Array 1 389-2101 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTQ01000154.1 Flavobacterium psychrophilum strain 17830 contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 389 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 464 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 540 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 616 46 100.0 30 .............................................. AGCGATGGAAAATGCGCACGAGCTTACGCT 692 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 768 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 844 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 920 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 996 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1071 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1147 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1223 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1299 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1375 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1450 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1526 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1602 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1677 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1753 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1828 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1904 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1980 46 100.0 30 .............................................. TAGTAATTCTTTATCGCAATCAAAAATAGC 2056 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3272-2813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTQ01000173.1 Flavobacterium psychrophilum strain 17830 contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 3271 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 3202 42 100.0 27 .......................................... CTCTCCAAAAGACCCATCTCCAATAGT 3133 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 3064 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 2995 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 2926 42 97.6 27 ................................G......... TCTATCAAAAGCAGCATCTCCGATAGA 2857 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [2843] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : ACCCATCTCCAATAG # Right flank : AAGCGCAAAAGCATTCTCTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCCACCTTAGCAGTAAAGGGAGCTTCTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 17-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTQ01000208.1 Flavobacterium psychrophilum strain 17830 contig_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 17 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 86 42 100.0 27 .......................................... CTCTCCAAAAGACCCATCTCCAATAGT 155 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 224 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 293 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 362 42 97.6 27 ................................G......... TCTATCAAAAGCAGCATCTCCGATAGA 431 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [440] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : ACCCATCTCCAATAGTA # Right flank : AAAGCGCAAAAGCATTCTCTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCCACCTTAGCAGTAAAGGGAGCTTCTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //