Array 1 183233-184716 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000002.1 Holdemania massiliensis strain BIOML-A4 scaffold2_size285567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 183233 35 100.0 33 ................................... CAGCAGCAGAAGCAGAAACCCAAGCTCCTACAC 183301 35 100.0 35 ................................... ATTAAATACTTGTCCAGAGCCAGTTGCTATCGCAC 183371 35 100.0 35 ................................... TTTCCATACCATAAATCAATACCTAAAGTTAGACC 183441 35 100.0 36 ................................... GTCAAAACCGATTTTATTGACTAGAGGGTAAGGAAC 183512 35 100.0 33 ................................... AGTATATACATACAATAAATTTGTTGATGTTTC 183580 35 100.0 33 ................................... CGTTGATTGCTCGCAAGGTGCAGGCAAAGCGTG 183648 35 100.0 35 ................................... GTGATAACCACTTTTTGATAGGTATCATAAGCTTT 183718 35 100.0 34 ................................... TACTGTACAGCTTCATTAAGTGTAATTAGGTATG 183787 35 100.0 33 ................................... CGTTATGTGAAGAATAAAAAGGGTATTGTTGTC 183855 35 100.0 33 ................................... GTTAATCTCAGGTGTTTTCGATACTCGCACCAC 183923 35 100.0 34 ................................... GGCGTCGCTTTGTCAATAAGTTCCTGTAGCACGG 183992 35 100.0 35 ................................... GGTTGTTGCTCCTAATTCGATACCAGTATCATTAA 184062 35 100.0 33 ................................... CTCTGCCGGCTGGTCGATGTCATGTGCTGCGAA 184130 35 100.0 33 ................................... TTGCTCTTAAATCCTTCGCCCTTGCCGGAAAAA 184198 35 100.0 34 ................................... TGGCATCTGAAAAACTTTACCGCCGAGTTGAATA 184267 35 100.0 33 ................................... AGAAGCCAAGAAGTCGGATTTTGGATTGATTAT 184335 35 100.0 35 ................................... CATCGTTTGAGCTTGAATCTGTTCAATACGAAGAA 184405 35 100.0 34 ................................... CATAGCGGGCCACGAAAAAAGATATCATAAATGA 184474 35 100.0 34 ................................... ATCATAGATAATTCCAAAATCTTTGTCATATGGG 184543 35 91.4 33 .............TG.A.................. CCACGTTTCTTACTTAATCAATCAAGGCTTTCA 184611 35 88.6 36 .............TG.A......A........... CTTCCTGTGGCTGAACTATCGTCGATGGGGTTATAC 184682 35 94.3 0 .............TG.................... | ========== ====== ====== ====== =================================== ==================================== ================== 22 35 98.8 34 GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Left flank : GGCCTGTAAACCGAATGAAAAAACGGCTAAAACGCTGATCAATTCTATAATGGCACAAATCCAGATCGCTCCCTCAAACCAGCATATACAGGCCATTAGGGGAGCCAGAGGACTCAGTATCAACAGCTTTTTTAACCGTACTGGCCGGCGGCAAAGCCAAGCTGAACTCAACCATACAGAACAGTTCAAAATCGTTCCCAATATTACGGTTACTTCCACATAACTGTTCACGCTTTTCTCCTTTCTCTACGTTCTATGATAGAAAAAGAGCTGAGCATTTTTTGTCGTTTTGCCCACCTGGTCTGTGAAAGTTCATTTCAGATAGTTCCGAATAATATATCAGAGATTTCTAGTGCGAACCTGAAGTGAACATAAAATCCCTGAGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGAGTTGCAAGTAGATTGGTTATTCGCTATTATAAAAGTAAGATAAGAATCACCTAAATATCTATTAGTTTCTTATTCGCT # Right flank : TCAAAGTCCTTTTTCTGTAAATGTAGACCCTTCCAAGTCGCATCGCTCACGCTACAAGGATAAGAAAGAACAAACAAAAAGAGGACTGAAAATCCTCTGTTTTATTTTGTGTGTAACACGCTGATTATGACAAAGGCAGCACAATTAGAATTACACCTCTTAAATTAAAATGAATCTGTATTATCTTTTAATAGAACTTCCTTTCCCCATTTCGTGTTTTGTAATGCTTTAAATATCAGCCAGCCTAACATACCTCCTGCCACATTCATAATCAAATCATCAATATCTGCAGAACGGCCAATGAAATACTGCAAAACTTCTATGAATAAAGAACTTCCTGCAAGGCTTATCAGGCAGATTCCTGCTTTGCGGCATTGAGGTAAACATACAGGAATTAAAAAGCCCAGAGGAACAAACATTGCAATATTCAATAATAATTGCTCGATCATTCGCGCAAATCCCATTTGATAGGTTTCCTGTATCCAAACAAACGGAATAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 228664-230099 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000002.1 Holdemania massiliensis strain BIOML-A4 scaffold2_size285567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 228664 33 100.0 34 ................................. ATAATAATTCATAAATGAACGACTATTCATGATC 228731 33 100.0 33 ................................. ATCTGTGTATGACTTATAATCTTCTGCATATGA 228797 33 100.0 36 ................................. GTATGCATACCATTTACCGCTTTGTAAACATCGACA 228866 33 100.0 35 ................................. ATACCATTCTTAACCCTCATTTTACCATTGACTTT 228934 33 100.0 34 ................................. ATGAAAATCATTGTTGACGATGAAGACTTTTACT 229001 33 100.0 33 ................................. TTGTGTAATTCTGTTGTTAACTGTAAATATTTC 229067 33 100.0 35 ................................. AAGGCTAATACATAATTGTTTTGATCCATCCAAAG 229135 33 100.0 34 ................................. AACAGTCAAGGGTGAAACACGAAAAGAGCAGGCG 229202 33 100.0 34 ................................. ACGTTAAAGGCGGAATCGTTTTAGTCGACACCCC 229269 33 100.0 33 ................................. GGTGCTACAAAGAGGAAAAGGTAAAGGAGGCGG 229335 33 100.0 33 ................................. ATGAATTATGCTGACCTTATCCAAGATTTTGAT 229401 33 100.0 34 ................................. ACTGGTTGCAATGTAAGGACCTGTTTCTAAATTC 229468 33 100.0 34 ................................. TATACCTTTACAGAACAGTACAATGCACAGCATT 229535 33 100.0 34 ................................. GTTCCGGGCAATCCGGTACAGTCGGCGACAAACA 229602 33 100.0 33 ................................. ATTAAGAATGCTGAAAACTTTACCAACCGTTCA 229668 33 100.0 33 ................................. TGCCATAGGACATCGAGCGGATCCAATACCTGC 229734 33 100.0 33 ................................. GCCGCAGCGATCGGTTTAACAGAAACAGGGGAG 229800 33 100.0 36 ................................. TGTTACACGACTTCGTGGTGATGATGATGAGATGGT 229869 33 100.0 33 ................................. CAGTTTGGTAATTGCCAAAGCGTTTTCGCGGCA 229935 33 100.0 33 ................................. GGATTTGCAGTTAAGTTTGTATAAGGAGGGCTG 230001 33 100.0 33 ................................. AATAGCTTATAAATATGTTATCTGCTTTAAATA 230067 33 90.9 0 ................T.............T.G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.6 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : AAGATCAAGAATAAAAGAGCATTTCGCGCTTATGCTGAAAATAAAAGGAGGGAATCCCCAATGCAAAAAAATCTGACTACACTCTGCAAGTTAGCTGCCATTCTGATCGTGATCGCCTCTGTCTTCTATTTTTCTTCTGGAGCGCTGAACCAAACACCAAACTTAAATGTTTCCAATATGCCATTGTCACAAATCTTAATACCTAATTGATTATAATTATGATGACTTTGGATATAATGAAAACATTTAGGTTTTTCTTGAACTAATTAATTATAGAAAACTACTTTATGAGGAATATTAGGAACGATTTTCCATCCTGATAATTCCTCTTTTTCTTTGTATTATGATTCTGGTGCGAACCTGAAGTGAACATAAAATCCCAGGGAGGTTCGCACCGGAATTATGTGAAATATGAGGAAATTGTTGCAAGTAAGTGGAGGATTCGATATTATAAAAGTAAGATAAGAATCATCTATACATCTTTAAGTTTCTTATCAACT # Right flank : GAAAAACAACTTACATATATTCTCCTAGAATCAATCGTCGATTAGGATAGTCAAGTCGCCAGCTGCGCCTTGCTAAAAGATCCGCACCGCACAATCCTGCAACTTCCTGTTTCGTGACAGGATATAACACTCTATTCAATACCGGAACATGATAAAGTATTATCTCTGCAGCCCCGACTGTTAAGCGTAGAGAATCAAGTCGTTTTGCCGGAACTTCTGTCACGCCATCAACACCCATCATCGTTTCCAAATCCATAGGCATTGTGTCTGGCAAACTCTGATAAAGCAGAGATCCGCCACTGGTATCTGTATTTCCGCTGTCAAAACCCCACAACATAATCTGATCATTTGTTTGGACTCGCAGAACTGGCATATTATCCCAACCCACAAACTCATGGATTTCACTTTTCTCGGGTATTGAAGGCCTGACCCTCAATTGTTTCTGAGTTTCATCCCATTGCCAACAGGCATGTTGAAGAACATCCCAACCTAATAATCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 117718-116069 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000009.1 Holdemania massiliensis strain BIOML-A4 scaffold9_size184533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 117717 33 100.0 34 ................................. GTAATCGCTTAATTGAATCATATCGGCCAGGTAT 117650 33 100.0 33 ................................. CGGTAAAGGCGAAACATCCGATATTGGTATCTC 117584 33 100.0 37 ................................. CGGTTTTAGATTTAGAAATGGACACAGCCTTAAGGCC 117514 33 100.0 33 ................................. ATCCATCCACAACACCTGAAGCGGTTGTTTTAA 117448 33 100.0 34 ................................. TTGCAGAAATGGAAAAGCTTTATAACAAAAAACC 117381 33 100.0 32 ................................. ATCTAGAAATGTCAAAGCTGGAAATTGATTAT 117316 33 100.0 35 ................................. GACAGGGGCAATTAAGCAATTGGCTAAATTAATGC 117248 33 100.0 34 ................................. ATCACGATTTACATTTCGCATGAAACCTGTTTCA 117181 33 100.0 36 ................................. GCAAGTCTGCAGACCGGAACCATTCCAGAGCTGCCG 117112 33 100.0 34 ................................. GATCTTTCTCTGCAATTTTTTCCGATTTCTTAAA 117045 33 100.0 34 ................................. TCGGTCTGATCATGAAGTATAAAAAAGCTCTGTG 116978 33 100.0 33 ................................. GATACTATTGAGCCTTATCTTTATCAAGACGTA 116912 33 100.0 35 ................................. GGTTGATTTAAAATCTTGATCATCAAGTTTCACTC 116844 33 100.0 35 ................................. CAGCGATCCGCTAATAATTTTACCGATGGTGTCCC 116776 33 100.0 34 ................................. CCTTTTAACAATGCCTTGAATTTTGCTATCTCCA 116709 33 100.0 36 ................................. CACAGCTTCCAGCTCATAGAGCTTTTCGGACAGATT 116640 33 100.0 34 ................................. AGAAATGATAAAAAAGGCTCATCGGAAGCCGGTT 116573 33 100.0 34 ................................. ACCGGCGCAGTTATCGTGCAGGATGCCGTTGAAG 116506 33 100.0 34 ................................. AAGGTTAACGCCGGTACCGGGATGACGGTTGTTG 116439 33 100.0 34 ................................. TTCAACCATTGTGGATTTACACCCTGACACTAAT 116372 33 100.0 35 ................................. TTCCTCCGCTCCGTAGATACCGTTACGCATAGCGA 116304 33 97.0 34 .............T................... TCGTCCTAATAAAAAGCCTTTTGGATCTTTTAGC 116237 33 97.0 33 .............T................... TCCCCAAGTTTTGGAGCTGCATCTGCTTTCCAG 116171 33 93.9 34 .............T.T................. ATTATCCTAATCCAGTGATATCTCATACAGTCTT 116104 33 84.8 0 ..............A....C....A...T..T. | A,A,C [116075,116082,116086] ========== ====== ====== ====== ================================= ===================================== ================== 25 33 98.9 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAAATAATTTCTGATTCATTATGCGGTCAAATCTGGGCTGGTAAAGCTAGTGTTGTATTTTATTGGTCACTCATAGCTTATCGATGTGAATGGCGATATGGAATACGTGCACATCGTGTAGCTTTAATTGATGTTGGACATGTCGGTCAGAATCTGTATTTGGCCTGTGCAGCTTTGAATTTGGGAGCGTGTGGAATCGCGGCATTTGATGATGCTATTTGTAGTAAGCTTTTTGAGTTAGACGTTAATGAAGAATTTGTTGTTTATACAGCACCAGTTGGCACTGTCAATTCCGATGATATAGAAAAAGAAAAAGAATTTTATCGTTTTGTAGAAGAAGAGGGATTATAAGTGCGAACCTGAGGTGAACATGAAATCCTAGGGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGTATTGCAAGTATATCGATGTTTAGCTACGATAGAGATGCGATAAGAATCATATGAGTACTGTTTAGTTTCTTATTAACT # Right flank : CAATTTTCAGCAAGAAAGCTAAAAAAAAGAACCTTAAAAAATAAGGTTTAAAACAATTTTTCGATTGACCAATCAATACCGCAAATTAAAAATTAGATATTAAAAATCAAATTGCTGATCTATGATCGTAATCACCTAATAATTTTAATACAAAAATAGACTAATATCACAAAAAATCAAAAAGTGGTATGATTTGGGTGCTATTTGAAAACAAAGGCAACAAAAAAGCCCTTAACTAAGGGCTTCATCATCAACTGGTGCCGATACCCAGAATCGACAGACCCGCTTTATACGATTCCGCAAAGCCTTATTTTAAAGGCTTTTTTAATAGTTCATTTCATCATTCGGCATCATTTTACAATAGATTTTAAAAATTTTCGTACACTTTTCGTACACTTTTTCATTTCAAAAAATGTTCAGCTTTTGCAATCACATCGGGATCTATTTTTTTGTTTTTTAGACACTCAGCCAGTTCTTTGATCAGACATATTGCCTGGATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 124410-124780 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000009.1 Holdemania massiliensis strain BIOML-A4 scaffold9_size184533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 124410 33 93.9 35 CG............................... ATGTGATACTGGTATTGAGGTTGATCACCGGCTTG 124480 33 93.9 33 CC............................... TTTTTAGCTTGCGCGTCTGATTTTTTAAGAGAA 124546 33 100.0 35 ................................. TTGTCCAGCCAGTATAACGGAATGCAACTATCAAC 124614 33 100.0 34 ................................. TTTTGCTGCTACCATTGCCTTGTATACTGCCAGC 124681 33 97.0 34 ......G.......................... ATTTGTTTTATCCTCCCATTTCTCGCAGGTATTA 124748 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 97.5 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : CTGATGATTGTCAGCAATTAATTGAAAATCCACAGGCTTTATCGTCAGAAGAAAAACAGCTTCGGCAATTACGCGGACAATTATTACTTGATCAGCAGCCAGCTGCTGAAGGATACGCCGAGAGCGTTCAAAAGGAAATCAATTCATTTATCAAACAAGGATATATTGAAGAACTAGATGGTAAATTAAGCTTAACTAAGGATGGTAAAGGTGCTTTCTGGATCAGCTTATCAAATGAAGCTTATTACTGATGAATAAATAAGTAATGTGTAGGATAGTTACGATTTAATTAAGTGCTGGAATCATGTTCACTCATCTTTAAATAAAAGAATAACGGGTGCGAACCTGAGGTAAACATAGAATCCCTAGGAGGTCCGCACCAGAAATATGTGAAAAAGAAAGATAATGTTGCAAGTAAAAGAATTATTCGTTATGATAGTAGCAAGTTAAGAATCATTTAAATCTCTTTTAGTTTCTTATTAGCTGTCGCATCGCTCACG # Right flank : TGATCGTGGCCATAGCGTCAGAATCGTCCAAATTTTCACATTACTTATGCGACATATCCACTGGAATTTGTAATTCATGCTTGTGATTTGCAGAGTATTCAATTACTTGTAAATGTAAAGAAAGGTAGAAATAATTAGAAAAAGAGGTATAATAAAACTATAGATAATTGTTGTCAGGAGGTGTGTATATGTTTTTAGCACACTGGAATGAATCAAAACAACAAGCACAGTCTTTGCAAAATCATAGTGAAAATGTAGCATGTTTAATGCAAGAAAATTGTTTTTCACTTGGTCTTTCTTCTACAGGGAAACTTATTGGTTTACTTCATGATGTTGGTAAAGCAAATCCGATTTTTCAAACATATATGCTAGAGAATCAAATCGAAAAAAAGGGAAAAATCAACCACGCTGCAGCCGGAGCGCAACTTTTAAAAGAGAAAATAATAGATGCGGAGATTTCGAACAAAGAGATTAATCCAAGCATTAATAAGCTGTTATTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 133077-134514 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000009.1 Holdemania massiliensis strain BIOML-A4 scaffold9_size184533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 133077 33 100.0 33 ................................. GCAATCATAGTCATATTTTCTCGCCAGCATTTC 133143 33 100.0 33 ................................. AAAGTAAAACTTAGAAGCATCTAAAGTAGGCCC 133209 33 100.0 33 ................................. ATTGCCGACGCGTCATTTGCCGTGTTATGAACA 133275 33 100.0 34 ................................. GATTAAGTTATTTCTTGATGAAATTTGGATGGGT 133342 33 100.0 34 ................................. TGCCGTTGTTTAATATCATCATCAAAAACAGCAT 133409 33 100.0 35 ................................. TTTGGCGATTAATTAGAATAATAGCAATTATTTCA 133477 33 100.0 35 ................................. GATTAGCATACCGGGGTGGATGGACATATTGTAAT 133545 33 100.0 35 ................................. TGTACCTTTGTGATATTGGAACTGTTGGTGTCTAC 133613 33 100.0 34 ................................. AAGTGTAGTTTTGAATGATTTTAATAGGAAGATT 133680 33 100.0 34 ................................. CGTCAGTCGATCCTGCCGGCTCACCGCCGCCGTC 133747 33 100.0 33 ................................. CGTTTTCAAACTAAATCCTTTAATATCAACCCA 133813 33 100.0 33 ................................. CAGGAAAAAAAGATCATTCATCAAAAGGGTAGC 133879 33 100.0 33 ................................. TAGGTCAGGATGAGGCAGGCAATCTGTTAAACC 133945 33 100.0 33 ................................. TGCGAGATCCTCAATCAAAAAGGTTTCAGGGCC 134011 33 100.0 35 ................................. GCAGCCCTAAAAAGTACCCATCATGAGGCGGGGAA 134079 33 100.0 35 ................................. ATTGAAGCCCAGATCATAGAACCGGCGGACTAACG 134147 33 100.0 33 ................................. ACCCTTGATACCTTGAGCGCCGGACAAGTCAGT 134213 33 100.0 35 ................................. CGGAGGAGAGCATCACAATATCAACACTCGTAATA 134281 33 100.0 35 ................................. ACTCCTCACCCCAAAAGCGTGGTTTATGGCTTACC 134349 33 100.0 33 ................................. TGCTAATAAAATAAGCTATTTTGCTAATACAAC 134415 33 100.0 34 ................................. GAACTCGCCAAGGCGTTGGGTACATATCTCCAAA 134482 33 93.9 0 .............................GG.. | ========== ====== ====== ====== ================================= =================================== ================== 22 33 99.7 34 GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Left flank : GTGATTTGGATGCCTATCCACCTTTTTTATGGAAGTAGGCAAATTTATGTTAGTGTTGATTACTTATGATGTGAATACACAGACAAAAGCAGGAAGAACAAGACTGCGTAAAGTGGCAAAACAATGTGTAAACTATGGTCAAAGAGTACAGAATTCTGTGTTTGAATGTTCAGTGGATAATGCTAAATTAATTGAAATACAACATATACTGGAGGGCTTGATTGATAAGGAAGTAGATAGTTTAAGATTTTATATTCTTGGAAACAAATATAAAAATAAGGTTATTCATATTGGTGCCAGACCTAGTTTTGATGTAAATGATCCGTTGATTATTTAAGTGGTAGTTTATAAGGTGCGAACCAGAAGTGAACATAAATTCTCTGGGAGGTTCGCACCAGAAATTTGGGTGAAAAAGAATAATATTTAACAAGTGCCTACAAAGAACAGAAAGTAAAGCGGAAATAAGAATCATATTTCAATAGTCTTGTTTCTTATTTGCT # Right flank : TAACTGCTAAATTTTGGATAACCTTAGAATCATAGGGAAGATATGTTTCTTATTTGTAAACAGAAAACTTAATTGCGGAAAAAACTGTGATATACTAAGAACAAAGGAGTGATCCCAATGCAAGCAAAAAATGCACCACGTTATCAACAAATTGCAGCGGATATTGCTGCAAAAATTGCGGGTGGTGAATATAAAATTGGGGATAAAATTTTTGCGCGTTCTTCGTTAGCTTCACAATATCATGTTTCAAGCGAAACCGCCCGGCGTGCCATCTGCGTACTTTGTGATATGAAAATTGTTGAATCCATACAAGGGATAGGCGTTGTGATTCAATCTCCAGAAAATGCCGTAATGTATGTCAGACAATTTGATGAAGAGTATACGATATCGGCAATGAAAGAAGGGTTAATTGAATCACTGAATGAACAAAATTTAAGAAACAACGAAATAAAAAATCAGCTCGAAAGTTTGCTGGACACAGTTACGCGATTTAAGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 174365-173121 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPJ01000009.1 Holdemania massiliensis strain BIOML-A4 scaffold9_size184533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 174364 33 100.0 33 ................................. ATACCGTAACGAACCGATTTCAAAGGCAATGAT 174298 33 100.0 33 ................................. CCCTGCATAATTATTCGGCGTGGCACTGACTTG 174232 33 100.0 34 ................................. GCCGTTACAGGAAGCGACGCTGTTAAAAGACCCG 174165 33 100.0 33 ................................. ACAAGGTATTCGATAAAAGCTTTGACGACTTTA 174099 33 100.0 34 ................................. TGGGTTGAAATTTTTATCGGCTATAATGGCGGGC 174032 33 100.0 35 ................................. ATTAAAAGACGGGGAAAAAGTAGTGATTGATGGCC 173964 33 100.0 35 ................................. CGGTGTGGCTGTGTTTAACCTGCGCAAAGGGGATT 173896 33 100.0 34 ................................. CCATTTGCTCATAATAGGATAATGATTTATCAAG 173829 33 100.0 35 ................................. ATGGCGCTGTTTGCGGATCTGAACGATGGGACGCC 173761 33 100.0 35 ................................. TGTAGAGGGATCAAAGTATTGGTTTAACTGCAATC 173693 33 100.0 33 ................................. AGACCGAGATAATTACAGATCAAACGCATCCGC 173627 33 100.0 35 ................................. GCCAAGCAGTACCTGGCGGCGGGTGGCAACTATTT 173559 33 100.0 34 ................................. ACTTATCGTTCATTGGAACGAATCGCGAAACTTG 173492 33 100.0 35 ................................. AAAAGATCAACAAGCCCAGATATTAAACCGCCTAA 173424 33 100.0 34 ................................. ACCACTTATATACATACGCCACTCTATAGACCAA 173357 33 100.0 34 ................................. TGTTTTGCTTTTTCGGATTCCAAATCAGAGTTAA 173290 33 100.0 34 ................................. AAGTAATGGCGGTTTTTGCGAATTTTATGGTGGC 173223 33 87.9 36 ........A.G..A.T................. AGTGTAAAGAGTGTGGCAACATCAGCACTGAAGTTA 173154 33 75.8 0 ..T..........A..T..T.T..C...A.G.. | T [173134] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 98.1 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GTTCAGCAATTTGAAAACAATCTGATTTATCCCCGAGTTGTAGGAAACTCAGTAGGCCTTCCAGGAATCTGGGTTCTGCTTTCCATCGTGGTGTTCGGCGGTTTATTGGGATTATTTGGCATGTTAATTGCTGTTCCAGCAACAGCCGTACTGTACACTTTATTAGGTGAATTCGTTAATAGCCGGATGCGGAAAAAAGGACAGGTTCTAGATGAGTCAGGCTTACTAAGTGTGAAGTCAAAGGTAAAAGAAGAAGCTTCACCTACTGCTGAGGATGAAATCAATTAAACTTTAAATATTAGAATTTCACTGCAAGGCTTTTAAAAGTCTTGCTTTTTTATACTTTAATCCAGTGCGAACCTGAGGTGAACATGAAATCCCTAGGAGGTTCGCACCGGAAATATGTGAAAAATGAAGAAAGTATTGTAAGTACAACGATGTTTAGTTATGATAGAGATACGATAAGAATCATATGGGTACCTTTTAGTTTCTTATTAACT # Right flank : TGTTCCATTTGTCTCTGTTAATTTACAAATCAGTATTGCTTAGCAGCTAACCAGTTCTTATCTCATTCAAGGATATACATCGAAAAAAGCCTGTCTTCATTTTAATATGAAAACAGGCTTTGCTACTTTTTCCAACTAATCTACATCTTGGTCTGCAACATTCCAAGGACGAATAACACAACCATCTGTTGTCGGTTCCGCAACATACACCTTCGCAGAATGATTCTGATCACTGACAACAAAGGCAAATTTGATATTGGTTCCAACACCCCAGCGGCCATCTTTATCTACACAGATTAAGGAAATCGCCTCAGCTTGTCCACGCTTACGAATCAACTTTTGGGTAAATTCCGCAACTAAAGTTGAGGCCGCCTCTTGGGGCTCCTGCCCCTGCTGCATTCTACGCACTACTTCATAGCTCAGACAGCCTTTCATAATTTCCTCGCCAACCCCCGTCGCTGCCGCGGCTCCAATATCGCTGTCTGCATAGAAACCACTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //