Array 1 8323-9150 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPI01000015.1 Haemophilus haemolyticus strain CCUG 30218 Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8323 32 100.0 34 ................................ TTCTTTATGTTCTGCTGGCACATAAGCTAGCGCA 8389 32 100.0 33 ................................ GCCTAAATCTTTTCTTTTTGCAAATCCATATGC 8454 32 100.0 33 ................................ ACAGTAAATCAGCTTGTCCAACAAAGAAGGTAA 8519 32 100.0 34 ................................ AATGGGTAAAGGTGGCGGTAGTGGCGGTCATACG 8585 32 100.0 34 ................................ ATCATATCCTACTAAGAAACGTTATAGACACTTG 8651 32 100.0 34 ................................ CGATGATTACTATTACCAACTTAATGCTGCTCAG 8717 32 100.0 35 ................................ TTTAGTTTGTATTTGGCCAGCGGAATTTTTGCCAC 8784 32 100.0 37 ................................ TACACCACCTTTGATTTCATTTACAAATTCGTAACCT 8853 32 100.0 34 ................................ CAGTAGAAACAGTTTTCCACCTTGTTACGTTCTA 8919 32 100.0 34 ................................ ACGTTTTTCTTTCAAGAATATTGCGAGAAACACA 8985 32 100.0 33 ................................ TCGCAGTAGGTACTCAAAATTTGCTTTCCAGTG 9050 32 96.9 37 .....................C.......... ATTCAGCAAGGATTGTTTACCGTACGAGTAGGGCGAG 9119 32 75.0 0 .T...........T..AA......A..T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 97.8 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGCATTGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATCTATTTGTATAACGGCGGTATGACCGTTATACTTATTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGAGA # Right flank : TGAGGATGAAAGAAGATAAATGACTATGTCAGTAAATAGATAAATTAATATTTAAATACAAAAGAGCGGTCAAAAATATGATAATTTTTGGACGCTTTTGTTTATACGATTTTAATTTAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACTGTTTCCCAATGTACACCTTGTGCGATTAAATCATCAACAACGGCAACATTATGTGCTTCACGCCAGAATACAAAAATTCTGTTTGCTACAACTTCACCCACATCAGGCACTTGTTGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //