Array 1 2847-587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABANE010000010.1 Flammeovirga aprica JL-4 strain ATCC 23126 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2846 30 100.0 35 .............................. TTGGTCAACACTAGCAAGCAGAAAAGGGTAATGAA 2781 30 100.0 35 .............................. TTGTAAGAAAGCGACATCATTGTAATATCATTTGA 2716 30 100.0 36 .............................. AGATATAGAGCCAGGACCTTTTGTTGCATAAGTAGC 2650 30 100.0 36 .............................. TTTGTCGCAATAAGACTCTACTATCTAATTGTACAA 2584 30 100.0 36 .............................. AGGTTATTAGAGCTATTACTTTGGGTTAGAGTTACC 2518 30 100.0 36 .............................. TTATGATAAGCTAACATTAATACTTTTTCAAATAAT 2452 30 100.0 36 .............................. GTATCTATCCCATACACACGACAACTTTTAGGTAGG 2386 30 100.0 35 .............................. TTGATTGTATGCTTTTCTGTAAGGGATATAAATCA 2321 30 100.0 34 .............................. TAAAATAATGCAAAAGGAACGGGATAATTTTCAG 2257 30 100.0 34 .............................. ATTAAAAAAGAAGCAAGTAAACGATAATTAAAAG 2193 30 100.0 36 .............................. TTGATTGTATGCTTTTCTGTAAGGGATGTAAATCAA 2127 30 100.0 36 .............................. GTAAATCACAAAGATCTAGTGTTATTTGAAAGGGAG 2061 30 100.0 36 .............................. TCTAATAAATTTGTATAATCAAACTCAGAACTTTCA 1995 30 100.0 36 .............................. TTAACCTGTATTTTGCACCTAAAATTGGAGTACCTT 1929 30 100.0 35 .............................. AAAAACGGTTAATGAGCGTATCGCATCATCTGAAA 1864 30 100.0 35 .............................. AATACATTTGCTAATGAATCAAAAATACCTGCCAA 1799 30 100.0 35 .............................. TGAAAAGCAGTAAGTTTGAATTAATACGTGCTAAA 1734 30 100.0 36 .............................. ATGCTGTAGATAAACACTTCAAACAAAATGAAGCTG 1668 30 100.0 36 .............................. AAGACAAGAAGAAAGACACTGTAAAGGAAAGCTCTA 1602 30 100.0 36 .............................. AAAAAAAATTGATCAAATTATCGAGGACTTTTTATT 1536 30 100.0 35 .............................. TTGTCAGTAGCATGTGAAGGTATTTCGGAAGTGGG 1471 30 100.0 36 .............................. ATAGTAAGAACTAAACTCCAAATCATCCAACTTAGG 1405 30 100.0 35 .............................. AGCAGAGCAAAAAAAGTTTATTGGCAATGCGGTTG 1340 30 100.0 35 .............................. TTTATGTAGATATGGAACTTATAAAGGTAACAGAA 1275 30 100.0 36 .............................. ATGAAACTCCCTAACTACTGATATAATCATACTTTT 1209 30 100.0 36 .............................. TCTCATATATTTTATTCATGATCGGTTCGCACTTTC 1143 30 100.0 35 .............................. AGTATTGACAATGAATTATATATAGCTCTTCTAAT 1078 30 100.0 36 .............................. ATGAGTATCATTTTCAACATATACTAAACTTTCTGA 1012 30 100.0 36 .............................. TGAATTTGATCTGTACTGCTACATCAAGTACATCTA 946 30 100.0 37 .............................. TAAGGGAAAGGTTCTGTTGCCAAGTCTTCACTCCGAG 879 30 100.0 36 .............................. ATAAGTTTGCCTAATCTCAATTGAGATATTACTTCT 813 30 100.0 36 .............................. GATAATTCCTTTGTCTGTCACCTTCCTTTCCTCTCC 747 30 100.0 36 .............................. TTCATTACGATTTCCCCGGCTTGAAAAGCTTTGATG 681 30 100.0 35 .............................. AGGATGCTAATTCATTTTCAAAAATGGAAAATCAG 616 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 35 30 100.0 36 ATTCAACAGCAACCAATGTGGTATTGAAAC # Left flank : TTGGTTTTAAAAGTTGGTGGTAAAAATTAGATGCTATGTATGTAATATTAGTGTATGATATGAATACAAAGCGAGTAGGAAAGATGCTCAAACTTTGTAGAAAATATCTGAATTGGATTCAAAATTCTGTTTTTGAGGGAGAGTTAACAAAGGTGCAACTTGAAAACCTTAAAGCAGAAGCAAAGGAAATTATGAAGGAAGGGGACTCTTTAATTCTCTTTAAAAATAGAGAACAGTACTGGCTTCAGAAAGAAGTGATCGGTGAAGAGAAATCATCTATTGATAATTTCCTTTAGTCGTCGACCTCAAAGTTTTTTCATTTCGTTCTTTGACATTTTGTAATAATTATGGATAATCACCCAAAAACAGTCTAAAAAAGGGGTTGTCGATGGAAGGGGTAAATCGTATGACCATAGGTCGACGATATTTTTTGATGGAAATGAGTTATTAAACCCTTTTTTTATGTATGTTTGGTATATATTCTGTCGTCGTTGCGATGG # Right flank : TTAGTCTACTTCTTTTAAAGGTTGAGCACTTGAAGTCTACAATGTTAGTAATCAATTGATTTTCAAGACGGCTGATGCAGTAGATAAAAACTATACTCTTATAATGAATTGTGGTCAAGTATTTAAAATCATGAAATACTAACCATAAATTGTATTGGTTATTTTAGGCCTTTACAAATCATAATAATAGAACGCTTTTTTTATTTCTCTCGAATTAACTGCATTGTAAACTAAATTATCGTAAATCATAGTATTTAGAAATCAGGAGATTTCTAATGATCTGTAGGACACGAATGAAGCTAACGCTTAACATTCGTGCCAGTGGGCTTTCTACTCTATTTATTGGGTAGTGCTTCCCCGGCCTTGAAGGGAAAAGTGTTAAGAATTTCATGTATTGAGCTGTTAAAAATGATTTTCCTGTTTGAGCTTTAGCGAGTTTAAAATCATTTAGACGAGAGGAATGGAATTTAGCTTTTGACTTCAAAGCCTTGAATTTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACAGCAACCAATGTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 2861-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABANE010000067.1 Flammeovirga aprica JL-4 strain ATCC 23126 Scaffold67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2860 30 100.0 36 .............................. TTTACCCAATTCTTTTGATATTTCTAGGGATGTATA 2794 30 100.0 36 .............................. ACATAGTAAATGTACTGAGTAAAAAAAGAGTTAAAC 2728 30 100.0 36 .............................. GTAACTCTTAACCCCTCACTTGTAAATGGTGGCGTA 2662 30 100.0 35 .............................. TAAGTTGTTTTGAGTACTTTAAGTCACTTGCAATA 2597 30 100.0 35 .............................. GTTAGTGCAAACAATAACATTGATCCAATGAGCAA 2532 30 100.0 36 .............................. AGAAACCAAGGAAACAATTTTAAAAAAGATTAGCGA 2466 30 100.0 37 .............................. GTTTTTCCTCAACTGGTTTTTTATTCCACTTGTTAGG 2399 30 100.0 35 .............................. AACGTTTCCAAAAATACCTCTCAATCTTCTATATG 2334 30 100.0 37 .............................. AAAGGTACATTGCTATCTGGATCAATAGTTTCTAACA 2267 30 100.0 34 .............................. TTGCCTCATTAATGATAAGCAAATCAGACTCTAA 2203 30 100.0 36 .............................. ATATTCACGTTCGGCGTTATGGTCTACCTTAAAAGG 2137 30 100.0 36 .............................. GAAAGTCAGGTGCTTTTTTTATTTATAAAAAGAGCA 2071 30 100.0 36 .............................. GTAAGCACACTGCTCTGGGCAACTAACTAAAGAATC 2005 30 100.0 36 .............................. AGAATATGGCAGAATAGGTAAATATGATATTGAACT 1939 30 100.0 35 .............................. TGGATACGTGACGGTTGGATTACAGAACACCCTTC 1874 30 100.0 36 .............................. GTGAAATCTTCAGTCTCTGCAGAAACATCAGAAGTG 1808 30 100.0 36 .............................. ACGAATGAACCACTTATACCAATCTTCGCCGTTAAA 1742 30 100.0 36 .............................. GCTCAGTTAATGCGTAGGTCAATTGCTTTTGATCCA 1676 30 100.0 36 .............................. GAAGTTGAGTTTGTTGATGTTTTATTGGAAAATGTA 1610 30 100.0 37 .............................. TCCATTAGATGACTCTCCCTCTATTTTTATTTCTTTA 1543 30 100.0 36 .............................. TTCTTGAATTCAAACATTTCAAAAGAAATATCTAAC 1477 30 100.0 37 .............................. AATGAATTTGCTACCGCTTGCGTTTCGCGTAGTTCGT 1410 30 100.0 37 .............................. AATGAATTTGCTACCGCTTGCGTTTCGCGTAGTTCGT 1343 30 100.0 35 .............................. ATACCCACGATAGAACAAGATATACAGACACTCTT 1278 30 100.0 37 .............................. AGAAGGATGTTGAGTTATCCAACCGTCCCTAATCCAA 1211 30 100.0 36 .............................. ATAGTTTCCACCGCCGGAAACGATAAAGAGGCACCA 1145 30 100.0 35 .............................. GAATCATTTATATCAATTTCAATAATATCTGCAAT 1080 30 100.0 37 .............................. ACCCCTGTTTTGGTTAGATGTAGAGAAACTTCCGCTC 1013 30 100.0 36 .............................. TAGTTTTGATACTTTAGTCAAAGATGCATTTGCACG 947 30 100.0 35 .............................. GCCACTAAGGAACATTGGATATATAAACGTTTCTT 882 30 100.0 36 .............................. ACTCTTATTTCGTTAGAGACTAGATATAAATACATT 816 30 100.0 35 .............................. GCCCCAAATGCCGTGAGAAGTATTTGAAAGAGGGA 751 30 96.7 36 ......................G....... GCCACTACTTCAACAGATACTCTTGGAACAGAATCA 685 30 83.3 0 .....A..................A.ATT. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.4 36 CTTCTTATTATGGCATGTTGCCATTACGAT # Left flank : TGGTGGTAACTAAAAGTAAGATTAAAGATGTATATAATATTGTGTTATGATATTGATGTAAAAAGAGTTGGTAAGGTATTAAAGACCTGTCGTAGGTATTTGCATTGGGTGCAAAATTCTGTTCTAGAAGGGGAACTGACAGGTCTGGAGTATCAGCAATTGAAAGACGAATTGAATGATATTATAGCCAATAATGATAATGTAAGGGTATATTCAGTTCGGGCTGAGAAGTGGATGAAGACTGAAATTCTGGGTGATTCACCTGTAAATACCTCTTCTTTTTTATAACCTTGGGTTGTCGACCTCCCAAGAATTGTTCTTTGACATTCTCTGACTATATAAAAAATATAGTTTTTGTGCATTTCGGATATGTTCTACCCGGTTGTCGAAGGTAGGGGGTAATCTTATTATTTTGGGTCGACAATATTAGGAATGGAAATACTAGTTATTAATGTAGGATTAAAGCTTATATGAGCTGTTTTTTTCTTACTTTTGTACGG # Right flank : AAACAAACCTCCACCGCAAGGCCGTGGAGGTTTTGTGATTACTGTGAATTTTTACTCTTATTCATCTGACCTTATATCTTTGAGTCTTTAATCTTTAATTCCCTCCTCAAGTAATTCTCCATCTTGACCCAAGTCTTTTGAATACGGATCTGCTTTTTGATCATTGCAAAGCAGTTTTGCATCATGGTGTTGTAGACTTGCGGATCTTGGTTAGCCTCCTTCCAGAATTTGATGGAGAGTTCCTGGTAGAAATCACTGTAGCGTTGCTTGGTTTGGCAAAATGCTTTGAACTCTTGTAAGGTGTTGATTTTGAGTAGGGGGTTACTTTTTGAAGTCGCTTTCTTTTGAGCTGTATGAGCCGATTGGAAGATCATTGAGGGATATTCTCTAATACGGTAAGAAAGTGCGTCCTGCCAAGTGTGTGAGGTTTTAAACTCCTCTTCTTTATTATTGTAGTACGAGATAAAATCTTTGACCTTCTCTTTGTCGATTTTACGGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTATTATGGCATGTTGCCATTACGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 35053-35479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABANE010000078.1 Flammeovirga aprica JL-4 strain ATCC 23126 Scaffold78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =================================== ================== 35053 46 91.3 28 ....A.G..........G.T.......................... AGTCACGAATATGTCTTTAATGTTTGTA 35127 46 91.3 29 ....A.G..........G.T.......................... CGTTAGTATTATGAGTTGGATGTTCCAAG T [35128] 35203 46 93.5 29 ............................C.G.........T..... GGTCACGGATATGCGTTCTATGTTTTATG 35278 46 100.0 35 .............................................. CGTTAAGGGTGTGAATATGAATTGGATGTTCAATA 35359 46 100.0 29 .............................................. CATAACAGAGATGTCTTATATGTTTTATG 35434 46 95.7 0 ...................A..........G............... | ========== ====== ====== ====== ============================================== =================================== ================== 6 46 95.3 30 GAGCGACTTCCTTTAATAGCGATTTAAGTAATTGGGATGTCTCTTC # Left flank : TTGGAGTGCATTACCCGTATTAACAAATGGCGTAAACTTAGGTGTATCGGTGGAGTACTGTGAGGCATCAGCAGAAAGACAGTCATTGATTGATAACTATGGCTGGATAATCAATGATGGTGGTTTTTTCTGTGAAGATGATATTTCAGCAGAAGATTTTGTCATTGTAGTTGATGGAAGCACAACCGAAATAAATTTTCCTTCAGTGAGTACAGCATCATCCTTTGATATTGATTGGGAAAATAATGACAATTGGGAAACAATTACAACCAATGGGACTTTATCACATTCCTATACAACTACTCCCGATACAATACGTATCAAAGGCGATTTAAATCACTTTGCAGCCCCTAAGAGTATTATTGATGTAGTGCAATGGGGATCAACTCATTTTACTTCTATGTCATCATCGTTTTATGAATGCAATAAAATAGAAGAATTCACAGCCACAGACGTCCCTGATTTATCTTCCGTCACGGATATGAACACTATGTTTCGAG # Right flank : CCGTAACGGATATGTCTTATATGTTTATAGACAGTGGGTTATTAACGGACAATTATGATCTCATATTAAAAGGATGGAGTGCATTACCGAAATTAGAAGATGGAGTACAATTAGGTGTATCAGCGGGGTATTGTGATGCAGAAGCAGAGAGACAGTACTTGATAAATCACTACAATTGGATTATCAATGATTTAGCAAATCACTGCTCTTCTGCAAATGCTCGATCAATCCTGAATTCAGAAACTGTAAAAGGCGTATCTGGTTCGTCTATTTCAGATTTGGCTGGAGAAATAGAATGGAAATTGTATGATTTTAGTGGTCAACTAATTGATCGAGGATCACTCACTCTTCAAAATGGTGAATTATTCAGATGGCAGAATCTACAAACCCAGTATCAAAAAGCAGGTATCTTAAGGGTTTTTGATCGTAATGGAAATGTGTCTGTGGTCAAATTTATCAGAGAGTAAACTTTTATTCTTCCTTAAAGTGATTAAATAGAG # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACTTCCTTTAATAGCGATTTAAGTAATTGGGATGTCTCTTC # Alternate repeat : GAGCAAGTTCCTTTAATGGTGATTTAAGTAATTGGGATGTCTCTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //