Array 1 175884-174552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVQ010000003.1 Listeria seeligeri strain FSL L7-0920 NODE_3_length_398613_cov_43.607408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 175883 29 100.0 36 ............................. AAAATCAAAAGCTAAAGTTATTCTCGCAAGTGCTGC 175818 29 100.0 37 ............................. AAGAATATGTGGGACTCCGTGAAGCAGGAGCGAGTTC 175752 29 100.0 36 ............................. ACAGTAGTTGTGAATGACCAGTTACTGAAATCACGA 175687 29 100.0 35 ............................. GAAGTTATGTGACCTGATTGAGGAATACTACAACG 175623 29 100.0 36 ............................. AACACAAGGTGACAATTTACAAACACAATTCGACAG 175558 29 100.0 36 ............................. ATTCTTCAATCGGAACTCCAAAATATTCGAGTACAA 175493 29 100.0 37 ............................. TGTTGATATTAATACCTAATCCTGACCAGTTCATGAC 175427 29 100.0 38 ............................. TTTTATGAAAAGTTGATTCAAGATACTTTTTCGAATGC 175360 29 100.0 36 ............................. CTAATCAAGCTAATCGAGACTCTCAAAAAGAGGTCA 175295 29 100.0 35 ............................. AAGTCCGAATCAGTGATTTGGTCTTCATACTGCCT 175231 29 100.0 37 ............................. CTCGTTAGTGACTACTTTCTCTCCATTTTTTGCGATA 175165 29 100.0 38 ............................. TAACTCCGTTGCCTTGCTGCTTAGATAATTCCATTCCT 175098 29 100.0 36 ............................. TACACCACCTTTGAAGTGGAAAGTTCCAAGGAAGAC 175033 29 100.0 35 ............................. AATAACTTCTACTCTGTCACCTTTTTTAAATTTCA 174969 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 174904 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 174840 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 174775 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 174710 29 96.6 36 ............................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 174645 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 174580 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGGGAGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATCGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 185370-184496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVQ010000003.1 Listeria seeligeri strain FSL L7-0920 NODE_3_length_398613_cov_43.607408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 185369 29 100.0 37 ............................. CTCCTAACCAATCCAGATTTAATATAGTGCTGATCAC 185303 29 100.0 37 ............................. CTTGGTCGAGGAGATTCAAAAGGATGTTTTTAGAAGT 185237 29 100.0 34 ............................. AAGGCTTTTAGTATCTTGTCAATAAATCCTGTTA 185174 29 100.0 35 ............................. AGGGTTTCAAGGAAGAACACGGAGAAAATATCAAG 185110 29 100.0 35 ............................. AAAAGAAAACAGGCATGGGTTAATAAAAAATATGG 185046 29 100.0 35 ............................. AAGCCAAACAATGCCAGCAACTAACAAGGTAATTC 184982 29 100.0 41 ............................. TTTTTTTAGCAGCATTATCAACATCAGTATAAGAGTCTTCT 184912 29 100.0 35 ............................. CCATATCCTATTGAGACTAGGAGCAAACGCCATTA 184848 29 96.6 35 .......................A..... ACAAGTGGCTTAATATAATACGTTGGTGCTATAGG 184784 29 100.0 36 ............................. TAATCAGAAATTTTATAAAAATTATCGAAAGTTTTA 184719 29 100.0 36 ............................. TCAGCAACCAATCCAAAATGGATTGATAGCATCAGT 184654 29 100.0 37 ............................. GAATTAGTAACACAATTAGATCCAACTTCTATTACCC 184588 29 100.0 34 ............................. CAACAGCAGATGACTGAGTAATCTTTTCGTTCTC 184525 29 86.2 0 ........C....C..A...........G | T [184498] ========== ====== ====== ====== ============================= ========================================= ================== 14 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTCCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 192089-191610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVQ010000003.1 Listeria seeligeri strain FSL L7-0920 NODE_3_length_398613_cov_43.607408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 192088 29 100.0 35 ............................. ACTAAAAAAGAACATATGTACGAAAGGAGCATGAG 192024 29 100.0 34 ............................. AACAGTGACACCCCAATCATCAGCAAGAGCTTTC 191961 29 100.0 37 ............................. AACATTACCGGTTTTTGAACCGCAACGATGAGTTGTT 191895 29 96.6 34 .....................G....... TTAATTATTGAAGCTGGAATCGAACTCCTTTTCG 191832 29 100.0 37 ............................. CAAGTTAGTCGGCTCATTTTAAAATGGTTAGCGAAAC 191766 29 100.0 34 ............................. CATTTCATCCAATTGATTCAATAATAAATTATTC 191703 29 96.6 36 ............................A ACATCGAATTAGATGGATTTATAGTGACCCCTTTTA 191638 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GAGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGATTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //