Array 1 57008-58661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFH010000010.1 Intestinimonas butyriciproducens strain J1101653_170612_D4 NODE_10_length_59625_cov_63.0476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 57008 33 100.0 35 ................................. AGACAGAAGGACAATATTTGCGAAGAGGGCATTCA 57076 33 100.0 34 ................................. ATCAATAAGATACAGAACACCGGCATACCCATTC 57143 33 100.0 36 ................................. GGAAGACATAAAGAGCTTGCCAGACATAAGCCCAAT 57212 33 100.0 36 ................................. CACCGGAATTCCAAGTAAGTAAGGAGGCAGTGAAAC 57281 33 100.0 34 ................................. ATCGGTGGTGTGATCGGTATTTTCGGGCGGTTGC 57348 33 100.0 35 ................................. ACGATGAAGGAAGATCGTACGGTCGGTCTTATGAC 57416 33 100.0 34 ................................. ATGACTTAGCCCGTAGTAATGTTTTTGACTGGTT 57483 33 100.0 36 ................................. ACAACGATATTTGTACTCCAAACGATCATAATTCCG 57552 33 100.0 35 ................................. ATAAGGAACAAATTCAACCGGCTTGCCGTACCGAT 57620 33 100.0 35 ................................. GGTGCTGTGTATTGGTTTGTCAAGGTACATCTGGC 57688 33 100.0 34 ................................. CGGTTTTATTTTGGTGTTCGTGAAGTTCAAAAAG 57755 33 100.0 33 ................................. GTAAAAGTCTGCAAGTATACCTAGTTTTTCTAT 57821 33 100.0 36 ................................. TGTAGAATAGACATTCCAACCACGTTTCAGGTAATC 57890 33 100.0 34 ................................. GTCCATATCGTAGGCGGAAGCGCTCTGGCGCTCT 57957 33 100.0 35 ................................. ATGAGCAGGTTTGCCCAGTCCTCCGGGATTTTTTT 58025 33 100.0 34 ................................. GCCAGCTCTTCCGCCTTATTAGGCGGCGGGTCAA 58092 33 100.0 34 ................................. CCGATCAGCACATCGTCATGGTAGTAATACACCG 58159 33 100.0 34 ................................. ATGCTAGATGCCGTCATTGACGAGGATAAGGACC 58226 33 100.0 36 ................................. AAATTTTGCGATCATCGTATCATCTGATACCCTGTA 58295 33 100.0 34 ................................. AAGCTGTCGCTTGTGATGAACATGATCGACAACC 58362 33 100.0 33 ................................. CCAGAAAGACACCCTCACCCTCATTGAGGACGA 58428 33 100.0 34 ................................. GCCGCTGGAGCACCGCCATCACACCGTTGATGTT 58495 33 100.0 34 ................................. ATCCGGGCGGGCCGGAAGATCAGGGAGGCGCAAG 58562 33 100.0 34 ................................. GTTTATAAGCAGGCCGGGGGGGCCGTGGCCACGG 58629 33 81.8 0 ........................A..CTCC.C | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.3 35 GTCGCCCCCCACACGGGGGGCGTGGATTGAAAT # Left flank : ACTTGGACGCTTACCCACCTTTTTTGTGGAAGTGATAGTATGCTGGTTTTAATCACCTATGATGTGAACACCGAGGACGCCGCTGGCCGCAAACGTCTGCGGCAAATCGCGAAGCAGTGCGTCAACTACGGACAGCGGGTGCAGAACTCTGTCTTTGAATGTCTGCTGGATGCGGCCCAGTACCGCATGTTACAGGCAAAGCTGTGTAAGATCATGGACCCGGAAAAGGACAGTCTTCGTTTTTATTACTTGGGAAACCGCTATGAAAACAAGATCGAGCATTTTGGAGTAAAGGCATCCTACAACCCAGAAGATGTATTGATGCTTTAGGTGCGAAACGTAAACGCGCAGAAAATCACCGAGGTCTCGCACCAGATTTTGCAGTATTATCTGTAAGGAGGCAACCTTATTTTTCAAAATCGGATAAGAGTTAGGAGAGGATATTTGTAAGAATTGTCTATTTTTCGCGCGAACAGCTTGAATTTTTAGCTGTTTTTGCT # Right flank : CTTTATACAGTCGCTCACATATGGATAAAACCGCTAAAAAATCCAATGAATCTTTCGTAACAGCATCCTATCCTACTTCTAACAAATTTCTAACAGAACGATAAAAAATGAATATCCAACAGGCCCAATGGTTTTTGAGATTTTATTCCGCATGAAACCCGGAACTCCTTGTGCCACAGCGGTTTTATTGGGTATTACCAGAGACAGCCAAACACCCGTAGGAACATACCATGCCCTCTTCGAGTTCTGCTGTCTCCACCAGAAAAATCCCTGGCGCCGCAAGGCTTTGGGGATTTTTCGTTTTTGGTTAATTTTTAAATGTGACATTTCTTTGTATCAAATGTGTTTCTTTTATGAATTTTAGCACTCCTATATTGACAGTGCTAAAACAGAGGACTATAGTAGAACCGTACCAAGGGAAGGGGACCAGAAAAGGTCTTCTCTGCAGGGCAAAAAGGTAAGACAACGAATGGAGGAATGACTTATGTTGCCCAGCATTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACACGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1924-1226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFH010000090.1 Intestinimonas butyriciproducens strain J1101653_170612_D4 NODE_90_length_9439_cov_62.1874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1923 32 100.0 34 ................................ GCCGCAAGGGCGGCGGAGGACCTTTTTTTCATAC 1857 32 100.0 33 ................................ CCTACTATCTGGCCACCGCGAGGATACTCACCG 1792 32 100.0 36 ................................ CGGGGCTGTAGGTCAGCCTCGGGCGCAAGGTGTGAC 1724 32 100.0 35 ................................ CAGCAGCGTCCCGCCGCCCATGGGTTGGGAGGCCG 1657 32 100.0 35 ................................ ATAAAGCATACGACCAGGACACCTCCAAGAAACAG 1590 32 100.0 34 ................................ TGAGACTCTAATGAATAGACTTGTCCAGCTTGAA 1524 32 100.0 34 ................................ ATTTGGGCCGAGGCGCTGGGCTGATAGGACTGCG C [1520] 1457 32 100.0 35 ................................ TCCTGTTTTGGGGCTTCCGCCGCCCACAGGGGCGG 1390 32 100.0 34 ................................ GTGGAGATCCTGGAGCTATGCCTGGAGGCTGCTG 1324 32 100.0 35 ................................ CGTCTGGAGGGAGACCGGGCCCTCTACGAGGCGGC 1257 31 81.2 0 ...................T-..T....C.CA | C [1246] ========== ====== ====== ====== ================================ ==================================== ================== 11 32 98.3 35 GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT # Left flank : CGCGGGGATCTGGATGGGTATCCGCCGTTCCTGTGGAAGTGAGGATACTATGCTGGTGCTGATCACATATGACGTGAATACGGAGGATGCCGCCGGAAGAAGGCGGTTGCGGTGGGTAGCGAGACAATGTGTGAATTATGGGCAGCGGGTACAGAACTCCGTGTTTGAGTGCGTCCTGGACGCGGCCCAATACCGCCAGGTACAGGCAAAGCTGATACAGATTGCCGATCTGGAGCGGGACAGCCTGCGGTTTTATATGCTGGGCAACAACTACAAAAGCAAGGTGGAGCACTTTGAAATAAAACCGTCCTATGAGGCGGAGGGGGTACTTATGGTGTAGTGCGAGGACGGAGCGTGCAGCCAATTGCAGAGACGTTCGCACCTGCAAAAGTGCAGTGGAGAAAAGAAATTGCAAATGTATGGGCCGCACGAGGGAGAGAAAGTTGAAATTTGTGTGCAAGATCGCCAAAATAGATAGGGGAAGTTTGTGCGATTTTACT # Right flank : CCAAAATGTGGTACGCTGGACAAGAAAAAATACCAGCAGTGAGGAGGAGCCCCAACGATGAGTTTTACCCTTCCTGTCTATCAGCCCCCTGATTTTGCCGCACTTGGTCTGGGGGACGCCCCCGATGTAAAGCTGGTCCCTGCGGAGCGGGACGGCGTGGTACCGGAGCAGTATCACGCCACCACCATGTTCCCCGAGTATTTCCGCCTGAACGGGCGGTGGGTGTTGGCCGAGGAGAGCCGCATGGACTGCGTGGCGGTATGCAGGGATGGGGCCGTCTCCATTGTGGAGTTCCGCAATGTGAAGAAGGGAGATCCGGTTGCCGTGGGCCGCACGGAGGATGGCGGTGAGGGAATTTATGTCCACACCGGCGGCTTTGGAGAGGAGGGCGGCGGTGGGGAGACCTTCTCCTTCCGGCAGGGACGCTCCAGGGAGACCGCTTACTCCATGGACTATGACTCCATTTACGAGCTTTTAAAGTATGAGCGCGACCATGGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.80,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //