Array 1 949670-946956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066287.1 Peptoniphilus harei strain FDAARGOS_1012 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 949669 29 100.0 32 ............................. ATGACGACATCGAGTTTATACCAGGAGAAAAA 949608 29 100.0 32 ............................. AAATTTGCACCAGTCGGAAGACCTAATCAACA 949547 29 100.0 32 ............................. AGAGACGGCTACAAGTTGATAAAAATCGCTGA 949486 29 100.0 32 ............................. TGCTTTTCGTAGTCATCTGGATAGTAATAAAA 949425 29 100.0 32 ............................. CTGGAGAGAGGCAGTCCTTGAAGATTTAAAGG 949364 29 100.0 32 ............................. AGCAATCCTTTTTATCTTTTTGTGATAAGTCG 949303 29 100.0 32 ............................. TAACATAAACAACCTCACTAAAATTTTATTTG 949242 29 96.6 32 ............................C TATAGACTGGATAAATTTTTCTTCGGTAAGTT 949181 29 100.0 32 ............................. AAGGGAGGACTAAGCCTCCCAAATTATTATGC 949120 29 100.0 32 ............................. TGAGTACTTCGGATTAGAAGAAGAATTTGAAA 949059 29 96.6 32 ............................G GATAGGTTTGTAATATTTTTTTTCGGCAGCTT 948998 29 96.6 32 ............................C AATGAAGCATTTGGAAATTACATGAGCAACAA 948937 29 96.6 32 ............................C AACTCATCTGGAATTAAGGGTGTACAGTTAGC 948876 29 100.0 32 ............................. CGGTCTGCAACTTGGCAATCTCGACTTTTAGC 948815 29 100.0 32 ............................. GAAATTTACACACTTGAATTTCAAATTGATGG 948754 29 96.6 32 ............................C TCTGCCACGGAGTGGGCCAGTGTTTCCTCTTT 948693 29 96.6 32 ............................C TGCAGGGGATAAGATCCCTGATGATGTAATCA 948632 29 100.0 33 ............................. GATTGAACTTGATAAGAAAAAATTTAAAACTAA 948570 29 100.0 32 ............................. GCTTAATTCCCAATCTAGAATTGAGTCTAGTC 948509 29 100.0 32 ............................. GCTTAATTCCCAATCTAGAATTGAGTCTAGTC 948448 29 100.0 32 ............................. GGACATAATCGTGGTAGTTGCAAATGTTGAGA 948387 29 100.0 32 ............................. CTACAATGCTCTCCCTCTTTTAAGTCATCTGA 948326 29 100.0 32 ............................. ATGGTAATTTTACAGTTGAATATAATGCTAAA 948265 29 100.0 32 ............................. CTACTTCTGAACATTATTGGGATATGGTTATG 948204 29 100.0 32 ............................. AGGAACAGCTACAACTGGTAAAGCATAAACTT 948143 29 89.7 32 ..............T..A..........C TTGTTGTGGCTCTCCAGCGACCTCGCCCTTAA 948082 29 93.1 32 ..............T..A........... GATATAAAGGTTAATTTAAAGAATTTATCTAA 948021 29 96.6 32 ..............C.............. TAGCAATAATAAGACCAATTGCTACTGCTGCG 947960 29 93.1 32 ..............C..A........... GAATTGCCCAACATGTAATCAGCCACTGCCAG 947899 29 82.8 32 ..............C..A........GGA GAAGTAATAAGAGTCCCAGGAGCTGTTTCAAG 947838 29 93.1 32 ..............C..A........... GCACCAGATGTAGTATTAATTGATTATAAAGG 947777 29 89.7 32 ............T.T..A........... AGATTATAAAGGCAATAAAAAATTTATAGAGA 947716 29 89.7 32 ............T.T..A........... CATATTAAAGGTGTAGAAAATCAAACTCTTGT 947655 29 93.1 32 ..............T..A........... GTCGACTGGTCCAAGTATTGCATAATCTCGTC 947594 29 96.6 32 ............................C ATCAAGATTGATAGGTCAATGATTTGTGCAAG 947533 29 93.1 32 ..............T...........T.. GTTGATTTAGTCCTTGATAATTTAGATATTAG 947472 29 89.7 33 ............T.T..A........... AATACAGTTAAATTAGTATATAAATTAATGAAA 947410 29 86.2 32 ............T.T..A..........C AAAATATAAACTATTTCCCTTCGCCTGATCCT 947349 29 93.1 32 ..........................TT. TAAGGGTTGCTATCTGCTTCTTATTAATGGCT 947288 29 93.1 32 ..............T..A........... AGATACTGGCTAATTCAAAGAGCCAAAGAAAG 947227 29 93.1 32 ..............T..A........... AATATTCACAATTACACCTCTATTTCATAAAA 947166 29 93.1 32 ..............T..A........... CCTAAGGCTTGGTTATGCTAAGAAAAACATGA 947105 29 93.1 32 ..............T..A........... GAAATTGAAGATGAATTGGTGGAGAAAGAATA 947044 29 89.7 31 ..............T...........T.A CCCCATACTCTAATAGACGGTAGAAATGATA 946984 29 75.9 0 ..............T.TA...T.A..TT. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 95.5 32 GTAGTCCCCGCACAGGCGGGGGTGATCCT # Left flank : AATCCGGTCCATGACAATATAATAGAGATTGGAGTAGTAAAAGTTGGAGAAAAACAAGAAAACTTTCAAAGATTTATAAAAATTGAAGGAAAATTACCAGAAGAAATAAAAAAATTAACAAGAATTGACGATGAAATGCTAGAAGAAAAAGGAATTCCATTAAAAAGAGCATTAGAAGAGTTTATTGATTTTATTGGTGACACAAGAATACTAGGTTATAATGTTGCTTTCGATATAAAATTTTTAAACTCCTCATTAGAAAAAGAAGGTTTGGCAAAAATAAATAATAAAGTTTATGATATCATGCAGTTTGTAAAAAAAGATAACTTATTTTTGAATAACTACAAGCTGGAAACTGTTTTGAAATCCTATAGCATTGATGAAGAAGTTCCTCACAGAGCTCTTGAAGATGCAATTCTGGAAGAAAAATTAATTCATAAAGTGAATAAATTATGGGATATTTTATAATGAAAATGAGATAGTTACGGGATCTTTTAAGT # Right flank : ACAAAAATGGAAGTTGTTAAAGTTATCTCCAAAGAAAAAAAAGAAAGGTGAGAAAAGATTATGAAAAAAATAATTGATATGTTCATAAAGAAAATAGAAGGCGGTCTGGAAAGATTTGATAATGAAGATGCAGTCCGTAGCATTGGCGGGCTTGAAAGCTTCTTTTTAGATAACTTCGATGAAATTAATAAGAAAAACGACGAGGTGGCTCAACTAGGTTTTGATCTGCAAACAGAAATAGTGGAACTAGAATCAGGTGGAGATAATCAAGAAAGATTAGTCAGGATAGAGAGGATACTAGACAAGATAAAAGAAGCTAATAAGGTACACTAACATTTAAGTTGGGGTGTTTTTGTTTTAAAGCTTATATAGTAAATTTTGTTTTCAGGGAGGAGTGCAATAAGCTTATGAGTATAATTGATGATTTTTTTAAAGAAATAGAGAAGGTCTTATTTGCTGAAGCTTCCAACAATGATTGGGATTTATTTAATGATTTAGAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCACAGGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1528568-1531343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066287.1 Peptoniphilus harei strain FDAARGOS_1012 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1528568 31 100.0 36 ............................... CTATTACTACAGATGAACTTGAAGAAGTATTTAATG 1528635 31 100.0 36 ............................... TTTATCCATATAATCACCCCTTAAAATGGAATGTCG 1528702 31 100.0 36 ............................... CTATAATAGAAGAAATTGTTATTAAATCTATTATAG 1528769 31 100.0 35 ............................... TTGCAGTTCCTAAGAATTATTTTATGAGTTCTAAG 1528835 31 100.0 35 ............................... TCTATGTCTTTTTCTAACAATCGTCTCTCCTCAAG 1528901 31 100.0 36 ............................... GTTTCAAAGCCTTTTTGTTTGCCAAATGCTCCATAG 1528968 31 100.0 37 ............................... AGAGGTGGACCTTGGGAAGTCTGGGCTTTACAAGTAG 1529036 31 100.0 35 ............................... AATCTTAGCAGAAGAAAGTGAACTAGAAGACGATG 1529102 31 100.0 35 ............................... ACATTTAGTTCTCATGATTTCTGCTGTATCTACAG 1529168 31 100.0 37 ............................... TCCGACTAAGGCCATTTGAGGTCTAGTTACCAAACCG 1529236 31 100.0 37 ............................... ATCAATCCTAGAATATAAAAAAAGCCTTGGTATCAAG 1529304 31 100.0 36 ............................... AAATTCCATATTAGCCTCCTATAAAAATAAGAGCCG 1529371 31 100.0 36 ............................... TCCTATCTTGTCTTGCCTTGCGTCAAATGATGTTCA 1529438 31 100.0 35 ............................... CCAGGGATCCTATACAGAAAGGCGAGAGAGGGAAG 1529504 31 100.0 36 ............................... CGAAGATTTTGAAAGTTACACACTATCAGAGTTTAG 1529571 31 100.0 37 ............................... ATGAAACAATTTGACTCATCTTACTCGGCATCAAGGG 1529639 31 100.0 36 ............................... TGACAAGGCGGGCCTTGATAAAGAAAAGCTACTCCG 1529706 31 100.0 36 ............................... TAAAAACATATTGTCTTTGTTTAAAGTCCAAACCTG 1529773 31 100.0 36 ............................... TTGGTCATGGGCACTCTCCAAGTAATCAATAACCCG 1529840 31 100.0 36 ............................... TGCTTACTCCATAGACTTTGGTCCAGTTGAGGTGGG 1529907 31 100.0 37 ............................... ATATCCTTATCATTAATAGCCTGGTCTTGAATATCAG 1529975 31 100.0 37 ............................... CAATTGAGACCAAACCAAATGACATGATTACCTCCCG 1530043 31 100.0 37 ............................... TCGTCTTTTAAGACCTCAACTCTCGCACCTAAAAGTG 1530111 31 100.0 35 ............................... TGGCATGGCATAGATCCTCATACCTTTTGTATGCG 1530177 31 100.0 35 ............................... TTAAAAAATCTTTTGTATCTACCAAAATATCAAGG 1530243 31 100.0 35 ............................... AATGATGCCTAATAATTGGCTTAAATGGATTGATG 1530309 31 100.0 35 ............................... CAATAAAATTTCTTCTAATTCGTCTTCTGTTATAG 1530375 31 100.0 37 ............................... CATGTTATCCACTCCATATAGTCCATTATACAGAGAG 1530443 31 100.0 35 ............................... AATGTCTTTCTTGTTAGCTACTGACCTTCTAGATG 1530509 31 100.0 36 ............................... ATAATAGAGGTTTTAAAAACATTCCAGGATTTGAGG 1530576 31 100.0 36 ............................... AAAATAATCAATTAACTAGCGTAATTATCCCAAATG 1530643 31 100.0 38 ............................... CATAACTACAAGGCCCATGATGTCGGATATTTTCCAGG 1530712 31 100.0 36 ............................... ATAATAGAGGTTTTAAAAACATTCCAGGATTTGAGG 1530779 31 100.0 37 ............................... ATATCTTTGGATAGTAGGGGCTGAAACCCCGACCAAG 1530847 31 100.0 35 ............................... CAATTCTTTCCTTGCCGTCCCATTCAAGACCTAAG 1530913 31 100.0 35 ............................... TTACGTATCGTGCATCTTTGCGCACGAAAAGTCAG 1530979 31 100.0 36 ............................... AAACTATCAAAAAACAGTTAATAACACAATAATATG 1531046 31 100.0 37 ............................... GCGGTCAAAGAGCCTTATAAACTACGAGTTTTAGGCG 1531114 31 100.0 35 ............................... TCTAATAACATCTGCTACAACTGGTACAATGTATG 1531180 31 100.0 35 ............................... ATATTCGCTTTTAAAACTTGTGCTGAATAATTTTG 1531246 31 100.0 36 ............................... TCTAATATACATTAGTGTAGTATTATAGGACTCATG 1531313 31 90.3 0 ........TTC.................... | ========== ====== ====== ====== =============================== ====================================== ================== 42 31 99.8 36 TCGCACCCCATACGGGTGCGTGGATTGAAAT # Left flank : ACAGGCCCTTTTATTAAACTCTTACTTGAGAGGAGATATAGAAGCCTATCCACCCTTCATGATAGGAGGCTGAAATGCAAGTACTAATTACTTATGACGTAGAAACAGTAACACCAGCTGGCAAAAAAAGATTGAGACAAGTAGCAAAAGTTTGCCTTGATTATGGGCAAAGAGTACAGAACTCAGTATTCGAATTAAACATTTATCCAGCTGACTTAGTAGAAATAAAAAATAAATTAGAGAAAATAATTGATCCCCAAAAAGATTCCATAAGGATTTATAATTTAGGGAAAAATTGGGAAAGAAGAGTAGAGAGTCTGGGAAGAGACGACACCTATAACCCAGAAAAAGACTTGTTGATATTGTAAAGCTTATGAGACTTGGACCTGGACATAAAAAACCTAGACCTAACTCACAAAAAACAAAGAAAAAAGAGACAAAACTCTTCAAAAAATGATTAGCTGTATTTTTTAGCAGGAGATAATGGCTAAAAAATGCAG # Right flank : TTTGGGTTCAAGTCCCATCCTTAGCACCATTTTGTCGCAAACTTTTTTATGGAGAAATTAAAATATTTTAAAAATATGCCTATCCTAAAATTTTTAGGTTAGGTTTTTTGTTGTTAAAAATTTTAAAGATTAAATAGAAACTAGCTAAGGCTAAGTAATATTAGCTTATGAAATTTATTCTGGAGAAGCTAAAATTATTTCAAGTAAATAGTATAAAGGTAAGGATTTTTACTAAGTCATTAGGAGATATGATCTGTGAAATTATTATGATGTTGAAGGTTATTAGGAATTTGTAAAAAATTATGAAGTGGAAAAATTTTATGAAGTTGCAAAAGTTTATGACGTAAAAAATTACTATGAGGTTGTAAATAATTATGAAGTTGAAAATAATTGTGAAGTTGAAAATTATTATGAAGTCATTAAAGGATAAGATGTAGAAAATTTTATCATTTTATAAAAATTATTAATTCATATAGAAGAAAGTCACAAGGCCCTATAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //