Array 1 990699-989604 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483458.1 Haemophilus haemolyticus strain NCTC10839 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 990698 37 100.0 31 ..................................... ACAATAGGCGATATACGTTCTGATTTTCTTT 990630 37 100.0 33 ..................................... CCTTGTAGGCATCAAATTCATCAAAACTTGTAG 990560 37 100.0 33 ..................................... TAATAGAAATGGTACTTTTACCGCTACCGCCTT 990490 37 100.0 35 ..................................... CTAACACGGGATCTATAATTGCCGTGTTCTTCTAT 990418 37 100.0 31 ..................................... TAAAAAAGCGATCATTTTTTAATAAATCCGC 990350 37 100.0 33 ..................................... TTGTAAGCACATGTTAACGATTAATGGTCCAGT 990280 37 100.0 37 ..................................... ATCTAGAATCACGGCATTTGTGCCGTTTATTCTGTAA 990206 37 100.0 36 ..................................... ATATACGCATTAGGTTTTAAACTCTTAGTGTTCTTC 990133 37 100.0 33 ..................................... CTCTTACGCCTGTTTTATTAGGCGTAACATCAC 990063 37 100.0 31 ..................................... CGCACGGTCGTGCAATCAATCTCAGGTTTGT 989995 37 100.0 33 ..................................... CCATTATTCTTTTTTCATCTTCGCCCAGGCTTG 989925 37 100.0 35 ..................................... GAAATGTAAAAAGGAAGATTATTTCTTAATAGGCT 989853 37 100.0 34 ..................................... TAACCGTGACGGGTAATCTTTTCAGATGAACCCG 989782 37 97.3 34 ..................................G.. TAGTTGTAAGCATTTTTTTCGTCTGTGTGTTTAA 989711 37 97.3 34 ..................................G.. TAAGCCACCGCTTCTGGCATCTTGTCGCATTGAT 989640 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.3 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : GCTTACTTGTTGTCGCGATTGCTACAGCCATCGCAAGAGCGGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGTATGCGGAGCCGAGAGTCCGCTATGTTTTACATTTATATTGAGATTGACTTAAAGGGGAAAATATATGGAAATTTTAAAAGACTTAACAAAAGAGCATGCGGTTATTGCAGGAATTGCCCTTGTGGCAGGGATGGCATTTAATGCCATGTTGCAGTATGAAAAAATGAAGCAAGAATAGATTGCTGGTATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAAAAATGCTACTGGTATATTAAAAAAACCCTGTTAAAATACACCGCACTTTTGACTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCACAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTTGAACACCCCGCCGCA # Right flank : TAAGTTTTTACTTCTATCTTAAAATTATTGCTAGCTTTGGCATTCCCCAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCCTTGAGGAAAGCAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGTGGGCAAGTTGTAGCTCAAGCATTATCAGCGACAATGCAGGTGGCACCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCCCCAGGAGATAGCCAATATCCGATTATTTACGATGTAGAAACCTTGCGTGAAGGGCGTAATTTTTCTGCATTACGCGTGAAAGCTATTCAACATAAAAATACCATTTGTCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAGCATCAAAATACGATGCAAAATGTTGGCACACCTGAAGACTTTACAGATGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 1004412-1005362 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483458.1 Haemophilus haemolyticus strain NCTC10839 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1004412 36 100.0 33 .................................... AATTTTGTTGATTAAACTTAACATTTTTCATTT 1004481 36 100.0 35 .................................... ATAAGCTGAAGAAGTCATCTGTTACGAATACACGT 1004552 36 100.0 35 .................................... CGGTTGTTTCTTAACATACTTTTGATGATAAATGC 1004623 36 100.0 33 .................................... TTCGAAGCATGTACCAATAGCTCTTTTGGTAAT 1004692 36 100.0 34 .................................... TCAGCAGCTACTTTGAATTGGCTATCTAAACCAA 1004762 36 100.0 32 .................................... ACCTGCATCAAATACTTTGTAACCCTGTAAAT 1004830 36 100.0 34 .................................... TTTTTATCTGGATGGTATTTGATAGCCATTTTTT T [1004841] 1004901 36 100.0 35 .................................... TTACGGTAACCACGTTCAATAGTTTGGCTCATGTT T [1004912] 1004973 36 100.0 35 .................................... TGCATAGACGCATTGCAATGACGAGAAATATCAAA T [1004984] 1005045 36 100.0 34 .................................... TTAAGACCAAGAACATAGTTAGCTTGTGTGGTTA T [1005056] 1005116 36 100.0 32 .................................... TCCATATAACCACAATCAATATAACGCTGATA T [1005127] 1005185 36 100.0 35 .................................... ACGTTGAACAATTGGCTTGAATTCCTCATAAAACT T [1005196] 1005257 36 100.0 32 .................................... ATTTTATAGTTCACTTTATCCTTAACCATTAA T [1005268] 1005326 36 91.7 0 .....................G..........T..G | T [1005337] ========== ====== ====== ====== ==================================== =================================== ================== 14 36 99.4 34 GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGACTACAACGGATTTATCGTAGAATGACAAATTATGCGACCCCTATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGGTTATGTTAATTTTCCATAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGACGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTGGCTGAGTTTTGAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : GGTAGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGTACGCCCTATTATTTTTTAAGAAATATACTAAGTTATCGGCTAAATTTAGCCGCACTTTTATAAATGTTTTACTCTCCGTTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTGCCTAGATAGCCACATACGCGGCGAGTGACAGATACTTTTGTGCTATCATGATTGCCACATTTCGGGCAAACAAAACCTTTACTGGTACATTCAAACTCGCCAGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTGGTGCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAACGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCGCTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //