Array 1 16-733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXP01000030.1 Klebsiella pneumoniae strain 1236_KOXY 410_748_13279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 16 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 77 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 138 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 199 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 260 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 321 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 400 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 461 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 522 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 583 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 644 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 705 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 12 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGATTCAGTGTATG # Right flank : GATCTCGATGAGGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-2054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXP01000215.1 Klebsiella pneumoniae strain 1236_KOXY 1605_94396_1721643_1225_,1066+,569+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 ............................. GCTCAAATCACAGACGAACGTTTGGCAAAAAT 77 29 100.0 32 ............................. TTTTACATCTCCCCCAGGAGACCTTGGGGGAA 138 29 100.0 32 ............................. GCGAGCTAATGCCATACCGCTGTTGTAACGAT 199 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 260 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 321 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 382 29 100.0 32 ............................. GCTGATTTAATTGAGTCGTGGACGCCCCCTGA 443 29 100.0 32 ............................. TTGGCGGCCTGCCGGCGGTTTACGCGGCGGGC 504 29 100.0 32 ............................. GTGTATAGCGAAGTGAAGCAAAAAATGGTTAA 565 29 100.0 32 ............................. CAATCGTAATTTCCAGTCAAGGCGGCTTTACG 626 29 100.0 32 ............................. CGGGGATCGAGGATTTCCGTTTTCACGACCTC 687 29 100.0 32 ............................. GCTACGGTCAGCGCAGGTGATGGCTACCCAGT 748 29 100.0 32 ............................. TGGAGTCTGGTGCATTTGACGGCGCGGTATTA 809 29 100.0 32 ............................. ATCTTCGTCATTGCGATACATACTCACTGCCT 870 29 100.0 32 ............................. CCAGCGGATATGCTCCACGACATGATCAGCGC 931 29 100.0 32 ............................. TAAAATCGATACTTCATTCGCTGCCAATAAGC 992 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 1053 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 1114 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 1175 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 1236 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 1297 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 1358 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 1419 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 1480 29 100.0 32 ............................. CAGCCAGCCATCAGCCGTTGAGTCGATGCTGG 1541 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 1602 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 1663 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 1724 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 1785 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 1846 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1907 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1968 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 2026 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGATTCAGTGTATG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 350-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXP01000062.1 Klebsiella pneumoniae strain 1236_KOXY 887_70659_1326871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 349 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 288 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 227 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 166 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 105 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 44 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GGATCTCGATGAGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //