Array 1 303237-302406 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEPN01000002.1 Haemophilus sputorum strain C2002001239 C2002001239_S4_ctg_1387, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
    303236	    32	 100.0	    34	................................	GGGATATGCTCATCAAACGCCTGCATTAAAACTG  	
    303170	    32	 100.0	    34	................................	AAGAGCGAGAAAGTCTGCGTGAATGTTCATTGTT  	
    303104	    32	 100.0	    34	................................	TGGCGCATCAGTGGCAACGGTTGATGTGAAAATC  	
    303038	    32	 100.0	    36	................................	AATTCGTCCATTGCTTACGCATTTCGGGCTGGATAT	
    302970	    32	 100.0	    35	................................	TATGCCGGCACGAATGAGCTAAGCAAGCCGATTGT 	
    302903	    32	 100.0	    35	................................	CCTGATGGCGAAATTAAACGCCCGAAAACATGGCT 	
    302836	    32	 100.0	    35	................................	ATCGTTAAGTTCTCCACGGTTGAGTTTAGATAAGG 	
    302769	    32	 100.0	    34	................................	AACTTTTAAAGTGACAAGTTCTGAACCGTGAAAA  	
    302703	    32	 100.0	    35	................................	CGTCATATAGCGATCACGCGCGTAAGAAGTTACCC 	
    302636	    32	 100.0	    33	................................	TTCAATAACAACAGTTGTGATACGTTTTTGTTG   	
    302571	    32	  96.9	    35	.............A..................	TGGTTAGGCTATTACCATAGCCGCGCCCCTTGCTT 	
    302504	    32	  96.9	    35	.............A..................	TTTATATCTTGCTCGCATCCAATCAATATGGGAAA 	
    302437	    32	  96.9	     0	.............A..................	|                                   	
==========	======	======	======	================================	====================================	==================
        13	    32	  99.3	    35	GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TTTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCGAGCACGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCCGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATATACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATAATTTGTGTAACAACTAAATGTTAGTTATACTTCCTGATACTCCTTATATTTTAAAGGATAGCGAAATACAGTAAATAACTTACTGATTTTTATCATCTTTTTATATAGGGA
# Right flank :  TTGCCGATCAAGAGAAATTAAAAGCAATGTTTGATGCAGCCACCTTCGGGTGGCTATTTTTACTTAATTGATTAAGAAAGGAAAAACTATCTATATTTATTCCCCATACCCTTCACAAATTGCTTGCCAATCGGTTTCATTAAAATGAATACCTAAGCGGGTTTGCTCTTTGTGAAAAGAGCGAAGAAGGCGGTTGAGGTTGTCTTTTTTCCAAGCATCATTGGGGTGAATTTTACATTTGTCAAAATCAATCAGCCAACATTGACCTTTCTCATCAAGCAAGATGTTATGAATATTTAGATCAGTATGGCAAACTTGGCGATCATGCATTGCGCGAATGACCTTTCCAATTTGATGATATTGCGCAAGAGGAAGAGGGGCTTGTTGTAACAATTTACTTAGATCTTGCGTATTAGGAATCTTTTCAATCATAATTTCTGCACGATAATAGCAGTGATGTTTTTCAATTTGAAAAGCAATAGGCTGTGGAACAGGTAGCC

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   GCAGCCGCCTTCGAGCGGCTGTGTGTTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.20,-6.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.14   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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