Array 1 424208-422078 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWR01000002.1 Ignatzschineria indica strain KCTC 22643 mira_70xPW3339_c2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 424207 28 100.0 32 ............................ ATATAGTTTTCGAGTTGCTCTTTCGTTATTTC 424147 28 100.0 32 ............................ ATATCCTCTTTGCGCGCTTGACTTGTTCTGTC 424087 28 100.0 32 ............................ TCATCGAGGTGATCAGAAGCTGTTTTGGGATC 424027 28 100.0 32 ............................ AAATAACATTTATGCGTAACAAAGATAGATAA 423967 28 100.0 32 ............................ ATCTTTCTTGTGATGTTAGTCGTGTTTTGGAT 423907 28 100.0 32 ............................ CTTTGAGTTGGACTTCGACCACGACATCAATG 423847 28 100.0 33 ............................ AAATTTCTACATTGGATGCATTATTAAGACTCA 423786 28 100.0 32 ............................ GTAATCGTTGTGTCTTCGCCGAGATAATTAAC 423726 28 100.0 32 ............................ AGAGGTATAAACAATGTGGGAATGGTTGGACA 423666 28 100.0 32 ............................ ATTATTCAATAACCCACAATAGTTGATTGGAT 423606 28 100.0 32 ............................ CAGTCAAAATCATCAACATCTGCACACTCGAC 423546 28 100.0 32 ............................ ACTCGGACAGGATGTGAATATCGGCTTTATCG 423486 28 100.0 32 ............................ TAATCGATCAGCATTCCCCAGTTTTGATGTTG 423426 28 100.0 33 ............................ GAAGATCGATGCGCCGATGAATGACGAGTATCG 423365 28 100.0 32 ............................ ATCTTCAATCTTTCAAACGCTTCGTTGATGAG 423305 28 100.0 32 ............................ ACATAATCTATAGTAACTCTTGTAAAACCATC 423245 28 100.0 32 ............................ ATCAATACAATACAATCAAAATGCGGGGTTAG 423185 28 100.0 32 ............................ ACATAGGTTCGCCGACGTACGACAAATATTGA 423125 28 100.0 32 ............................ AATTAATGTGGGTTATTGAATAATGGCACGAT 423065 28 100.0 32 ............................ ACTCGCTCTAATGTTATGTGACATGATCCGCC 423005 28 100.0 32 ............................ AGTATGTTGAAGCCGTTACCTCTCACAATATC 422945 28 100.0 32 ............................ ATTTACTCATGATAGTTAAATTTTTTAGTGGT 422885 28 100.0 32 ............................ AAGAAAGATCTCCATTACGATTAAACCATATC 422825 28 100.0 32 ............................ TAACTTCTCTCTAAACTCTGAAATTTCAAAAA 422765 28 100.0 32 ............................ AATAGCTAATTTAACGTCAATATATGCGCTTA 422705 28 100.0 32 ............................ TAACGCTCTTTGAAGAATCAGAATGGCTTGCC 422645 28 100.0 32 ............................ AATTAGAAATAAACTCACACGTTGAATTTGTC 422585 28 100.0 32 ............................ AAAGATTTTAATAATCACATTACGTTTATTAT 422525 28 100.0 32 ............................ TTTAAAAGATAATTTTCAAAAAGTTATCAACT 422465 28 100.0 32 ............................ TCTTGAGTGCGAATCGCCAAGTTTTTCGGGCT 422405 28 100.0 32 ............................ TCTTGAGTGCGAATCGCCAAGTTTTTCGGGCT 422345 28 100.0 32 ............................ ATTCAAAACATCAACATTTAAGATGTCTTGAG 422285 28 100.0 32 ............................ GAGTCGATACATAATTCTGCTCTCTACTAAAA 422225 28 96.4 32 .......A.................... CAGTTTTGATCTCGTTGTATAGAGATATCCAG 422165 28 100.0 32 ............................ AGATAAGATAGGTTTGGATTTAAATGATAATA 422105 28 82.1 0 ...A..C.TG...C.............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAGCGATTGTCGGATTATGTTCATATTCAATCAATTAAGGAAGTACCTAATAAAATTGAGAGTTATGCGAAATATCAGCGCTATCAGTCTAAAGGGGATGCTCGGTTAGAGAAGGAAAGAAGAGGATATGCTGAACATTACGCTCAACAAAACTCTGTCTCTATCGAAGAAGCGTTAAACAGATATTCTCACTGGGAAAGAAGAGAAGTCAATTTTCCTTATATCCAAATAAAGAGTTTACAATCTGATCAAAACTTTAAACTTTTTATTAAAAAAGAAATTGTTAATGTGGATTCAGATAATAGTTTTAATCAACTCTTTACAACCTATGGTTTATCTGCTGGGGGAGTTGTTCCCGAGTTTTAACCATTATTTTTTGCTCTTTAAAAAATTGCTTATAATTCAATAGGTTATAAAAAAGGGAAAAATCATTGGTATTTTAAGGTAAAATAGCCCTTGTGCCAGATTTTTCCTTTCTTTTTGGATTTTAATCTATT # Right flank : TCATGAATTCCCTTTACAACTTTAAAAAACAGTGGGGAATTATCTCTTAAATCGTTACCTAAAACAGGTTAGGGCAGATAGAAAAAGGCCGTTAATATAACGGCCTTCTCTTTAGGTTTAATCTGATATTAATTAATGATTAATGAATCACCAATTAGAATGGAGCGTCGATATCGACAACGTCTACGAGTTTGATGTTAACGAACTCTTTAAGACCTAAGTCGATCAATTCGCGGCCATAACCTGAACGGCGAATACCACCGAATGGGAGGTCTGCTTTAACCATTGTTGGATGGTTGACGAAAACCATTCCTGTTGAAATTTGATTTGCAACACGACGGCCACGCTCATTATCTGAAGTGAAGACAGATCCACCTAAACCAAATGGTGAGTCATTCGCGATGCGGATTGCATCAGCTTCATCTTCTGCTTTGATAATCATCGATACAGGGCCGAAGAACTCTTGGTAGTATGCAGGATTATCAGGTGTTACATTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 644072-644938 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWR01000002.1 Ignatzschineria indica strain KCTC 22643 mira_70xPW3339_c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 644072 28 100.0 32 ............................ TTCTGATAAGATTCGGCCGCCTTGACCAATAC 644132 28 100.0 32 ............................ TATGTTTCAGAATCACAATTAGATCCGCGTGA 644192 28 100.0 32 ............................ GAGTTGGTGCATTCAAGATGGGTGCAGAAAGT 644252 28 100.0 32 ............................ TTGCTCGAGGAGTACTATTATAGCGTGGAGGG 644312 28 100.0 32 ............................ AAATATGAATTTTGACGGCGCTATCTCTATAT 644372 28 100.0 32 ............................ TGATTTAGTGCGCGTTGTTGAGCGTGCAATTG 644432 28 100.0 32 ............................ CTGCGCAATTGATAGACTTATAGTCAATCTTT 644492 28 100.0 32 ............................ AAATTAAACTTCTATTAATTCTTGCTCTAATT 644552 28 100.0 32 ............................ GTATTCATCTTCCCGAATCTCTTCAAATGTGC 644612 28 100.0 32 ............................ AGCTCATTAATGTGATATTTAGGGGCAAACCA 644672 28 100.0 31 ............................ CAACCGCTACCGCCCGTTTCCGCGTCTGCTT 644731 28 100.0 32 ............................ CGAAAGCCCCTGTCTAAGCCCTTAGAGCATGA 644791 28 96.4 32 .................T.......... TCTTACAAAAGCACTGCGTTATGCTCTTCTAG 644851 28 100.0 32 ............................ AGCTTGGTGTGCCTTGTAGGATTTGAACCTAC 644911 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAACCTATCATTACCCATATCGCCTTAAAACCCACCTCAAGCCTTCGCTTAGAAGGAAAAACTGTGGATATTGACGGCAATGAGACATCAGTCATCACCAAAGGGCGACACGATCCATGTGTCGGTATTCGCGCAACCCCCATCGCAGAAGCGATGTTAGCGATTACCCTGCTCGATCATGCACTACGCCATCGCGGACAGACCGGCCAATAAATATTATCGATCAATGAGCCTCTTGACCTATCGTTCATCATAAATTACGCTTCAATAGAGAGGGAGGTTCTTATCACCACTATTCTTCACAAAAGTAATAAGAACTTCTTTACAGATGGGGATTAATATGATTTCAAGGTATTAATCCTTTTTAACCTTTATTTTATGCTCTTTAAAAATTTAGCAATAAATCAATAAGTTACACAGCATGAGAAAATAATAGGTTTTTAAAGGCAAAAGCGCCTTAAACTTAGACTACTCAGTCCTTTTAAGGCTTAAATCTATA # Right flank : ATATTTCCCCTGGAAAGAATGTGGGGTACTGATCATTGTGGCACATGGAGAGGCTGAAGAAGAACCTCGATGAGCTTTGATGTTATCGGCTTCACCGAGGTTTGCTGCAAAAAACGGCCTTTGGCACAAAATGCTAATTCATGTTAGTTTTTTGCGAAATGATTGGCATATTGTTACAACTGTTTAATAGGTGTTTAAACGTTTATTAAACAGCCGTTTAAAAGATTAGGCACTTTCAACTTTAAACAGTTAACTATTAAAAAATGATAGGTTTTAATAGTTCAAGCAAAAACACTTCAGAGCTGTTGCAATGACAGCCTTTGAAGTGTTTTGTTTTTATAGAGAGGTTGAAAGTGGGTTGTAGTTGTTATTTGTAGGCTACTTTAAAGTTACGGCACATTACGACCATGCCAAACAACTCTACCAATAGCACCAAAATCGTTTGGTTGATTGCTTAGATCTATCTCAAAGGGTCTATAGACATTATTGGTGCTTGAGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //