Array 1 1187414-1186920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1187413 30 100.0 35 .............................. CTGTAAGACTCGGGAGCACCGCCGAGTCTTTGCGA 1187348 30 100.0 38 .............................. TCTTTATCACAGACCATCCAGTTTACGATTTCTTTTAC 1187280 30 100.0 36 .............................. TTGCGTTTTTAATAGTTCTAATCTCTTCCTCGACAT 1187214 30 100.0 36 .............................. GCTACAACCGCCATATCGAGTTCCGTTGCTACCGTT 1187148 30 100.0 38 .............................. AGAAAGCAAGTAAAGCGGCTTGCCGTTGTAATTCCTCC 1187080 30 100.0 36 .............................. AATTGCGTAGAATGGCTCGCCAGTTTGTTTTGCTTT 1187014 30 100.0 35 .............................. AATCAAACCGAAGAAGATTTTGAACTGATTATTGT 1186949 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCCCGTTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATTTTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGAGTGACGGCTCAGGCATTGCTCATTGCCAGTTCCTATCCGTGCTCGCGCAATACGGCGCTGTATGCACTCGAGTATGACTGCCACCCAGATTATGCCGCCCAGGCGGTGTTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCGCAGTATATGCGGCCCGGCTGCTGTTTCCGATTAGCGGATGAAAACGGGGCAAGCTGTCGTCGATCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAAATCCTACAACCAACACGGCTGAACAGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGAAAAAGCTTGATTTTACGCACATGGTTTGGGG # Right flank : TATCTCCCTGCCACAGCTGAACCACTGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGAAGACCGGTGAAAAACGGTGGCTTTCGCGTAATCAGCGTTTTGGGGCGCGAGAGAAGGCCTAGTTTTAAAAGACTTATCCACTTGAGAAAATAGTGTTTTTCGCGGTTTTTTCACTACATCACCACCCTTATAGGAAAAGGACGAATGCGAAATGGCGCATGCCAAAAAACGTGGGAGGGATAAGGAGGAGTTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTCCTTTTCTTTCCCGATGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1196576-1195405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1196575 30 100.0 38 .............................. CAGGCATAATATTAAAAACAACCAATGCAATTGGTTTA 1196507 30 100.0 36 .............................. CTCGTCGAGTTGGCTAAAGCACTTTGAGAAGGAGGA 1196441 30 100.0 37 .............................. TCAGATGTCATCAACGGGGCGCCTAACGTTCCGCATC 1196374 30 100.0 38 .............................. AAATTATAAAAGTAAACGGCTCTGTCACGCATGAACTT 1196306 30 100.0 38 .............................. TCATTTTCATCCGCCAAAAATAGGAGATATTGTCATTG 1196238 30 100.0 37 .............................. CAAAATGGATTTGTTGGTCATTTAGGTGGTTTTGTAA 1196171 30 100.0 37 .............................. AACGAGGGGAGAACCACCGACCATCACGACATCAACG 1196104 30 100.0 38 .............................. AGACAATGTTCGAGCAACTTATCCAGTTCCGACTCTGA 1196036 30 100.0 37 .............................. CTCCCACTTTGATATGGGCGTGAGCAAAACGCTTTTG 1195969 30 100.0 37 .............................. AAATTGCGGTTGAATTTGCCGAACAATCAAGCCGAGC 1195902 30 100.0 34 .............................. CCGAGAGTGTTGGCGGAGGCGCAGCGGGCGGCGC 1195838 30 100.0 36 .............................. CCAAATGGATAGAAAAAGATTTGACAGCAGATAAAT 1195772 30 100.0 39 .............................. TCCAAAACAACCCCAGCAGCGCCATCATCTGCATGAAGT 1195703 30 100.0 40 .............................. ATGGTGTTGATGCATGTTTTGTAAATTTTAAGCTTCCCGG 1195633 30 100.0 37 .............................. CCCGAGAAAGCCTTTTTGTGAGTGGAGTAATAGTTAC 1195566 30 100.0 37 .............................. ATGTGAAGGAATCGGTCCATGAACGCTTTGTCCTGAT 1195499 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCAG 1195434 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCTTTATTCGGCAACGTCCCGCACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGACGACCGCGACGTGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAACATGGAATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAAAGTGGGCACCCGCTCGTGGCGGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : ACTGTGTAGTACGGCACAACTTTTTCTGTCTCCCATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTTACCGATGTCACCGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAACTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTATGTGCAACCATCGTTTCCAGAGCGCATGTTTGTCTATTTCAGCCGTCTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2543299-2544528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2543299 30 100.0 37 .............................. TTGCGGAAGGCGCTCGAAACAGACCGGAAGTGAGCGC 2543366 30 100.0 39 .............................. GGGCGATAGATGATTGTGATAACGTTGGGGCGTATGTGA 2543435 30 100.0 38 .............................. AACGGTTTACCTCTGATGCTTTTCTTTGAAGGAAACGA 2543503 30 100.0 35 .............................. AAAAAGCGTTTAGCCGCCTGAATTAATTCTCTACA 2543568 30 100.0 36 .............................. CTTTTTGCAGATAGAGTAATCGAAAATGACGCTAAA 2543634 30 100.0 36 .............................. TATGTTTGAGAATGTTTTGGTCGTAGAGGAAGGCGG 2543700 30 100.0 39 .............................. AAACAGTTGTTTTTCCGTGACCCATTGAAGCGTCACAAA 2543769 30 100.0 36 .............................. TTTCCAACGATAATAATCTAAACAAAGTAAAACATC 2543835 30 100.0 37 .............................. ATGCGAAAAAATATTTCGAGGCCGACGCTGATCGGCT 2543902 30 100.0 36 .............................. ATTAGTTCTATGCGGTCGTTGTATGAGGGCAAGGTG 2543968 30 100.0 37 .............................. AATCATGCGGTTTAATCGCTGTCGTTTATCGCCAATC 2544035 30 100.0 36 .............................. ATAGGAACAGTCATGCCGGCAATATGACCTGTCGCG 2544101 30 100.0 36 .............................. AAATGCGGGTTTTCCGCCGTTTTCTTTGGTGCCGGA 2544167 30 100.0 35 .............................. CCTTGAGACAATTCTATTTTCTTCATCCTCCTTCT 2544232 30 100.0 34 .............................. ATGCAAAAGTAAATGAAGAAATAAATGTATTGAA 2544296 30 100.0 38 .............................. AAAAAAGACAACCATTTGAAAAATGACGCGTTATTCGC 2544364 30 100.0 36 .............................. ATAGGAACAGTCATGCCGGCAATATGACCTGTCGCG 2544430 30 100.0 39 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCGCCT 2544499 30 93.3 0 .....................A.......G | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATGTTCTTGCATGAGGCCATTCTCCTTTGGTATGGCTAGCCCCGCTTTCGTTATGCAGATGACCCGCCAGGCAGACCATTTTGATGTTGGCCCAAGTTTATCTATCATCGAAGGAATGGAACAGGGATTAAAGCAAGGAATACAGAAAGGAATAAGACGAGGGATGAAAAAAGGGCGTCAAAAAAATCGAGGAAGGGAGGCTCGACGTGGCGAAGAAAATGCTGGGGAAAGGGTACGATATCGACGCGATCCACGCACTGACCGGACTGCCGTTTAAAAAGATCGAACGGATGAAGGAACAAACCTTTCTCCGCAACCCTATATTCCCATTGTCGTCGACCCCCAATCGCGCAAAAACCCCTGGGGATCGACGACAATGTTCCTTTGCTTCAAAATCCTACAACCATCAAGTCCGAATATTATTGACAGAATATTTGAAACGTGATACCCTAGAAACAGCCGAAAGGGGAAAAGCTTGATTTAATGCGCATGGTTTGG # Right flank : GGTTTTGTTGTACCCTTTGCAAAAGATTGATGATCGATTGCGACGCGGAATCTGTTGTCTATGACCGCATGGGCGTGGTGTCGCGTTTGCTTGACCCATTCATAGCGAATTCACTTGATGGAAAGGGGCAACGCTCGATCACGATGCGTGCCTCTTTTTTTCATCATTACTAGTGAAGAGCTTTTTCTGGTCGCTGTGCTTCCCCGTTTGGATTTCGAAACATCAAAACCAAAAAGACCCGCCCGCTTGTCTTGGCAAACGGACAGGCCTTTTCGTCGCGTTTTTCGTTTCCTCTTGCTCGACGCCTTGTCGATTACGCTCTTGCCATGCCGATCGAGGCGTCTGGCGTTTTGTAGGATGAAGCATCGTTGTTTTCGTCTTGATGGTTGTCGCTTGGCGTCGTCGAATGGTCGTCAGCCGATGGTTGTTCATTCGCTGGGTTTTCGTCTGTCGGCGCTGTTTCGTCACTCGGGATCAATTCTTTTTCTTTGCTCGTGGCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3027913-3027680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3027912 36 100.0 30 .................................... TAACTTTTCGGAAGGAATGATACGCCGCGG 3027846 36 100.0 30 .................................... GATCGTGGTGTATTCAATGGCCTTCATTGG 3027780 36 100.0 29 .................................... CGATACCCTGCGCTATTTCTCCGTTTGAT 3027715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : CACTAGAGGGATAATATCAATCTGTTTAAGCTTAAAGGAGAGCTATTTCTTCCTTAAAGATTAACGAAGTCTTTTGGTTTCCTCTAAAATTCTTTTCAGTTCAGCTACTTTCATACGAAAAAACCTTATCTTTCCTAGAGTGATTATGTTTAATATTGAGTAGCAAATAAGGCTTAGGGAATACTCTTTATCCTCATTAATATCGTGAAAAACTTCACTCAAACACTCCCTTGCTAAAATTTATTTTAAGTATAAGGCATACACTCCAATATACATTCTTTCTTTACATAGGATGCTACTGCTCTGCATGTTCTGTGCTTTTTAATCACCAACATACAAGCAAGATATTTTGAAATACTAAACGCCGGAACATTTTTGCATATTTGACTTGGATAAGTACCTTTTGGGCAAATAGCGCTTGCTCTAAAGATGATATTCTCCGCATTATTCTCATTATTTGTATTACTTTGTGTATCTAAAATAGCATCTATTTCGTTTTG # Right flank : ATTAAAGCAATGACATACTACCGATAAGCTATAGGAAGAACAGGTGTCTTCATTCCTCATAGGCACGATAAAAACACAAAACGACCCCGAAGTAGGAATGGGGCATCGTTTCAATCCCTCATAAGGTATGGTAAAAATCCAAAAAGCGTTGCCATATCAAGCTTTCTCCCGCAACCGCAACTTCAGCATAACGCGTCCCGAATATTCTGTCAACCAAGCCCATCCATGATGGCTTTAGAGATTAAGCGATCAAAACCAATGTCGTCGATCCCCCGGGGTTTTTGCACGATTGGGGGTCGACGACAATGTGAGATTCGACGGCCAAGGGCCGCTTACCCTTTCATCCTTTCAATCTTCTCAATCGGCAGTCCGGTCAGTTCGTGGATCGTGTCGACATCGTATCCTTTCGCCAGCATTCTCTTCACCACGTCGAGCTTCCCTTCCTCGATCCCTTCTTGGCGTCCTTGCTTCATCCCTTGCTTCAACCCTTGCTTTAACCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 3039673-3040102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3039673 30 100.0 35 .............................. TCTCGTTTTGTTTACTGTCATGATTTCTTCCATGA 3039738 30 100.0 37 .............................. TGAACGCGAAGCGAAAAGCACAACAAGAGGAGCAAAC 3039805 30 100.0 39 .............................. CTTGTACATATCTTGATTTTTCTCCCTCGATAACTTCGG 3039874 30 100.0 37 .............................. CAATTAATTTATTTTCTTCTTTTACGCAAGGAAAAAC 3039941 30 100.0 39 .............................. CCTTTTTCAATAAAATAGTCCAAGTTTTTCATTTTTTTC 3040010 30 100.0 33 .............................. TTTTTGCTTGCGGCGGTCAAGCCAATCTATGAT 3040073 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 96.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGATGGAAGAAAGAAAACGCAATTTTTTGATCCCGATGATGAGGTGTTCCCCCACTTGATTGAATTGAATTTCCGTCATAAATATGAAGCATACTACGGTGTTCCGCCGACGGAAAGGCTATTGATCGAGCCGATTCATGTTCATCATCGTCATCGTGTGGTGACGATGTTCAAGAATATATATATTACAGGATGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTTGGCATGTTTCGCCTCAAAAGTGGATAAACGAGTCATGGGATTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGGG # Right flank : CCTCTTCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGTGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGGAAAATGTTTGAAATTGTTAAAAATATCCTCCTCTATAATTGAAAAATAGGATA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3049516-3051664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061470.1 Geobacillus zalihae strain SURF-189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3049516 30 100.0 35 .............................. CCAACCATATGGAGACGACCAACGGAACGGATTAG 3049581 30 100.0 35 .............................. TTGGTAAATGTATGAAGTAACTCCACGCCATACAC 3049646 30 100.0 37 .............................. GTCGCTTGATCTCGCCGCGTTCGACGGCCTCCAATTT 3049713 30 100.0 36 .............................. CGGCGTCTGCTGTCGCGGTAGCAGCTTTAAAATCTT 3049779 30 100.0 39 .............................. CAATAACATCACATTCATCAAAGGCAATGAGGAAGAAAT 3049848 30 100.0 36 .............................. ATTTCTTGGACTGTTTCGCATTCGTGAATAGCTTTA 3049914 30 100.0 36 .............................. AGAAAAGACCTAATGACTATACTGAAAAACATATCA 3049980 30 100.0 36 .............................. TTGAGGTTGCATAAAGACACTTTTCCGCAGGTGTTC 3050046 30 100.0 35 .............................. GAAGCATCAAAAAAGGTATTAGTTGGGGGCATGTG 3050111 30 100.0 36 .............................. ATTTAGTTTCTATATCTAATTCTATAATCACTTTTA 3050177 30 100.0 38 .............................. TCAAAAGCAATGGAAAAGAAATTAGAAAATGGAAAAGG 3050245 30 100.0 37 .............................. GTTGCGCTTTCATTGCTTTTTACTTCTAATAAGATAG 3050312 30 100.0 37 .............................. AAAAGAATCACGCCACAAGAAGCAAAGGAAAAACATT 3050379 30 100.0 35 .............................. ACAATATCTACCGCTTTTTCCCAAACTAATTTTTC 3050444 30 100.0 36 .............................. CTGTAAAGTATAGACAACCATTTTCTTCCCCAGTGA 3050510 30 100.0 36 .............................. ATCCGTGCCAACTTAGCCGATATATCTCCGTTTGAG 3050576 30 100.0 36 .............................. TCACCATCTTCCCGCGGTGGCAGGCAGGGTAAAACT 3050642 30 100.0 34 .............................. TCTGCCGGATCATCGTAATTCAATTTTCCGGCAG 3050706 30 100.0 38 .............................. AACAGGAGCGTGGCGTGCCGACCGGGATTGTGAAGCTC 3050774 30 100.0 37 .............................. CCTGCTTCGCCACCGGGCCAAGCTGGAGAAATTCCGC 3050841 30 100.0 35 .............................. CAACAAAGAGTCCGACGACGATACGCTTGAGATCA 3050906 30 100.0 36 .............................. GAAATGCGCAGGATGTTTGGAATAAAGCGGATCAAG 3050972 30 100.0 35 .............................. CGAAGATTACGACAGGCAAGCCGACAACGCTGGCC 3051037 30 100.0 36 .............................. ACTAATTTTGGTTATAAGCATGAAACGCGGCCGATG 3051103 30 100.0 36 .............................. TTGGACAGCTAAATTATGGAATGCTTATCGAATTTT 3051169 30 100.0 36 .............................. TTGGACAGCTAAATTATGGAATGCTTATCGAATTTT 3051235 30 100.0 36 .............................. CAAAGAAACCATGACTTTCAATGACTATATTTCTAT 3051301 30 100.0 35 .............................. ACTAGTCTGACAAATAACATAAGCTCATCATGCTC 3051366 30 100.0 36 .............................. CAAGAAACCAAAGCGCTCGCTCCGAAACGAACGGGT 3051432 30 100.0 39 .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 3051501 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 3051568 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 3051635 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGCGCCCGTCTTGAGCGCCGGAAAATCGAGCAGGAAATGGTGGAGCGGAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAACAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGTATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCATGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //