Array 1 59370-60131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOS010000016.1 Escherichia fergusonii strain FT109-1 NODE_16_length_66385_cov_35.255954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59370 29 100.0 32 ............................. ACTGGCTGGCCCCGACACCGCCCGAAACCGAA 59431 29 100.0 32 ............................. TGGCCGAAGCGCATGAGCGTGGAGGTGCAGGC 59492 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 59553 29 100.0 32 ............................. GTGCCGCTCGTATCGTGAGCGTTGTACGGTGT 59614 29 100.0 32 ............................. AGGATCTTTTCTTGATATCAAACTGGTCTGGT 59675 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 59736 29 100.0 32 ............................. ATTACGGAATGGATGAAAACTATAACTATCTC 59797 29 100.0 32 ............................. CCCAGTGGCTCCCATGCCAGGCTCGCGGCTTC 59858 29 100.0 33 ............................. CAGGGATACCGCTGCGTTTACCTCCTGGTTGGA 59920 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 59981 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 60042 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 60103 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.8 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATAGCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9333-10093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOS010000014.1 Escherichia fergusonii strain FT109-1 NODE_14_length_109500_cov_36.269728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9333 29 100.0 32 ............................. ATTGCCTTCAATATTCCGGTATACATAGGCAC 9394 29 100.0 32 ............................. TTAATGACAAATAGCCCAGCGTTACGTAAAAA 9455 29 100.0 32 ............................. GCCTCCAGCACGTTGTTCGCCCATTTTCATTT 9516 29 100.0 32 ............................. ACACCAGAAACCCGTGCGGGGTTTATCCTGGA 9577 29 100.0 32 ............................. CACCCGAAACGAACGGAACGCGCTGGAATCCG 9638 29 96.6 32 ...........................T. CGTTTCATTTGCTGTAGAGACGGTTCTTGAGT 9699 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 9760 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 9821 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 9882 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 9943 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 10004 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 10065 28 79.3 0 .A..........T.........-.CT..C | C [10070] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTACCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATAGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //