Array 1 256447-257135 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHO01000001.1 Hafnia alvei strain NCTC8535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256447 28 100.0 33 ............................ GTATCGTGCAAGCACAAGCAGCCGGGCATTCAA 256508 28 100.0 32 ............................ TTTTAGGCCAGGTGTGTGGCTAATTATTTTAT 256568 28 100.0 32 ............................ GCAACGAGGAAATGTTTACGCTGTAAGTATGT 256628 28 100.0 32 ............................ ATGCAGAATAATACTATCGTTAATTTCTCAAT 256688 28 100.0 32 ............................ ATCGACAGGTCAGATCTGTGTGGATGGGACAG 256748 28 100.0 32 ............................ GTTTGCAACCTCACCCGCAATGCCTACGGGTT 256808 28 100.0 32 ............................ CTTAACTATGACAAGAACAAATCGCGCTCAGC 256868 28 100.0 32 ............................ ATCGCGACAGACTCCACGGCGGCGCGCATAAC 256928 28 100.0 32 ............................ AGTGACGGCCGTGGGTACAATGCTCAGCGGAA 256988 28 100.0 32 ............................ CGAAATGTCGCCGAGCTATCAGGTTGACCAAA 257048 28 100.0 32 ............................ AATCACGCCGTGGGTGGATGGTGCATATTCAA 257108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : AAATTCAAAGTGTTTGCGTTTGGTATAATTAAAACCGCATAAAATTTAAGCTTTTAAACATGTTATATTCCAAAATTCAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCTCTTATGTATTGAGTGATATTTTGACCACGTCGCCAAAACGGAAATAACGATGTGAACAGCAATGATTTCTCTCCATCAGACCTCAAAACCATTCTGCATTCCAAACGCTCAAATATTTATTATCTCCAATACTGTCGTGTATTAGTTAACGGCGGTCGGGTTGAATATGTGACGGATGAAGGACGCGAATCTCTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGCACCTCGGTGACGCAGGCCGCAATGCGAGAATTTGCCCGTGCGGGCGTATTGGTCGGTTTTTGTGGCGGAGGCGGAACGCCGTTGTTTGCGGCGAACGAGGTAGAGGTGGATGTCTCGTGGTTAGCCCCGCAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 265656-266162 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHO01000001.1 Hafnia alvei strain NCTC8535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 265656 28 100.0 32 ............................ AGTCACTATCAAGCACCCGAGTTTTTGAAGAT 265716 28 100.0 32 ............................ TGGGGTTGCGGTTGAAGCGGCACAAAAAAACA 265776 28 100.0 32 ............................ ATGAGTCAGACTGTTGTAAATTCGATTGTTTC 265836 28 100.0 32 ............................ TGATAATCGAGCCGAGGTGTAAGCGATGTATT 265896 28 100.0 32 ............................ GTTTTCGATGGCTGCTTTATCGAGTAGGTGGT 265956 28 100.0 32 ............................ TTCGTCATCGTAGGCGGCTTCCAGTGCGGGTA 266016 28 100.0 32 ............................ TGAGAGCGGATGCGGCGTACTACTACCGTTTT 266076 28 100.0 32 ............................ GTGTTGCGGCACACGCTGTGCCAGTTCGCGAT 266136 27 82.1 0 ...........C.........CC.-..T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCAGAAAAAGTGGCCTATCGAACGGTTAGCCGTGTGCAGGTAAAAAGCAGCGCGGAGAGGCTACGGCGCAGATCGGTGAAAAAAGGCTGGCTCACCGAAGAACAGGCTCGTCTGCAAATTCTCGATGCCAATGAACAAAAAACCTCGTTACCTTTTATCGTGCTAAAAAGTTTGTCCACAGGGCAAATGTTCCATCTGTTTATTCGTCAGGGCGAACTGCAAACACAGCCAACAGCGGGTAAATTTAGCAGCTATGGCCTAAGCGTAACGGCAACAGTGCCGTGGTTTTAGTTTGTCATCTGCGTTGATATCCCCGCGCTCATCAACGGCGGGGATATGTTCTATCTAACAGTCGTTCAAATCCAGCGAACCCTTTTTCTGTAGGTACGTATAAGTTATTGATTTTTAATATCCGTAACTAATGCACAGAAAAAAGGGTGAAATTCCCAAAAATGAATGAGTAGCTTGATTGGAAAAGGTTTTTAGCTAATTTTCACCA # Right flank : TCATCTTCTGTCCCATTTTCACTATACTTATTTCAGCACTGCACCATTGTTGCAGTATTTGAATTAACTTTTGCAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAAGAGTTGGATAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGTGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTACGTACGGTTGCGCTTTTGCCTGATACCACCGACTTTAGGCGTCCGATTACCGATTGATTATGGACGTGGTTGTCATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGGCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACTAGCCACAGAATGAGATGTTGCTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 357608-357874 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHO01000001.1 Hafnia alvei strain NCTC8535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 357608 28 100.0 32 ............................ AATAAGTATCCAGAAATTTCTTCGGATGGCCA 357668 28 100.0 32 ............................ ATATCTTGAATGGCGCCATAGGTTTTGAAGTT 357728 28 100.0 32 ............................ TGCCGTAATATCGCGGAAAATCCCACGGAACA 357788 28 100.0 32 ............................ ATTTATCATGTACTGCTGATACTGGTACACAA 357848 27 89.3 0 ....................-.C.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTCATCGTTTTGTTTCCGTATCAAATCAAAATGTATGCGGCCACCAAAGACGCTAACCTCGGGTGGCAGCTCAGGCGGGGTTAGCGTTACCGGGACATACGGAAAACCGGTGCTTCAGTCGAAGCCCCCACCTGAGCCACCATTATTCAGAGTGGGTCAAAGCGTGTGGCATTATGTCATAACGCCGACATGTATGTCTGGTCTGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTCGTGATTTCAACAATGAAATGGGCTGGATGCACTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCTAACCCTTTTTTTTCGCCTACCTATAACTCATTGATTTTATATAAGTGTTCATCTGGTACATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AAACTAAACGGCATTACTGCATATTTTTCTATTAATACCCACCATCGTAAACGGCTTCTCTTCAAATAAAAGCAAACGCTTTCCTAATTTATAAATCCCCATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGGTGAGTTTTTCATTTTGTTAACAGCATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTTAACCACTGATTAATACTCTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAATTATTGTATTCCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAACTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //