGGACAAACCCAACTCTCTTTTTTAAGAAAATCAATTACAGCACGACAATCAGCATCATAGTCAGCGATCGCAGTCCGACGAGCATTATCATTACCCCGCATTCTACCAATATCATCTGGTTCAATCACTAAACCAACTGGTTCTGTGCGATGAAAGATTTCTGGAACTTGAATACACCAAAGCACGAGCGATCGCACG # Right flank : CATCATCACAAGTGACCACAAAATTAATAGGACAATCGTTGCAACTAACATTAACTCATATCTTGCACCAAACGTAGATACACGTAAAAAAACAATAATCAGTCCAAAACTATAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 2617-1706 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000366.1 Fischerella thermalis CCMEE 5318 NODE_394_length_2599_cov_12.141208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2616 37 100.0 34 ..................................... TATAAAATAACTTTCACGGCATCCGGCGCTGTTG 2545 37 100.0 36 ..................................... GTTCGCAAGATTCTTTCTTTTAAAGGTTCACAGTAA 2472 37 100.0 39 ..................................... ACCGCTTTTGTGGGGTTGGCTTGCGGGTGAGCGCTCCTC 2396 37 100.0 35 ..................................... CAGCCCAACGCGCCCAAACCACAGCTGACCAAGCT 2324 37 100.0 36 ..................................... AATATAAGTTGTGAAAAGCGATTTGATTCAAGAGGC 2251 37 100.0 33 ..................................... TTGGTGGTAGTTGTAGCTATTTATCTACTCTCA 2181 37 100.0 36 ..................................... TGTCAGCCTTCTGGGTATTATTCAATTACCAAGTCT 2108 37 100.0 36 ..................................... GAAGGCAAATGATGAGCGATCGCGCTTATCAAAAAG 2035 37 100.0 35 ..................................... GTGATTTTTCAGGCAATGATCGACAAAATCGATTT 1963 37 100.0 38 ..................................... TTATCCACTACGTTGATAGAATTCCTATGGATAAGCGT 1888 37 100.0 38 ..................................... CACGCCTTGGTTAGTTGGGCAAATGAGAAGTTTGTAAA 1813 37 100.0 34 ..................................... CCCTTGGAGTAGAAAAGGGCTGGTTGGAATAGTA 1742 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Left flank : ATTGAAATTGCAACAAAATCTAGAGGAGTATCACAACCAAGGTATT # Right flank : TGCTAGATTCAGAAGCTTTGCTGTATATGGTTTTCAAGGTTCAGTGGTGCAGACCTAGACAAAATATAGCTTTTCAGCCATCGGGGTGTCAAGATGAATTATGAAAAAATAGCTCAAAAGCTTTGCTGGTAAGACTTTCAGAATTGGTGCAAACCTAATTTTGAGTGTAAAAGGGTTCAAAGCCATAACAGGTAGGGCTTATAGCCATTAAATTTGACTGCTTTTTTTAAACACCTACAGGTTTGCACTAACTCTAAGCTGAAGAGAGATTAATCTTTATTTATCGACTATAGCAAAACTTACAACTACGCTTTTGGAGCTGGCTTTTGCCGTTTAGCTGGAACCACCTCGAACTCAAAAGTAGCAATACGGCGATCGCCAACATAAACTTCTATCTTATGCTTACCCATAGGATCACCAGTTGCGATCGTCCAAGAGTTTGTAATCACACCATCTTTGATTGAGTCTGTGCGTTGAATATTTGCTGCTGTACCGTCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5885-6494 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000434.1 Fischerella thermalis CCMEE 5318 NODE_475_length_6479_cov_15.350054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5885 37 100.0 34 ..................................... AGCTCAAGTAGCAATTGAAATCGAAGTAGAAATT 5956 37 100.0 33 ..................................... GTTACCTCTCTTAATTTTGCCTCTATAACCATT 6026 37 100.0 36 ..................................... ATTTATTACACAAAAAAACTGCTTTCACCGCAATGA 6099 37 100.0 35 ..................................... GCTTTGTGATGGCAACTCTTACAGCACCACGCAGT 6171 37 100.0 36 ..................................... CCGAAGATTTAGCCCATGACATTGACCGATGGGTGG 6244 37 100.0 34 ..................................... TCGGCAGGAATTGTTTTGCGAGAATCGAATACTA 6315 37 100.0 35 ..................................... ACCGCGAAATTGTGCGGATGCGTCGTGATGCGATC 6387 37 100.0 34 ..................................... ATTGGGAACTATGCACTGACAAAGCATATAAAGA 6458 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGCGTGGAAGCAACGCCAAAAGTTTGGGATCTAGCCGCCGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTCCTTTATCTGCTGGCGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCACTCTCCAAGTTGCTTGATTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTGACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACCGTACCTTGAAAACTAAATACTGTAAGGGTTTGAGTTCGTAGCA # Right flank : GGAGTTGGGTTTGGAGCTTGCCAATAGATATAAGAAAGTTGAAATCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 7061-7677 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000052.1 Fischerella thermalis CCMEE 5318 NODE_52_length_7656_cov_15.940047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7061 37 100.0 36 ..................................... TTAAATATTAAAGCAGCACCTCCAAAAATCGCGGAA 7134 37 100.0 33 ..................................... AACACTTTTTGGGGCGATCGCGCTGACGGGAAA 7204 37 100.0 33 ..................................... GCTCTCTTGGGAAAACGTTGTTCTGAGTCGGGT 7274 37 100.0 35 ..................................... GAGTTAAACTCCAGGGGAGGCTCGCTCCGGGGTGT 7346 37 100.0 40 ..................................... AAAATGGAGCTTCCCTCCTACGAGAGGCTCTACGATGCGG 7423 37 100.0 33 ..................................... AAATCTTAGCAGATCATTACCAGGTAGTATTCC 7493 37 100.0 38 ..................................... GAGATTGACCCATATATATAGGATGAGTTTTGAAACCT 7568 37 100.0 36 ..................................... GGTTTTGGCTATGGTTGAGGCTGTATACCCGCTATT 7641 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Left flank : TTTTAGTCTTGCTGGTCTGTTCGTAGCGGTGATTGGTGCGATTATTGCAATTTTCTTGTACTACCAATTTACTCGCAGAGCTTACTAAAGCTTCGGTGTCAAGGGTAATGAGAATTGGGTAAGAGAAAAAATTTTTCCCTTACCTTTTTGTTTTTGAATATGCAAGCCTGAAAGCCCGCAAGTAAACTGCGGGCTAATAGTTCAAGTCTACTTGAAGTAGACTAAGAGATTTTATAGTCGTCTTAAGACGACTTTAGCTATAAGCCAAGGATTTTAATCCTTGGCGGTTGTTGTGTAAGTTTACAAGACGTGAACAAATAGGGATTAATGCCAGGGCGTTGCATAAAATGGGGATGAATAATGAACCGCCAAGACGCCAAGAACGCCAAGAATTGAGTTTTCAATTAAAACAGAAAATATAAATCACCCCGCTTTCTCTGCAACGCCTTTAAGTTGTAATCTCAAGCAGTAAGCTTTAATTTGTCAAATGCATACTACGG # Right flank : CGTTACCCGCTACAGCGATTTTTCTCCCAAATCGTTTCAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 650-809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000518.1 Fischerella thermalis CCMEE 5318 NODE_575_length_745_cov_13.311409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 650 37 100.0 37 ..................................... AATCTCTCCAAACTTGATACTCAATTAATTTTAAGTC 724 37 100.0 12 ..................................... AATGAATATGCA 773 36 54.1 0 C.C......CC..CCCC..G..GG.T.CA.C.T...- | C [784] Deletion [809] ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 84.7 24 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATTCACAAAGTTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGCGGCGAAATGCCAATGGATACTACAGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATTAATTTTTGGGGCTGAAATGCTGATTATGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTATCCTGACTAGATTTGAGCCATTTTATACTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAAATCGAGCA # Right flank : | # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.24, 5:0, 6:0.25, 7:-1.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 402-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000586.1 Fischerella thermalis CCMEE 5318 NODE_664_length_2026_cov_15.347483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 401 35 100.0 41 ................................... TCATTGAATTTAACAACCCAACAAGTGAACGCTGGAGTCAC 325 35 100.0 39 ................................... TGTAACACAAAAAATGTTACAATCAGCGAAACCAAAACC 251 35 100.0 38 ................................... TCCTTTGTCGCGTAGTTTAACTAGACTTTCGACACAAG 178 35 100.0 37 ................................... ATTGCATTCTGCTTCATTGCAATGGGTAATCAGCCTT 106 35 100.0 34 ................................... CCTTTTGCAGGGTTGTTACCGTTTACGAGTTCTT 37 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 100.0 38 GTTTTCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Left flank : TTAAATATTGAGGCGACCTGTAGTCAACAATTGATATCCCCCGACAAAACAAGCCATTGAAAGGCAAAACTGCCAAAGACTTGTAGGGTTGAGGATAGCGCGGCTACTGAGCCAAATGAGAACAATTCCTATTCCCAGTGCCACCCAACCTAAAGCCTTCTCCTGACGGGGTAGGACAAATAACATAAGAATTCCAGAAGTCAGACAGAGTATAGAAGCATCAGCAGCTATACCACGCCACCAATAGGGATATACATTGGTAGTAAAATAAATATTTTGACCGAGAAAGTAAACTCCGGCTAGCAGTAATACTAAACCAATCAACTTGAATAAAAATCTCATTATTTAAATGGTGACTTGTACTAAGCCTATATTACCCAAATAAAGAGATTGAGGCTTCAAAGGGGCAGAAGCGGTAAAATGACGCAATTTCTGATTATTAGCTCTCCCAAATCGCAACTAATACCATTTCACGAATCTTTACAGCAGGATGGCATGAA # Right flank : CTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 37-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000660.1 Fischerella thermalis CCMEE 5318 NODE_768_length_1207_cov_14.169843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 37 37 100.0 31 ..................................... CTCTGTTTCGTAACTGGATTTTTCTATTTGA 105 37 100.0 42 ..................................... TCCAATCCACAATGCCACCTTATCCGGGCTAACACCGCTACT 184 37 100.0 33 ..................................... AGGAAACCGAATAATTTGTAAGGAATTGAGGCG 254 37 100.0 31 ..................................... GAATAATTCACCGTAATACTTACTACACCAG 322 37 94.6 0 .......T............................A | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 98.9 34 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : AACCCAGTGCGATCGCTGATTAAATCGGATAGGGCTG # Right flank : AAGTATTTTTAAGCTAAAAAATGAGATTGAGAAGGTAAGCTTACTCCGCCCTAAAAGTGCGGAGCTTTAGCCACAGATTTGAATCATCGAAAACAGGGACATCTGTCCTTGCAATTGACAGCTCATCCCCGGACTTTCAGGATTGCTTACACAAACTCCCAAAGCTGCAATATTCAATGCAGCATTCAAGTCAGCGTCATGCTCAAAACCACAATGTCCGCACTTGAACAACTTGCCAGAACGATACGATTTGCCTTTTACGGGGTGTACATGGTGACACCGCGAACAAGTTTGACTGGTGTAGGCGGGTGGGACAAACACGACGGGTACACCAGTAATCGACGCTTTGTACTCTACAAACAATCTCAATTGGTAAAAAGCCCAATTGTTAGTTCTACGTCGTTCAGATTTAGACCGTGGTTTTTGGTTAAGCGATTCTCTGATATTAGTTAAGTTCTCAAAAGCCAAAGCAGCGTGACTGCGTTTAGCATCTTGAACAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 11324-9771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQE01000705.1 Fischerella thermalis CCMEE 5318 NODE_828_length_11316_cov_13.944857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11323 37 100.0 35 ..................................... GAATTTACGTTAAAATTTGGCTGTGACTTTGACCA 11251 37 100.0 34 ..................................... TAAAAAAATCACGTGTTGATTTGCAAGGGCAAAT 11180 37 100.0 37 ..................................... AACGATAAGGGATTAAGAGAAGGGTGCAAAAAGTATT 11106 37 100.0 35 ..................................... TACTCATTTGAGCCTCTTTTGAGTTTACACCCCTA 11034 37 100.0 35 ..................................... ATAAAAGCAAAAAATAAATCAGTTAAAAAAGAAGG 10962 37 100.0 36 ..................................... ATTTGGCTTTAAATCTCTTAAATTTGTGTAATCACT 10889 37 100.0 33 ..................................... ATCACCGACAACGCCAAATCGTTTGAGAGCATT 10819 37 100.0 38 ..................................... AGTTTTAGTTAATAGCTATTCCAATAAATATTCCGGTT 10744 37 100.0 33 ..................................... AAAAATAATGATACTCGACTCCATAATCAAAAT 10674 37 100.0 34 ..................................... TATCTATTGGGAATGTTGGGTTTTGGGTATCATG 10603 37 100.0 36 ..................................... TTAGAATTTCTTTTTGGTAGAGAAGGCGCACAACAA 10530 37 100.0 34 ..................................... TTAAGCTCCCGTGATACCAAGAGTTGCCAGCCAA 10459 37 100.0 35 ..................................... CGATATTCCCCAACGCCCCTTGGATTTTGCCTTGT 10387 37 100.0 34 ..................................... TTCCTTTCCATTCAAATTCATATTCATGGGTATA 10316 37 100.0 37 ..................................... CATGAAAGTAAAGGTTTAATATTTTTTGGGCAAAAAA 10242 37 100.0 38 ..................................... TTCTTACACTGGTTTTTGGGCTGAAACCCAGTGATAGC 10167 37 100.0 38 ..................................... GCTAGAATCCACGGAGTATGAGTCCGCAGGTCTGTAGT 10092 37 100.0 37 ..................................... TTTCTTTTAATCCGTATAGTACTGTATAGTGTTCGTT 10018 37 100.0 33 ..................................... GTACCAAGAGGAATTTTGATACTATCGCCAACC 9948 37 100.0 33 ..................................... TCAACCAGACTTAAAAAAACCAATCTTAATCTC 9878 37 100.0 34 ..................................... ATCGACGGGAATGATTTTTGATTCTCCAATGATT 9807 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 22 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTATTAGGGATTGAAACCAGAAGCGTTGATTCCGGGATGCCCTCCCGTATTTTTAA # Right flank : ACGGTCAACAACATCAGAACTAGCGATTAAGCTAGAAATGAGAGGAATTATAAATATCAACAGGGAGACAAGTGTGAACAGTGTAGTTCACTGGCAACAACGAGTAGGTAATCAAAGAGACTGGGTATGGCGGGGTTGGCAAACTCGCTACACCTATATTCGCCCTATCCAAAACCGCCTTAACACAACCCCCCTAATTTTGCTGCATGGGTTTGGTGCTTCTATTGGACATTGGCGACACAATTTAGAAGTGTTAGGAGAACAACATACAGTCTACGCGCTAGACATGCTAGGTTTTGGTGCTTCCGAAAAAGCTTGTGTGAATTATAGTATCCAACTTTGGGTAGAACAGGTTTATGATTTTTGGAAAACATTTATCCGTCAGCCTGTCATTCTCATAGGTAATTCCCTCGGTTCTTTAGTCTCCTTAGCTGCTGCTGCTACTTATCCTGAGATGGTGCAGGGTGTGGTGATGATGAGTTTACCAGATCCATCTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //