Array 1 105303-104541 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVD01000005.1 Escherichia coli strain VREC0420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105302 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 105241 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 105180 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 105119 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 105058 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 104997 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 104936 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 104875 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 104814 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 104752 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 104691 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 104630 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 104569 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122312-120819 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVD01000005.1 Escherichia coli strain VREC0420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122311 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 122250 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 122189 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 122128 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 122067 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 122006 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 121945 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 121884 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 121823 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 121762 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 121701 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 121640 29 100.0 32 ............................. AAAATTCTGTGTTCCGACCATTACTTCGGTAA 121579 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 121518 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 121457 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 121396 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 121335 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 121274 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 121213 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 121152 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 121091 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 121030 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 120969 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 120908 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 120847 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTAAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //