Array 1 97801-99781 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYC01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1182 BCW_7509_1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97801 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97862 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97923 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 97984 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98045 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98106 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98167 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98228 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98289 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98350 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98411 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98472 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98533 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98594 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98655 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98716 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98777 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98838 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98899 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98960 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99021 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99082 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99143 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99204 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99266 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99327 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99388 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99449 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99510 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99571 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99632 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99693 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99754 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115914-117389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYC01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1182 BCW_7509_1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 115914 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 115975 29 65.5 92 ...................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC 116096 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116158 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116219 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116280 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116341 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116402 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116463 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116524 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116585 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116646 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116707 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116768 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116829 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116891 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116994 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117055 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117116 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117177 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117238 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117299 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117360 29 96.6 0 A............................ | A [117386] ========== ====== ====== ====== ============================= ============================================================================================ ================== 23 29 98.1 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //