Array 1 37-794 **** Predicted by CRISPRDetect 2.4 *** >NC_017461.1 Fervidicoccus fontis Kam940, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 37 24 100.0 37 ........................ TTGGCATATTTACTCCCCTTGCTCAGAATCAAGCATT 98 24 100.0 37 ........................ TTCACAAATTTAGTCACAAATGCGCTAGGAAACAGAA 159 24 100.0 36 ........................ TCAAACCCATGCTTTCTTAGTATTTCTGCTGCTTCT 219 24 100.0 36 ........................ CTCTTGCTAATGCTCTAGCAGTCGATCATAGTAGGC 279 24 100.0 38 ........................ AATAGCAAAATCCACTTATCGCCTACCCAATCTTTAAA 341 24 100.0 37 ........................ ATTTTAAGCGGGATCGTGGCTCCTGTGCTGTCAACCG 402 24 100.0 37 ........................ TTGCCTTTATCGGTAATGTATATTTTCCGGCTTACAT 463 24 100.0 38 ........................ AACCATCCCCAAACATATTGAATACCGCTAAGTATAGC 525 24 100.0 38 ........................ CTTGAGACCCCTTGCCCAACTCCTGCTGAAACACTTAT 587 24 100.0 37 ........................ TATACAGACCATCTCTCACAGCATCAGCTACAGCCAT 648 24 100.0 38 ........................ AGAATTGTAAGTGAAGCAATCGCAACAACAATAACTAA 710 24 100.0 37 ........................ AACTCTTCCATGTATTCAACCAAACTTTCCAAATCCT 771 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 13 24 100.0 37 GAATCTCTCAGATAGAATTGAAAG # Left flank : TCTGAAAAAATCATCACAACAATCAGCTTTTTCCCTG # Right flank : GTTAAAATTAATAGCGAAATTCAAGCGGTGATTCATAAGAACTTCTTCAACACTTCCTCTATAGGGAAACTTTCCTTAGATCTTATCCATGCTTCTTCAACGAAGAACTTTATTGCCATTTTCGCTGCTGTTTTGTCTATCGGAATTGCATCAGAACTCGTGCTGAAGTAGTTCATCATAGACATCGCGGAAGCTAATTGAATTGCCCTCTTCTCCAGTCTCATCGAAAATGGCACAGTCTTTCCTCTCAAGCTTTCAAGAACGAGCTCGGATGCTCTTTCTATTAGGCTGATCATCTCATCGGTGAGCAAGATCTTCTTCTCGTTGAAGATTCCCCTTACCATAGGGTTCTTGGTCTGTATAGCATAAATGAGAGTGAGATGATCTCTGAGCCTTGGGGCAACCATCCTCATCTTACTTTGAAGAGCTCCGAGCATGAGCCTCATCTGGCTCTTCGAGAGCTCGCTGTACTTCTCCTTTGTGAGCCTGTGGAGCCTGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCTCAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 14145-13013 **** Predicted by CRISPRDetect 2.4 *** >NC_017461.1 Fervidicoccus fontis Kam940, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 14144 24 100.0 38 ........................ CTTTGTAACTGCTTCAAATACTTTAGCATTATTTTGTA 14082 24 100.0 39 ........................ GTGAGAGCAACTTGGATAGGCTGAAGGATCCCATGCTGT 14019 24 100.0 37 ........................ TATTACCAAATGCATTTCAGTAAATTCAAACGCATTG 13958 24 100.0 38 ........................ TCCGGCACCATAATTTGATCAACGCTAATTTGAACTAC 13896 24 100.0 36 ........................ GCTCTAGGATCTTTTACTTGGTTTGGGGTTTGGGTT 13836 24 100.0 37 ........................ TCAAGTATGAGCTTAACTTGCTGTGCTATTTCTTCCG 13775 24 100.0 37 ........................ ATTATAAAACCGGGCTGTTCTTCAACAACTTCACCAT 13714 24 100.0 34 ........................ AGGTGAAGAAATTCAATTCATTAAAGCCAGCGTT 13656 24 100.0 36 ........................ CGCCTCAACAAAAATAGCTGGGACAGGGCTTGACTT 13596 24 100.0 36 ........................ TCGGCAGCACGGCTTCGAAGTATTTACCAGCCCACA 13536 24 100.0 37 ........................ ATGTGAATATTGCTTCAAGTGCTGCCACGCTTAACGT 13475 24 100.0 37 ........................ AAAAAGGCAAAAGGCGAAAAAATAAGTATATCGACAT 13414 24 100.0 38 ........................ TGTGATAGTTATGAAGAACCCTAATGCATCAGCTATTT 13352 24 100.0 37 ........................ CTGACCAGCTTGCCGCTTTCACATAATTGCTTGATTT 13291 24 100.0 36 ........................ CTCTCTCTTAGACTAAAAATGTCTTGTAAGCCCACT 13231 24 100.0 48 ........................ TCTCTGTTTCCAATCAAGAGCTTTAGCGTTTCTGAATTAAAGTTATGT 13159 24 100.0 37 ........................ TGGAACTCGTCTTCTTTGAAAACTCTTAACCCGCTTT 13098 24 100.0 38 ........................ ATCTTGTTCAGCCTATCAACATACTTTAATTCTACTAG 13036 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 19 24 100.0 38 GAATCTCTCAGATAGAATTGAAAG # Left flank : GCTCATAGCCGAGCGTTCCTATGAGAACCTGATTGCTTGGAGAGTAGGGAATTATCAGGTCCAAATGTTTCACCAACTATATTCTTCTTCATTTTGAATAAATATAATATTTTACTGAAATTTTATACTCTCTCGCTAAAATCTTTAATATCATTTAGAAACCATAAAATTCTGCTTTTAAAATGCTAGAGCCGAAAAGCACCAAACCTTAATCTAAAATTCATTATTTTTTCCCTTTTTATTTTGGGAAGTATTTAAATCCTTTATAAATAAAAATTTGTGAATGAATTTTATGGATGAAATTTCGCATAGTTGGGAACAAAGCTGATTTTAAACTAAAGGATAAATTAAACATATTTCTATTATATATTTTTTATTACAATTTCCTAGAAAAAATGGGGAAAAATATATCAGATCTTGCAATTTTTGCAATTGGACCGAAAAGTTTTTATTATAATACCAAATTATAAATTATACAAATGAGCTCAAAAAATCGTGCA # Right flank : GTGGCTGGGGTATATGTTTTCGTGATGACTTTATTTCTAAGTAAACCAATAGGTTTATTTTTTAGTTTACCTACTATTATCTTGGTGGTTAGATGAGTGTTTTCAGTCTCAAGCTTAGAAGGGATATCAAGGAGAAGATGAACAGGTATAAGGATAAGGTCAATTGGGCTGAGGAGATAAGGAAATTTATAGAAGAAAAGCTGAGAACGCTGGAAGCCGAGGACAATATTAAAAAAATTGTCGAGGAGCTCTCACAAATACCTATAGAGTCCCCCAGGGGCTCCTCAACTTCTTCTGTGAGGGAGGACCGTGAAAGTCATTGATGCTTCTGTACTAGCTGCATTCATTAGAAAAGAACCTGGGTGGGAAAGACTGGTAGTATTTGTAAAATTATGTACAACTATAGATCTGGCCGTGAAAGAAGTATTGAACACCATATGGAGAGATTATTCGGTTAGAAAAACTATTAGCATAGACCAAGCTGTAAGGTTGCGAGAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCTCAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 3 56195-55133 **** Predicted by CRISPRDetect 2.4 *** >NC_017461.1 Fervidicoccus fontis Kam940, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 56194 24 100.0 36 ........................ ATAGGGCGATCAGCCCCTCGTTTATCTTACCCTCTG 56134 24 100.0 38 ........................ ATGTGAACGCTACTATAGTAAGCTCAAATATAACGCTT 56072 24 100.0 38 ........................ AAGCCATGATCTTTAAGAGTATTGGCCAGCGATAAATT 56010 24 100.0 36 ........................ AAATCCGCTATTTCATCTTGCTTACTTTTGTCTTCG 55950 24 100.0 37 ........................ GACGAGTTCGTTTCGTATATGTCAACGCTGGGGATCC 55889 24 100.0 37 ........................ TTCTCTTAAGTTTTCTATGTCCTCTTCGATTGTTTTT 55828 24 100.0 36 ........................ TTAGTTTCTTCTCGTATAACTCCTGCCAAAGGTAGT 55768 24 100.0 39 ........................ GCAAGTGTGCTTTGTTGTTGTTGTTGCGGTTGCTTAGCT 55705 24 100.0 38 ........................ GCGTTCAGTTGGCTAATAAACGTAATTGCGCCTACCAA 55643 24 100.0 37 ........................ CATTTAGCTGCGAGTTAGTAACGCTGACATTGAGAGT 55582 24 100.0 39 ........................ AAAGGGAAATTAGCCCCGGATTAACGTGGCCCGACTGCT 55519 24 100.0 37 ........................ AGTAGTTGTTTTATTCTTGTGGCAATTAGCAAATTGC 55458 24 100.0 36 ........................ CGATCCCGTCGAATACTGCACAAACCAGCCCGGTTA 55398 24 100.0 37 ........................ AGCGCATTAACAATGTTTTCTATCGCCTGCCTGCGGG 55337 24 100.0 36 ........................ TATTGGTCTCGCGAGGATCCCCCCCATACTGTTCAA 55277 24 100.0 36 ........................ TACATATTATGAAGGGCATGGTAAGGATTGGATATT 55217 24 91.7 37 .......CC............... AATGACTTTTCGAAAAAGAATTGATCATTTTGAAAAA 55156 24 95.8 0 ......A................. | ========== ====== ====== ====== ======================== ======================================= ================== 18 24 99.3 37 GAATCTGTTAGATAGAATTGAAAG # Left flank : GGTAGGTATGATAGCTCCATCCTCTCAAGTCCTCGGGAACAGGATCATTGCTCCTGAGCCAATACAGCCTCTTGGGAACATCCTTCACCAGAGAAAAGAGCATCTGCATCATCGAAACATTATTTAGAATTGCAAATTTTTTTGTATGAAAGTTGAGATAGTAAAAAAATCCCGGAAATACCTGTGAAAAATCATGCTTTTCTGAAGCTGTCTCGCGATTCGTAATTTTTTCCCGAGCTATTTCGGGAAGTATTTAAACCCCTTATAAATGCAAAATTCAGACAAAATGCTATATATAATTTCAACATGTTATTCCATCAAAGCAGAGGGCATTATAAATGAATAACTTATTTGTTAAATTATTATATACTTTTAATTATAATTTCCCAGAAATTTCTGGGAATTGATGGTCCTTTCGCGATTTTTTCGAGCGAGGGCGAAAAGCTTTTATTGATAATACGCCATTATAAATAATAAGAATGAACGCTACAAATAGTGCA # Right flank : AGTACCCAATTCTATCCTATTGTGCAGAAAATTTTATTTCATAAAAATGAAATAAAACTTTTAAAATTAATATATCTAAAAAACAAAAGTTTAAATACAACTTCTTCGTTTGATTATTATAGTGATAAATATGGCCGAAAAGCTCGAACCTTCAGAGTGGTGGGCCCTCAGGAGGGTTGCGACGGCATTGAACCTTCTTATAGAAAATAAGGCCTACAACACTATAGATGTCATTGCTGATTCTCAGAAACCTGAACTGAGAGTAGAATCTCTGTGGAGAGCCCTCAGGATGATAGCGAGCGAAGATCCCAATAGACTTCCTCCACAGAGGGACGTGGAAATCACCATCAGGCTCCTGATGGATGAAAAGAAGGGAAAAATCGCTGGCAGCATTTTGGCAACTCTCTCGCTAACTCATGAGAAAGAAAGCGAAGAAAATAAAGCAGAGGGGGTTGTTGCGTAATGGTATACATATACATTTCAGGAAGAGTTATTGCAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTGTTAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 61768-62836 **** Predicted by CRISPRDetect 2.4 *** >NC_017461.1 Fervidicoccus fontis Kam940, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 61768 24 100.0 38 ........................ TGAGGATGACTACATTGTAGTGCCTCCACAGAGACAGC 61830 24 100.0 37 ........................ TGTCAACTTCAAGCTGAATTACTTGCTGCTGATCGCT 61891 24 100.0 39 ........................ TTTGTGCCACTTTTTGCGATCGGCGCGATTGTGCTAAAT 61954 24 100.0 36 ........................ AAATCCGCTATTTCATCTTGCTTACTTTTGTCTTCG 62014 24 100.0 37 ........................ GACGAGTTCGTTTCGTATATGTCAACGCTGGGGATCC 62075 24 100.0 37 ........................ TTCTCTTAAGTTTTCTATGTCCTCTTCGATTGTTTTT 62136 24 100.0 36 ........................ TTAGTTTCTTCTCGTATAACTCCTGCCAAAGGTAGT 62196 24 100.0 39 ........................ GCAAGTGTGCTTTGTTGTTGTTGTTGCGGTTGCTTAGCT 62259 24 100.0 38 ........................ GCGTTCAGTTGGCTAATAAACGTAATTGCGCCTACCAA 62321 24 100.0 36 ........................ CTCCAATGCCTGGGGCACTAGAGTTATTATTATTAT 62381 24 100.0 36 ........................ TAATAACGAGGCCTTCGTTCTCGAGCTGTTTCAAAT 62441 24 100.0 38 ........................ ACTCCTAGCCCAATATCAATTAATGCAAGTTCTGTAGA 62503 24 100.0 39 ........................ TATAACATGCATCTTATCACCTAAGCTATCATCTTCCTG 62566 24 100.0 37 ........................ GCTTTAGATATCTCGTGTTCCTTCAGATAGTATTTAA 62627 24 100.0 37 ........................ CTTGTTATTTTTCCTTGGCTAACGAGACTGTCTAAGT 62688 24 100.0 38 ........................ TTAGACACGGCGAGACGCAGATAATACCCTGGACCGGA 62750 24 100.0 39 ........................ TATCGTGCATAACGAGTTTAAAGAGTGAGTACCAATCGA 62813 24 95.8 0 .......................A | ========== ====== ====== ====== ======================== ======================================= ================== 18 24 99.8 38 GAATCTGTTAGATAGAATTGAAAG # Left flank : CATCTCTTCCGGTTCCTGCTCCGATGTCAAAATGATCTCCTCGAACTTCTCTCCAGTCGCGATCTCGTATCCGAGCGTCCCCAGGAGAACCTGCCTGCTGGGAGAATAGGGTATGATGAGCTTCATTGAAAGTACCAATATAGTTCTAGTAAAGCCAAATAGTTAAAGTTATATTTCAGAAATTCTTTTTTGAGCCGCGCAAAAGAGTGTGTTTCGCGATTCGCAATATTTCCCGAGCTATTTCGGGAAGTATTTAAACCCCTTATAAATGCAAAATTCAGACAAAATGCTATATATAATTTCAACATGTTATTCCATCAAAGCAGAGGGCATTATAAATGAATAACTTATTTGTTAAATTATTATATACTTTTAATTATAATTTCCCAGAAATTTCTGGGAATTGATGGTCCTTTCGCGATTTTTTCGAGCGAGGGCGAAAAGCTTTTATTGATAATACGCCATTATAAATAATAAGAATGAACGCTACAAATAGTGCA # Right flank : AGCGATTCCGAAAAAGATATATAGTTTATAGCTAAATAGAAGTTTAGGAGAACTGCCTTGAGCGAGAAAAAGTACCATGTAATTGTAACCGTAGGGACAAGCATACTCAGGAACACCTCTTCGGAGGATACGGAAAGAGCCTGCAGCGATCCGAAAAGCCAAAAGTGCCTTGAATTTCTGGTCAAGAAGCTGAATTTTGATCCGAGTAAGGTGAGCGCAGAAGTAAACTCCATGCGAACATATCTGAATGAGAAAGAGCGGAAAATAGCTAGCGTGACTCTTCTGGCGAGCGATACGGATGAGGGGAAAGTGTGCGCGGAGGCCCTCCGAAGCTTCTTCGAAGATCGTGAAATAAAGGCGGAAGTGATGGTCGTAGAAAAGTTAGGTAAAGCCTTCGAAGTGGGTACTTCGAACCTTATGGATGCGATAGCGAAGGCAGTCGCAACTGCAAGAAAGGAGGGGCTCGAAATCATCTTGAACTTGACAGGTGGATATAAGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTGTTAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //