Array 1 40338-40915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIGK010000031.1 Escherichia fergusonii strain EF30 30-1-p_(paired)_contig_177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40338 29 100.0 32 ............................. TCTGCGGAGTATGAGATCGCGCTCCTCGGATA 40399 29 96.6 32 ................T............ TGGCCGAAGCGCATGAGCGTGGAGGTGCAGGC 40460 29 100.0 32 ............................. ATCCATATTCGCGCGCTGGGTAGCGACGATAA 40521 29 100.0 32 ............................. CCGGTTGTAATTCGCCATTTACTGGGCGTTTT 40582 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 40643 29 100.0 32 ............................. GTGCCGCTCGTATCGTGAGCGTTGTACGGTGT 40704 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 40765 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 40826 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 40887 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56243-57736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIGK010000031.1 Escherichia fergusonii strain EF30 30-1-p_(paired)_contig_177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56243 29 100.0 32 ............................. GTCTCTAGCGCAGATCGTGTTTATTGCCGGGA 56304 29 100.0 32 ............................. GGCGAATAAAATATCGTTTATTTTTATTTTCA 56365 29 100.0 32 ............................. ACGAAAACTGGTCTGAAAAATTCATCGAGCGC 56426 29 100.0 32 ............................. CGGGTCGAGAGATCCTCTCTGGTCACGAGCGC 56487 29 100.0 32 ............................. AGATAGCCATATTTCTGTAACGAATGGCATCA 56548 29 100.0 32 ............................. GCATAGGGAACAGGCCGTTCACCGTTTCGAAA 56609 29 100.0 32 ............................. TATTCAGGCATCCATCACTCATGATGTTATTA 56670 29 100.0 33 ............................. GTTTAACCGAGAAATACATCATGTTTAGCCGAG 56732 29 100.0 32 ............................. TGCTGGATTAGGGTTAGCTTAAAATTCAGTTC 56793 29 100.0 32 ............................. TTTATCAGCGTCACCGATCCTACTTGTGCGGA 56854 29 100.0 32 ............................. GCATTTACCGTGCGATATATGTCGCAAAGTTT 56915 29 100.0 32 ............................. GGGATGTACGGAAGTAAGTTAAATGGTTATCG 56976 29 100.0 32 ............................. GCTTCCTCCACCGGAAGAAGTCCGCCATCTCA 57037 29 100.0 32 ............................. ACCGGAGTGATAGACCGTTTGCTCGATGCCGT 57098 29 100.0 32 ............................. AGTTAAAAAAATCCACTGCATATAATGAGATC 57159 29 100.0 32 ............................. TTGATCCAGTGTGTCAGGGGCTTAACTTTTGC 57220 29 100.0 32 ............................. ACCAGCATAAATTTGGCTATGCCATTGTACGT 57281 29 100.0 32 ............................. ATTTCTTTGTCATTCGGTTTTAAACCGTTTAA 57342 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 57403 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 57464 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 57525 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 57586 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 57647 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 57708 28 79.3 0 .A..........T.........-.CT..C | C [57713] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTACCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //