Array 1 122345-123473 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOW01000003.1 Fusobacterium varium strain TM07-10 TM07-10.Scaf3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 122345 29 100.0 35 ............................. ATGCTTTCTGGGACTATTATTTCTAAAAGTCCCAG 122409 29 100.0 38 ............................. TTTGGTGATACATTTATGGCAGAACACACAGTGTATCT 122476 29 100.0 35 ............................. AAATATGATAGGGTGTGAAACTGAATATGCAAAGA 122540 29 100.0 35 ............................. TGTATACTGATGATTTTGAAATATATTGTGGTTTA 122604 29 100.0 35 ............................. ACTAAATTCGTAACTTTTTTTACAAACTTTACTTC 122668 29 100.0 35 ............................. CTGGAAATAGTTATTCCTATTTTCCTAAGAGTATT 122732 29 100.0 36 ............................. CCTATAATCCCTTTTTCTATAATACAATTCATTACT 122797 29 100.0 37 ............................. ATGATAGCTTCCTTTTCTTTAGATGATGTTTCCCTTA 122863 29 100.0 37 ............................. AAGAGAAACAAAAGATGTTTCAAAATATAAAAATCTT 122929 29 100.0 35 ............................. CAAGAGGAGAATTAGGAGATGGAGAAATAAGCAGT 122993 29 100.0 36 ............................. AAATAAAAGATGATGGAATTGGAAAAGCGGATGTTT 123058 29 100.0 37 ............................. CTTGGTCAAGTTCAGAAATTCCAAGTCCTTCTGCTAA 123124 29 96.6 36 ...............A............. AAGTAACAGTCAAGGTCGATTGTATCTGTACTGCAT 123189 29 96.6 36 ...............A............. TACACTACAACAAAATCAAATTTTTTTTCAGGAATG 123254 29 96.6 36 ...............A............. TCCTTCCCACCAAATATATAATAATAATTAGTGGTT 123319 29 100.0 34 ............................. ACCTCTAGTTGATTCGATATATCAATTGCTCCAA 123382 29 79.3 34 A.......TC....GAT............ ATACTTTTCCATCAAATTCTTTCTCAGCAGTAAG 123445 29 79.3 0 A.......TC....GAT............ | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 97.1 36 CTTGAATAGTAACTTGGAAGTTTTTAAAT # Left flank : GAATTGTATTCTCCCTTTTCTCTCATCTCTCTAAAAGTAGTTATTCCTATTATTGGTTTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTCTAGCGAAAGTTTTTACAATACAGAATTGAAAAATAATCTCAATATATATTTTCACATATAGCTCAATTTTGAAATATTTCATATTATTTTAATAAAAACAAACAAATTTTTCTAAACTTTTTAAATTTTTATTAATATAGTTAGGCAATTACAATATAAGAATTTTGTTATATAAAAAATAAATTACTTGTATATTCCTACAACATTATAATTTTTATTTTCCAAGTTAAAAATTGTATTTTTTACAATATCATTCTTTAAGATTATTTATTTCAACATCAGTAATTTATAGTATGTTTGTTGGAATTTTTTCACTTAATATGTTATAATTTGTACATTAGCAAGCAATAAAATATTAAGAAAGTTTAAATTTATGACC # Right flank : TTCTTCTAAAAGAAAATTCAGAACTTTCAAGAGTTGTAATTGAATATCAACTCATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGCTATATCTTCAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATGTTAATTATTTATTATTAATTACTTATTGAATAAAATATCAATCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACTGAAATTAATAGATTATAAATACAATGCTGAAGCACATCTACATCTTTTAGTAATTCATCATATTCTGAATCTATCCTTTCCTTATTACTATGGTTGTGAATGGCTGTACAGATTATATCAATTTCTGTAGAAGTTGCCACCTGTAATTTTCTAATATTTCACGAGCCATAATTGCTCCTTTTTGTCCATGATCTTTTGAATATTCAAATTTATAAGTATATATATCATGTAACATTCCAGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAATAGTAACTTGGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 148071-147200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOW01000002.1 Fusobacterium varium strain TM07-10 TM07-10.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 148070 29 100.0 35 ............................. TTAGAAGATTATAACTTAGACTATTCTGTTGATTA 148006 29 100.0 36 ............................. GAAATAATAAATTCGTAGAGTCTGTTCATTAAAAAT 147941 29 100.0 36 ............................. TTAAATTCCTCCTAGAAGTTTTATTGAAATTATAAC 147876 29 100.0 35 ............................. TTATAATAATAGTTTTCCCGCCTTCTTCAAGTCTT 147812 29 100.0 37 ............................. TGTATGAACACAAGAAAGGAAATAGTCTGAATGAAAT 147746 29 100.0 37 ............................. AGAGGTGATCCCTCATTTCCTGCTGATTTTGCGTATC 147680 29 100.0 35 ............................. CTCCATACAATAAGTTCTTTTCCTGCTACTGCTCT 147616 29 100.0 37 ............................. AAGATAGCAGCAAGTATGGTTAAAATTAGTTTTCCCA 147550 29 100.0 35 ............................. GCTAGATATAAATGGTATGTGCTTTAAAGGTGTAA 147486 29 100.0 34 ............................. TTGTTAGCAGCAGTACAAAAAAATTATATAGAGA 147423 29 100.0 35 ............................. ATACAAAAGTTTATGAAGAACAATTAAAAATAAAT 147359 29 100.0 36 ............................. TTGAACCTCTATATTCTCCTAATTCTTGTTCTTTTG 147294 29 100.0 37 ............................. AAAGAAGATTTAGAGTGGGCTCAAGAAAAGTTTTTAA 147228 29 89.7 0 ..............C....T.C....... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 99.3 36 GTTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : GAAAATAAAGAATTTATTCCATTTTATATGAAGGAAAAGATGTAAATGAAAGGTAAAAACTATAACTATGTATTTCTTTTTTATGATATAAATGAAAAAAGAGTAAATAAAGTTTTTAAAATTTGTAAGAAGTATTTAAGTCACCACCAAAGATCTGTATTTCGTGGAGAAATAGCACCTAGCAATTTAATAAAAATGCGATTAGAATTAAAAGATGTTATTGATAAAAAGGAAGATTTTATAAGCATTGTAAAATTGATAAGTGAGCATTATTTCGATGAAGAGATAATAGGAACGCCTTGGAAAGATGATGAAAATATATTTATATGATTTCCAAGTCCAAAAGCTAATAATTTTATCAAATAATTATTTTAAAAGGGATTGAGAAGAAAAAATTTATTTGATAAAAATTCTAGTAAGCTTGGAAAAATAGAAAGAAAATCCTTATAAAATCATAGTTGAAGATATTAATTAATAATAACGAGCTTGATTTGATGAGT # Right flank : CTAGAATTTGTAATTACTCAAACAATTACAAGATTAGATAGAATATCAACTAAAAGTTTTAAACCTTCATGAAATTAAATATAAAAAACAGGCTAAGAATTTTTCAGCCTGTTGTTATGATATTAGCAGTTCCTAAAAATTGATTTTTAAAGAATAAGTATAAAATATCAGTATCTAAAGGATTGTATTTAACAATAACTTTTTTTCCTTCCAATGTGGTTAAAAAATTATTTGTATAGATAAAATTATTAAATCTTAAAGAAGACTTACTTATTTTTCTGCTGGCTTCCTGAAGAAAGACATCAAATTCACGAACATTTGAAATATTTTCTACCATTCCATATTTGAGTGTAAAGTCATATTTTTGATTATCTAAATAGATATATGAATCAAGAAAACTTTTCAAATTCTGATATGAAAGATTTTTATTATTTTGGTAATAAAATTTTTCTATATCTTCTTCTAGAAAAGAGATAAACTTTTTAATTTCTTCATTCTCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 157029-158483 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOW01000002.1 Fusobacterium varium strain TM07-10 TM07-10.Scaf2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 157029 29 93.1 36 ...........T.T............... CTCACTATTTTGTAGAGGATAGAACTCAAGATACAG 157094 29 93.1 36 ...........T.T............... CTATAAGCAAGCAGGATTTTTTCGTTAATGAAGGGC 157159 29 93.1 37 ...........T.T............... TTTGGGTATTAGAAGCAAAAATATTTCCATATATTAT 157225 29 93.1 35 ...........T.T............... TGGACTTGACAAAGTTATTGAATGGAAAAGCAAGG 157289 29 93.1 35 ...........T.T............... ATAGAATTTCTAGAAAATTTAAAGTTATTGGAATC 157353 29 93.1 36 ...........T.T............... ATCATTTCTTTGTGGTTTATCCTCTCTAATAATTGT 157418 29 93.1 37 ...........T.T............... CTGGTTCTGGAAAGCTTACAGAAACGGCATGGAACTT 157484 29 100.0 36 ............................. GTGAATCTCCCCGCCTCATGTATATATTATACCATA 157549 29 100.0 37 ............................. CAGTTGTTTACTTAACAAGATAAGAGAGTAAGGGGAG 157615 29 100.0 36 ............................. AGTTTGCAAGTCTATAATTGAAATGGTAACCCCAAA 157680 29 100.0 36 ............................. TATACTCCTAATTCCTTAACATAAAATCCTGTTTCC 157745 29 100.0 35 ............................. GAAATGGGAAGAAGATAAACCAGCTACAGTTAAAA 157809 29 100.0 35 ............................. GAAACTTTTTGCGATGTAGAATCTGGTGGTCATGA 157873 29 100.0 36 ............................. TTTTACACTAATATAAAATTTTTCAGCTTCTTCTAT 157938 29 100.0 36 ............................. TGGTAAGGGAACTGGCAAAAAAGGGATGGGTTCTTC 158003 29 100.0 36 ............................. TGTCAGAGTAATAAAACCAGAATATATGTATTGTCA 158068 29 100.0 35 ............................. TCTTCTTTCTCTCTTTCTTTATAATCAACTATAGA 158132 29 100.0 36 ............................. TGGAACTTTAAAGGTAATTGTTAGCAGCAATACAAA 158197 29 100.0 36 ............................. CAATACATATTTCGCAAAACTGGTTCTCCTGTCTCG 158262 29 100.0 35 ............................. TTATCAGAAGACTTTTTATCAGAAGATTTTTTAAG 158326 29 100.0 36 ............................. GTAAACAGGATGATATTATAAATTAGACACTAAAAG 158391 29 100.0 35 ............................. TTTCTGCTTCTGTAAAATAACGATCATCATGTGTA 158455 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 97.9 36 ATTTAAAAACTACCAAGTTACTATTCAAC # Left flank : TTATCAGCCCTTTTAATTCTTTTGTTATATTGTCTTTCAAATATTTCATAAAATGCTCTTTCAATTCCTTAGAAATAGTTCGTATCTGAACTGTATATATTTCTCCAGCATTGTATTTTTGGGCATTGACTTTTACCGGATAGAAAGAATTAAAACAATATTCTTTTACTTTTTTCTCTTTATGATATTTTTTCCAATATTCGCTCTTATCAAAAGTAGAATCTATAAAAGCTGCTATTTTTTCTATAGCACTATGTGATTCTATATCTTCCAATAAAAAAACTTTTAATTCTAAAACCCAACTTTCCATTTCATCCCTCCTTTTTAATACTTAATATTAATTATACCTCATTTTTTAATAAATAATAGTCATTAATTTAAAATTTTTAATTTTTTAAAAGAATTTTTTTATTTAGATTATCATCTCCTATCATTTTAAAATTTTTATTGTAAGTTACTATTCAATAAAATACTTTTTCACCTTCTTCATTATTTAAAGC # Right flank : CCCTCATCAAACTAAACTTCATTTTTTATTTTTTCATCTTTAAACCATAATTTTACCAAGATTTTATCTTTATTTTTCCAAGTTCATCAAAATTTTTATCAAACAACTTTTTCTTTCTCAATTTACTTTGAAATCTAGCTTAGAAAAAATTGTACTATTTTTAACTTGGAAAATTTATTTAGTTTCTAAATCTACTAAATTTATTCCATAAAAAATTCCAAGTGATCCTTTTTTTATGTTAATATTCATACTCTTTTTTCCCAAATACTTATCATAAAACTCCTTTTCTATAAGGAATTTTACCTCTTCTCCATTTACATCAGCAATTAAATAATAAAAATTAATATAATACTTGCTTCCAGGTTTTTTAAAATATCTTTTCTGATCTATAATCATTTTTATAATCTTATATTCTTTTTGCTCTCCTTTACTTCCTATTCTATTTATAAAAAACTTTATTCTCATATAAATATACTTAGCAATAAAACTTCCCAGCCACA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACTACCAAGTTACTATTCAAC # Alternate repeat : ATTTAAAAACTTCTAAGTTACTATTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //