Array 1 5964-7253 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_OAAS01000027.1 Neisseria meningitidis strain Neisseria meningitidis isolate R579, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      5964	    36	  94.4	    30	........G...A.......................	TTCTATTATAAAAGCTGCCTGACTTACTCG	
      6030	    36	 100.0	    30	....................................	GGCGGATGGCATACGGCGTGCCTTTTCGGT	
      6096	    36	 100.0	    30	....................................	GAGCATTGACACTATTTGTATGGCGTTAAG	
      6162	    36	 100.0	    30	....................................	CCGTCACTACACGAACTGGCGGACTTCTTG	
      6228	    36	 100.0	    30	....................................	AGCATTTGGGCGGCACGGGCAAAGCCGTCA	
      6294	    36	 100.0	    30	....................................	AATCAGACCGACTTTACAACGAAGGTTTGA	
      6360	    36	 100.0	    30	....................................	CGACAACAAAGCCGTCTATGACCTGACCGA	
      6426	    36	 100.0	    30	....................................	TTGGGAGGTGGAAAACCGAATCCTGCACGA	
      6492	    36	 100.0	    30	....................................	AAGCAAATCATTTTCATAGTCAGCAGCTTC	
      6558	    36	  97.2	    30	......................T.............	ACGTGAGTTTGTCTATGAGTTCGACGGCGT	
      6624	    36	 100.0	    30	....................................	CTTTCACTTCAGTAATGGCTTCGGCATATA	
      6690	    36	 100.0	    30	....................................	TAAATTTTTGATTTTGATTTTTTCTATACA	
      6756	    36	 100.0	    30	....................................	GTGGGAGTTCGTCTATGAATTCGATGGCGT	
      6822	    36	 100.0	    30	....................................	TTTGCTGCCCGACAATGCGCGTCCGCAGAT	
      6888	    36	 100.0	    30	....................................	TGAGAAAGATTTAAGAACTAAGTTCCCATC	
      6954	    36	 100.0	    30	....................................	TTCCAAAGTTTTAATTTATATTATTTTAGT	
      7020	    36	  97.2	    30	............................A.......	CAGAAGATGATAACTGTGCTGGGGGTGCGT	
      7086	    36	 100.0	    30	....................................	ACGCAATAACGGCGAGTTTACGCATCAATG	
      7152	    36	 100.0	    30	....................................	TAACGATTGAAAGTGAGTATGTATTAAGTA	
      7218	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.4	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : NA
//