Array 1 904-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBZQ01000002.1 Pseudomonas urumqiensis strain T3 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 903 29 100.0 32 ............................. AGTCCGAATCTTCCGTCGCTGGTGAGGATTGC 842 29 100.0 32 ............................. TCACCACCAGAAGAACCGTGCGAGGCTAAATC 781 29 96.6 32 ............................T GCGTTCAAACAGATGCTTGCCGAGCTGGCTCA 720 29 100.0 32 ............................. AGCAGGAACGGCCCACTCCTGCTGGCAGTTGC 659 29 100.0 32 ............................. CTGGCCATGCAGGACCTGCAGTCATTCGTGAA 598 29 100.0 32 ............................. ACCATGCTGTTTACCTACGGCCACCGATACGC 537 29 100.0 32 ............................. ACTCCTGCATGTTGTAGCCGATGGTCTGGCGG 476 29 100.0 32 ............................. ACGACGCACTGCTGATCGACAGCGAGCCTGGC 415 29 100.0 32 ............................. GCCCCCTTCAACCGGGCCGCTGTAGTAGCTCC 354 29 100.0 32 ............................. GCGCCGAGGTACACGACAGCAACCCGCAGTAC 293 29 100.0 32 ............................. GTGATGAACCCGTCATTCCGCCGCTTAGCCGA 232 29 100.0 32 ............................. CGCGCCGACGACTTCGACTATCCCTTCTTCAC 171 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CTCGGCGGCGCCGGCTACGTCGAAGAGACCATCCTGCCGCGGTTGTACCGGGAGGCGCCGGTCAACTCCATCTGGGAAGGCTCGGGCAACGTTCAGTGCCTGGATGTCCTGCGCGCCCTGTCCAAGGAAGCGGGCGCACTCGAGGTCCTGTTTGCCGAACTGGGCGATGGCCAGGGCGAGGCTCGCCTGGCCGGGCACATCACCCGCCTCAAGGCCGCCTTCGCCGACACCTCCGACATCCAGTACCGCGCCCGGCAACTCACCGAAGACATCGCCCTGGCCCTCCAGGCCAAGCTCCTGCTCGAAGCCGGCAACGCGGCCGTGAGCGACGCCTTCATCGCCAGTCGACTGAACGGACAAGCGCGGACGTACGGAACCTTGCCGCGAGCGCTCGAGGTGACGGCAATCCTGGAACGCTCGCTGCCCGCCTGAAGGGCGGGGGCTCGGTAGGGTTTGGGGTAGCGGCTTTAGTCCTTGTCGATCAAGCCGTTACGATTGGT # Right flank : TTGTTGTGGCTCAATGATTCTGGACACCCCGATAGGGCGCTAAGCTTCGCCCAGCCATACGGTGTTTACATGACCAGAAGATCATTCAGTACAGATTTCAAACTCGAAGCAGCCAGCCTGGTGCTGGATCAGGGTTACTCGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167-621 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBZQ01000007.1 Pseudomonas urumqiensis strain T3 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167 29 100.0 32 ............................. CACACCTTGTCCGCCAGTCGCCTTGCAGTAGC 228 29 100.0 32 ............................. CGACCTGTCGGGCCTGCAGCGCGGCGACTTCG 289 29 100.0 32 ............................. CCTGCGGCCCGGAACTCGGCCGCGACGTGTTC 350 29 100.0 32 ............................. GACGCCCAGGGCAACCCGCTTGTGCAGATCAA 411 29 100.0 32 ............................. CCGAACACGGCGTGCTGGGTGTCCTGATGCAC 472 29 100.0 32 ............................. AACAGCGACGTACGGCCGTGCTCGATGCAGTA 533 28 96.6 32 .....-....................... CGGATCACGCCTTCACGTTGGCAGTAGCCGTA 593 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGCTGCGCTACCTGACGAACTACTACAACCATCAGCGACCACACAGTTACAACGGATACAGAACGCCAGCGCAAGCCGAATCGCTGGCCGGATAAACCTAAACCAGTGTCCAGATTTTGTTGACCACAACACCTGCGGCCTGCTCGGTTCATTCAATCCAGAGAGCG # Right flank : GTGTAATAGCGTTGAGTACCGGAGGATGTATCCGTGGCAGATTCCAACAAGCTCGGCGATGAGCTGAAAAGCCGCCTTCGGTAACTGGCCAGCCTGCGCCAAGGCTCGTCTCGCTGGAGCGTGGGTGATGCCCCGCATTTTGTAGAGCGGGGTGAAGCGCATGAGAGCTTCAAGCAAGAAGCCCTGGCGGCGTGGATGGCGTATCAGGAAGCCGGTCGGCATTTGTCCGGGCAAGAGACTCGGTTTTGGCTAAGTACCTGGGGGATGGCGCAGAGGCGGCGCTTCCAGGTGCCACGATTGATTGTCACCGAAGATGCCGAGCGTGGCTGGAGCGTTGCCGTCGGTGCCTTGCCGGTAACGACCCGCTGGTCGGGAGAAGTGGCTGACGCCTGGCTCGTATCTGCGACCTGAATATGCGCGCTTAGCTGACACATTTTTCTGCACGGTGCCTCCTGAATGGCTTTAGAAACGGCCCGGATGCCCGCTAATGTGACCGAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10512-13710 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBZQ01000007.1 Pseudomonas urumqiensis strain T3 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10512 29 100.0 32 ............................. TCGATGCTCAGGCGTTCAGTGAGGGCAGGGTG 10573 29 100.0 32 ............................. GCCTTGGTTGTGTCGCCAAACGATTCGCGCTC 10634 29 100.0 32 ............................. GTTGACCCGTTTGAGGATTGATCCTGAATCCC 10695 29 100.0 32 ............................. GGTGCCGCGACCGGTGGGGCGGGTGCGTACGT 10756 29 100.0 32 ............................. GGTGAGCAGCAGGCAGGCGGCGATGATCAGGC 10817 29 100.0 32 ............................. CGATCGACACGCATATCGAGGCGGGTGGCGGT 10878 29 100.0 32 ............................. TCGGGTCACGGCAGGCATGGCGTTACTCGTTC 10939 29 96.6 32 ............................T GCTTGCCTTGTACGGCCTGCCGCCATTCACGC 11000 29 100.0 32 ............................. CCCTGAAGGACGCTTGCATAGGTGTCATCGCC 11061 29 100.0 32 ............................. CCCGTTGAAACACTGAACGGGTGCCTGGGTGC 11122 29 100.0 32 ............................. GCGCACAATGTCTGCCCAAAACGTATGAACCC 11183 29 96.6 32 ............................T ACACCGAGAGCACGGCCTACGGCGTGCGGCAA 11244 29 100.0 32 ............................. GTTGTTTTTATCAATTCTACTGGCTCAGAGGC 11305 29 100.0 32 ............................. CGCAGGGTGCCGATCTTGTAGCCGGCCGAGGT 11366 29 100.0 32 ............................. CTTGGCCTCGAATCAGGTCACATTGGCCACTC 11427 29 100.0 32 ............................. GATGGTATCGGCCACAGCCATTCGCCCGAATA 11488 29 100.0 32 ............................. GAACGGAAGGAATTATGGACAACGTGATTCAG 11549 29 100.0 32 ............................. CCTTATAAATCAGGCATTTAGGTGTAACGCTT 11610 29 100.0 32 ............................. ACGGAATCCGCAAACACGTTTCAGTCGGCTAC 11671 29 100.0 32 ............................. CTCGCTGTCCTTCATGGGCATTCGGCCTTGTT 11732 29 100.0 32 ............................. ACCGGCGAGCGGATGACGCAGAAGATGTACGC 11793 29 100.0 32 ............................. ATGGTGTCCTTGTTCGGCCTTTCTCCAAGGTC 11854 29 100.0 32 ............................. GCCGACAGCCTAGCTGGCGTGCTGGAAGAGCA 11915 29 100.0 32 ............................. ATGATTATGAACGTGCTACAGGCCGAACGGTC 11976 29 100.0 32 ............................. GCCGACACGAACCGGATCGCGGTTCTGTCCGT 12037 29 100.0 32 ............................. CGTAGGGCGCATGAGCGGGCGATGTGTGAGGG 12098 29 100.0 32 ............................. CATCGCCATCTTCGGCAGGGACGGAATATGTG 12159 29 96.6 32 ............................C TCAGCTCGTTCAGCCAGTCCAGCCGAACCATC 12220 29 100.0 32 ............................. GAGTACGTCGAGCAGCGATCACCGAGGCTCAC 12281 29 100.0 32 ............................. CGATGGATTGGGAAGGCAACAAACAACAGGTC 12342 29 100.0 33 ............................. CTGGCAGAGGCGCGCGACGGAGTAGACGTTTTC 12404 29 100.0 32 ............................. GCCCGGAACTGATGGTTTCGGGGCCTGCCCGC 12465 29 100.0 32 ............................. TTTTCATCGGCTATTCCTTAGAAACAGAGGGC 12526 29 100.0 32 ............................. AACCTTACGCCGCCTGCTTGGTATCAGCGAGC 12587 29 100.0 32 ............................. CGACTAATCGCCCGTTGGGCGAGGTCGAGGCC 12648 29 100.0 32 ............................. TTAAAAAACACGGGGGTACGACGGTTGATGGC 12709 29 100.0 32 ............................. GTCGATCACAGCGCGGTTGACCTTGCCGTAGG 12770 29 100.0 32 ............................. TACTGCGCGGCCTGGCCAGACAGCGCCATCAG 12831 29 100.0 32 ............................. TACCAGGCCAGTATTACGCCAAACGTATCGGC 12892 29 100.0 32 ............................. CGGACGCTGTAGCGATGGCCGTCGATCTCGTA 12953 29 100.0 32 ............................. GCCAGCGAGATGCAGGCGCGCCTTAACCGTTC 13014 29 100.0 32 ............................. GAGTGCCGCTAATGCCTGTTTCAGATTTTGGT 13075 29 96.6 32 .............T............... CATCGGAGGCTGTGCACATGTACTACTGCCAC 13136 29 100.0 32 ............................. GTCCGCGAGAGACGGCTCGGAGCCAGGCTTGT 13197 29 100.0 32 ............................. GGCAGTGCGGCTACGTTGGCGCCGAATGGCAG 13258 29 96.6 32 ...........G................. TACATCAGCCGGAAGGTCGGCGCTGTCATCCA 13319 29 96.6 32 ...........G................. CGCGATTTCGGCGGACGCTGACCCTTGGCGGC 13380 29 96.6 32 ...........G................. ACCCACATACGCATCAATGGCCATAGGTCACC 13441 29 96.6 32 ...........G................. TCCGCCGAGGGTAATCCAGCTGTATACCCACA 13502 29 93.1 32 ..A........G................. CGGCCCAGCTCGCTGCCGAAATGTTCCAGGTC 13563 27 86.2 32 .....-.....G..T.........-.... CCATTGAGGGAGCGACTATGAACGATCGAGTG 13622 28 89.7 32 .........A.-...............G. TCTGGCAGCTCTGGCAATCGGGCACCTGCCAC 13682 29 75.9 0 .CA....T....GAA..........G... | ========== ====== ====== ====== ============================= ================================= ================== 53 29 98.4 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GGCCGTATCATCCCGCTGATCGAGGAAGTGCTGGCAGCCGGTGGTATCCATCCACCCGAAGCACCGCCAGAGTCCGTCCCGCCAGCCATCCCAAACCCCGAAAGCCACGGCGATGCCGGGCACAGGGCGAAGTAAATGACGTTTTTGGTCGTCGTCACCGAGAACGTTCCGCCCCGCTTGCGCGGCAGGCTCGCAATCTGGCTGCTCGAGGTGCGTGCCGGTGTCTATATCGGTGATGTCTCGCGACGCACCCGCGAGATGATCTGGCAGCACCTCGAAGCGGGCTTTGAGGACGGCAACGCGGTGATGGCCTGGGCGAGCAAGAGCGAGTCCGGCTACGACTTCCAGACGCTCGGCGCCAACCGCCGTGAACCCATCGACTACGACGGCCTCAGGCTGGTCGCTTTCCAGCCCATACAAGACTCCGATCTTTAACAAGAAAACCCGGTAGAGTTCTTGTAGCCGATTTTCTTCTTTATGAACAAACGGTTACGTTTGGT # Right flank : GAATAACCCTGTACTGGTAGCGCACGAGCTGTCGTACTCCGCACCACCCACAAGGAACTCGCCTCACGGCCTCCGCGTCTATCGCGCAGTGGTTGCGCGGGTGCTATCTCCCGTCATGCGCGGCGGGCAAGATAGGCGCAGGAATCCAGACGGAAACGCCAGAACGTGAAGATCGACTCGAAAGTCTTTGTCGTAACGCAGACCGCCGAGGAGGCGGTTGATCGGCTCGAGGCCTTGCACAAACAGGCCACCTCCGCGCTGAGCCAGGCGCTCAAGCGCTATGTGAAGGAGCGGCTGGAGCCGACGGCGCAGGAGCGGGCGCTGTTTCGCTACCCGCAGTTGCGGCTGAATTACCGCAGCCATGCCGACGCGCCGCCGAGCACGCGGGCCTATGCCAAGGTGCAGACGCCGGGGCTTTACAGCGTGACCATCACGCACCCGGCGGCGTTTCGCGGTTACCTGCTCGATCAGTTACGGCCGCTGATGAAGGATTTCGCCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //