Array 1 8621-10964 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWN01000029.1 Klebsiella pneumoniae strain 1014809 NODE_29_length_64680_cov_13.090383_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8621 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 8682 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 8743 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 8804 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 8865 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 8926 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 8987 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 9048 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 9109 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 9170 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 9231 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 9292 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 9353 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 9414 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 9475 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 9536 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 9597 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 9658 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 9719 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 9780 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 9841 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 9902 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 9963 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 10024 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 10085 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 10146 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 10207 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 10268 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 10329 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 10390 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 10451 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 10512 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 10573 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 10634 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 10695 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 10756 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 10817 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 10878 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 10936 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25575-27362 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWN01000024.1 Klebsiella pneumoniae strain 1014809 NODE_24_length_74514_cov_11.043513_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25575 28 96.6 32 .....-....................... TCCGGATGATGACATTTCGGGTGATAATCATA 25635 28 96.6 33 .....-....................... GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 25696 28 96.6 32 .....-....................... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 25756 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 25817 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 25878 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 25939 28 89.7 32 .....-......TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 25999 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 26060 28 93.1 32 .....-.......A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 26120 29 100.0 32 ............................. TGAGCTGATCGTTGCCGTAATGCGAAGCGGGA 26181 29 96.6 32 ...............T............. TGACTTTTGTGAAATTTTTTTCTTAAAAAACT 26242 28 82.8 32 ..........A..AC.-T........... TTAATGTTTTGTTAATTTATAAGTGTGGTGAA 26302 29 93.1 32 .........T...C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 26363 28 86.2 32 ...C.-.......AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 26423 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 26484 29 93.1 32 ............TC............... TGACTTTTGATGAGATTTTGTCGATAAAAATT 26545 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 26606 29 86.2 32 .A......T...TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 26667 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 26728 28 93.1 32 .....-.......A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 26788 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 26849 29 96.6 32 .............A............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 26910 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 26971 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 27032 28 89.7 31 .....-.......G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 27091 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 27152 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 27213 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 27274 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 27335 28 86.2 0 ..........A..A........-.....A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 93.7 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAAGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //