Array 1 50158-47466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLE01000011.1 Haloferax sp. ATCC BAA-645 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50157 30 100.0 37 .............................. AGGTACTGGAGGTAGGTCGACTCGACTCTAGGCACGA 50090 30 100.0 36 .............................. TCGTACTCGCTCTCGGCCGTCACAGTCCCTCTCTGC 50024 30 100.0 36 .............................. CACTCCTTTAGGTGGCGGGCGGCGCGTTGGACACCC 49958 30 100.0 35 .............................. ATTTGACATTGGTGTGTTGCCCCACATATGGGAGA 49893 30 100.0 38 .............................. TTCTCGTAGCTGATGGTGATGCCGTTCGAGTCGTCGCA 49825 30 100.0 37 .............................. GGTCTCCTAAGCCAAGCCAACAGCCGCGCCCTCGAAG 49758 30 100.0 34 .............................. CGCCCCGTCGATGGACAGGAACCACTTGATGAAC 49694 30 100.0 35 .............................. GACTTCGGTCCTCACGTCCGTCGAATACCCCGCCA 49629 30 100.0 35 .............................. CCTAACGACACGGATTACGGGGTCTTCGGTACAGA 49564 30 100.0 36 .............................. GAGTCTGGGACTATCACGTCGGCCATTGGCCCGGGT 49498 30 100.0 35 .............................. ATCGCGTGTACGCCCGGCGGGCGCGCCGCTCGCGG 49433 30 100.0 37 .............................. GTCTACAGCGGCGTTGGTGCCATTGGGCTACTCGGTG 49366 30 100.0 36 .............................. AAAAACGGTTACTCGCCCGAAGGGGCCGAGGCAGTC 49300 30 100.0 33 .............................. CGCGCTCGTAGTCGGAGTCGGGGTCGCGGACGA 49237 30 100.0 36 .............................. CGACGCCGTTGCCGCCCATCGCAACGACGAACTGGT 49171 30 100.0 38 .............................. CGAATCGGTGTTACTCATGCACTCTCACCTGCCCGGAA 49103 30 100.0 38 .............................. GGTCAGGGGGGCGACACTCCGGTTGCCAAATTCACCGT 49035 30 100.0 37 .............................. GCACACTGCGTTAGTGCCGCACCACGTTGATAGACTG 48968 30 100.0 38 .............................. ATATTCGGTACTCTGTGGGCTATCACGTTCAATCTCGT 48900 30 100.0 36 .............................. TCTCTTAGTTCGTCTCTGGACTCCTTCGAGAGTCGG 48834 30 100.0 35 .............................. TGGTGGTTCTTCGGTTAGTCGGTGGTTTGGCGTGT 48769 30 100.0 38 .............................. AGAATAGTCGGTATTAGAGATGGACGAACGAATCCCAC 48701 30 100.0 37 .............................. AGGGTGCAGGTCGCGGACATCGAGCGCCCGAAGCGCC 48634 30 100.0 38 .............................. GCCTCCAGGAGCGCGCGGTGCTCGTCGCTCGCGTTGTC 48566 30 100.0 34 .............................. CGGTTCGACGACGACGCGAGCTTCGCAAACGCCC 48502 30 100.0 30 .............................. GCGCGCCGGGGACGATGGTGTCGAAGTGGT 48437 30 90.0 0 ........................N..C.A - Deletion [48408] 48418 30 83.3 35 .GGATN........................ GAACTGCGCGCCGGGGACGATGGTGTCGAAGTGGT 48353 30 100.0 37 .............................. AGCCAGTGGCTCTCGGAGACGGGCACCGAACGCGTGC 48286 30 100.0 36 .............................. AATGGCTCTCGTTCTCCCCGCGTTAGGACTCACGTC 48220 30 100.0 37 .............................. GGCTTCCCACGGCGTCTGGTTGAGCCGCTCCAAGAGC 48153 30 100.0 36 .............................. CAAGGATGCCGACCGCCCGGACGAGAGGCCACGTAC 48087 30 100.0 35 .............................. CGCTTTACCGCCGACTGCGACAGCGACGCGCCCCG 48022 30 100.0 37 .............................. GTTCCCGCCGCGCTTCAGGAACCACCGGAGCGAATCG 47955 30 100.0 36 .............................. ACCTCCCGCGAGCGCCACTCTGCGACCCCGTGAATC 47889 30 100.0 36 .............................. GAGACTTGTCCGCCGTCGGCGAGCAGGTAGCGGACA 47823 30 100.0 36 .............................. CAGCTAAAACAAATCCGCACGTCGCGCCAAAACCGC 47757 30 100.0 35 .............................. GTGGACTACGGCGACTTGTTCACCTACGACCGCGA 47692 30 100.0 34 .............................. TACAACTTCGCGGCACGTCCGGGGTCGAACGGTG 47628 30 100.0 37 .............................. CGCGAGCGGGAGCGCAGCCGCGACTACGTGGCCGACC 47561 30 100.0 36 .............................. GACACGGAGCTCCGCCGACACCTAACGGAGCCGCCC 47495 30 80.0 0 ...............G.A.C.A.G.....A | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 98.9 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CTCGTCGGTGAGTCGCTCACCGACTTCCGAGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGAGAGTGGTTCTCGACAGTGCCAGTGACGAACCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGCGACGGCATTGCGATGCACGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTACTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGAGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 55959-60458 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLE01000024.1 Haloferax sp. ATCC BAA-645 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 55959 30 100.0 37 .............................. GGACCACAGTCGTTCGATACGGTCGTGTTCGACCCAC 56026 30 100.0 37 .............................. CGGTGGACGACTGTCTGGCCGGGTTCGAGCGCCTCGA 56093 30 100.0 36 .............................. GACTTGTCCGAACGGCATCGTCCCGAGGCAATGCTC 56159 30 100.0 37 .............................. GGACAGTCGCGCTTTGTGCGGCCTCTTCGCGCTCGTA 56226 30 100.0 38 .............................. AACGTCAGCATACCCGTCCCCTGACCTTTGATTATATC 56294 30 100.0 35 .............................. TTGCGGTCCCAGTTCTTCAGTCATGGTCTTCCTCT 56359 30 100.0 35 .............................. TGGATATGTTCGAGGGCAAATCCCCACGTTCGGGC 56424 30 100.0 35 .............................. ACTGTCCCCACTTACCAGAGAGAACCCGAGAGATC 56489 30 100.0 36 .............................. CCCATCTCGTGACCCGAGTCGTCCCACCCGCCGAAC 56555 30 100.0 37 .............................. CATCACCTCGGGGTTATGGTCGGCAAGGACGAGTCGG 56622 30 100.0 35 .............................. GATGACTACTGCCTCGCTCATCTCCCCGGACCCCG 56687 30 100.0 37 .............................. TCGAAGGTGCGGGATTCGGCGGCGGCGAAAAGACACT 56754 30 100.0 35 .............................. CAGCCAGTCGTCGTCTGCGTTTTCGGTGTGCTTGA 56819 30 100.0 38 .............................. GTCCTGCTCGACGAGAACGGGTCGCCGGTCGACCACCG 56887 30 100.0 33 .............................. AAGGACCACGTCGGATGGGTCGGTGACACGCCC 56950 30 100.0 33 .............................. TCGTGCCACGTAAGCGTCATCGTCGCACCTCGG 57013 30 100.0 36 .............................. GACGAACGTGTCAAGCACGCAGTTCAAGAACGAATC 57079 30 100.0 36 .............................. AACCTCTTGGACCTCACAGAGGGGACCGCAACGATT 57145 30 100.0 35 .............................. AGTCCCCGATAGTGACCCGGCAAACCCACCGGAAT 57210 30 100.0 37 .............................. CTTCTTTCTTGAGACCGAAAATAGCGGTCTGACGGCG 57277 30 100.0 35 .............................. GGCCGTTTCGTCTCCAGCGTCGAGGTCGGACAGTA 57342 30 100.0 38 .............................. TCCGTCCAACAGTACCCGCTCGGCGTCGTGTAAGAACC 57410 30 100.0 33 .............................. GTTAGTGTTGGCCCCCGACCGGACGAAAGGCGG 57473 30 100.0 35 .............................. GATGACGATGTCGACCGATCCAGAGGTCTCGAACT 57538 30 100.0 35 .............................. ACGGGGAGGAACCCGACTCTTCGGGCCACAACCCA 57603 30 100.0 35 .............................. CCCAGATCGTTGAGACAGAGAACGCGAGAGTGCCA 57668 30 100.0 37 .............................. GACCAGGAGTGGCTTGAGGAGGCCGACGACGACCACC 57735 23 73.3 0 ......................N------- - Deletion [57751] 57758 30 100.0 37 .............................. GACCAGGAGTGGCTTGAGGAGGCCGACGACGACCACC 57825 30 100.0 39 .............................. AACTCGTCGCCTACGACGGGGAGGCGGTCGAGATAGAGA 57894 30 100.0 34 .............................. CGTCCTGCTTTTCGCCCTCCTCACGGGATGTCGC 57958 26 86.7 0 ..........................---- - Deletion [57980] 57984 30 83.3 34 AAGCN......................... CGTCCTGCTTTTCGCCCTCCTCACGGGATGTCGC 58048 30 100.0 34 .............................. CCGATGCGGTCGCGTTGGGTGTTCGTCGTGCCGG 58112 30 100.0 38 .............................. CATCGGTTGAAGGGTAGCCCGCATCCTCGCCCCGCACC 58180 30 100.0 38 .............................. GAGCACAGACACCCCCACCGACGGCAACGGCGGCAACG 58248 30 100.0 37 .............................. TGGTCGGCCTCGGTGAAGATCGCGTCCGTCGAGAACG 58315 30 100.0 37 .............................. GTCTTCGCGTTCCTGCTGGTCGCGACCGCGGCCACCA 58382 30 100.0 35 .............................. ATGCTGGTGTCGGCTTCCATGCGCTGACCGCGGAG 58447 30 100.0 36 .............................. GGCAGTTCTGCAAAGTCTGTCCGATATCGTCAACCC 58513 30 100.0 34 .............................. CTCCGCCTGCGGGTGACGGAGGCCGCGTCTGCCG 58577 30 100.0 32 .............................. GAGGTCAAACACGACGCGACCATCGAACAAGT 58639 30 100.0 35 .............................. ATTTCGGAGCACCCGCATCGCAGTCTCGCCGTCCT 58704 30 100.0 36 .............................. GCGTTGGTTAAGACCGCGAGGGCGGTCGAGAGTGTT 58770 30 100.0 37 .............................. GGGCCAGAAGACCCCGACGTGTTGGCGCACGCCAGGG 58837 30 100.0 37 .............................. AGCACCTCGAGGGAGAGGAGGCCGAGGCCTCCAGAGA 58904 30 100.0 32 .............................. GTCCGTACTAACCGGGTCGATATCGCCGGATT 58966 30 100.0 36 .............................. GAAGAGCGCCTCGAATCCGCGTCGAACGCGGGGAGC 59032 30 100.0 35 .............................. CTCTGCGGACTCGACAAGGTCGTCAATCGGGACAT 59097 30 100.0 37 .............................. CGAACCGGGCCGGACGCGCCGGCCAACACGAGAGCGC 59164 30 100.0 38 .............................. GTCGTACATGGCCTCGAAGAAGTCGAAAGGGAACGTCG 59232 30 100.0 37 .............................. TTTACTCATTTAGAATGCACCCGAGTTGTAAAGGCCG 59299 30 100.0 37 .............................. GGCATCCTGATTCGAGGAGTTGCGCCTCGCTCGCGAC 59366 30 100.0 38 .............................. GGTTTGCGAGACTACGGTGAAGACGACCAAATCGGCCT 59434 30 100.0 35 .............................. GACCCGGACATCGTGGCCGATGTGTTTGACCTCCG 59499 30 100.0 35 .............................. GACGACCCCGAATGGGACGGGAGCGCGGCAACGTC 59564 30 100.0 35 .............................. TTCGTCTCGGAGCCCGTCGAGGAAGGCGAGCGCGT 59629 30 100.0 36 .............................. CATCTCGCACAACGGCAATGCAGTCTCTGTTGAGGG 59695 30 100.0 35 .............................. GTCTGGCAAGTCGCCGTATGACACCATCCAGTCGC 59760 30 100.0 38 .............................. CGCTGAGAACGTCAATCTCTCACAGGGTTGGGCTAAAC 59828 30 100.0 37 .............................. ATGGGGGCGATATCATCCATGTACTCTCCCGGTCCTG 59895 30 100.0 37 .............................. ATTGTCCCAGAACCCACCCACCGTTTTTAGCAGAGTG 59962 30 100.0 37 .............................. ATCCGTGGTTCACCATATTGGCAATACGTGACTGTGG 60029 30 100.0 37 .............................. TGAAAAAGAACACCCCCTACTCGGCGTTTTTAAACAA 60096 30 100.0 37 .............................. GTGATGAAGATGAGCTCGTTCGCCGGCGCGTTGTCGA 60163 30 100.0 37 .............................. AACCCAAAGCACGACGACGGCGTTGTCGGGTCGACTG 60230 30 100.0 36 .............................. GGGAATGACACCGAGACGATCATCGCACTCCCGGCA 60296 30 100.0 36 .............................. GTGACCGGCCTCACCCGCGGCGCGCTTCTCGGAGGT 60362 30 100.0 37 .............................. CGCTGGCGGCTCAGTGCCGGCTGTCTCGAAGTCGACG 60429 30 80.0 0 .......CA.A.........A.AG...... | ========== ====== ====== ====== ============================== ======================================= ================== 70 30 98.9 35 GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Left flank : ACTGCCTTCGACCGTGCACAGGGTAAGAAGCTCAGGAACGAGTCGGTCGTCAGTCAGGACTACCCAACACAGGACGTGTTCGTCTTGGTCTCCGGAAACGACATGGAGGCACACGACGCGTACGCGCGTCACCGGAAAGACGAGAAGTGGTCAAGCGCTCGGTCGGCGTTCCACTCGCTCAAGCCGACTCTCGTTTCCGTCCCCGTGGACGAAGAGTCGGACGAGAAAACTCCTCTCGTGATTCGCGTTGACGAGGATAGCCAAGACTACGATCTCGAAACCGGAGGGGGTGTGGACCTCAGCGGTCGAATCGACGCGTTGGAGAAGTGACCTGCAAGCATCCTTCTTTGCCGTGATGATTGCGATAGCAGTACCGACAGAATGGACATCGGTCGTCCTTCTGATGTCGACCCCGGGGGGTTTGGAGGGTATTGAAGGTCGACGGAAACTTTGAGGTGTAGATGGTGTGTATGGGTACTCACGTGGCCGAATCGGCCATG # Right flank : CCTAATAGTGGGGCTCACAGGATGGGCGACTGCTGTGTTTCAATGACCAAACGAGAACCACGAGACGGCGGCGGGAAGACTTTTGCAACGAGCGGGAAACGTCTCGACTGAGATGTCAATCCAGCCGCTCGATGTCCTCGGCGGGGTCATGTTCCTCGCCGGCCTCGCGGTCGTGACCGGCGTGGTCGCGTCCGCGGTCGCCGCGGGTCAGCGCCTCGGCGTCGGTGCTCTGCTCATGGTGCTCGGAACGGCCGCCGTCGCCGGGTCGCGCATGTATCAAAAAGCCCTCGAAGCGACGAACTAACCGGCATCACACCCCGTCAGACCCGTTTTTCTGGCCGTCAGGTCGAATGTGCGGCCGCAGAGGTACCGCCGCTTGGTTCGATACCAGAATCGACAGTCGACGGGCGACTCGCCGGCGTCGACATCGAGTCGGCGGAGAAACACGTCGCGGACCGCGAGGGTGACGACCAGTTCGACCGAGCCGTCCCCCGCACGTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 114606-115886 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLE01000037.1 Haloferax sp. ATCC BAA-645 contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 114606 30 100.0 35 .............................. GAGGAGCTTGTCCTTGATGTAGAGTCCCGCGCCGG 114671 30 100.0 37 .............................. GACGCGTGCGTGGCCGATGTCGAAGACTGGGACAATA 114738 30 100.0 35 .............................. CGCTTTGAAAATAGCTACCGGCGGCCACCACGCGC 114803 30 100.0 35 .............................. TTCGGCATTAGTCGCCGCCCCCACAGTCAACGTCA 114868 30 100.0 35 .............................. GCCGTACTTTGCCGCCTCGGCCGACAGCGTCACCA 114933 30 100.0 35 .............................. ATTCGGGATGGAACTGGACACCTCGGGGCTTTCAC 114998 30 100.0 34 .............................. TCTGTGCCGAGAGCAGTATTTACATTCCGAGAGT 115062 30 100.0 34 .............................. CTGCAGCTCGTTGAACAGTTCTATACGGCCGCCC 115126 30 100.0 37 .............................. GATCGCGGCAACACGCCAATCGGGAACTACCTCGACA 115193 30 100.0 36 .............................. TATTTCTTCGCCGTACTGTTCATCTTCCTCGCGGGT 115259 30 100.0 38 .............................. TTTTTTACTGCATCAGAACCGTAGGTCGGGTGAACGTT 115327 30 100.0 38 .............................. GGACAGCCCATGCGCCCACACCCAGCCGGGCGGTCCGA 115395 30 100.0 36 .............................. GGCTTCGTCAAGAGACGGAACACGATGTTGACGCGT 115461 30 100.0 35 .............................. CACGGCGGCCGTCTCGGTCACGTACAATAGTCAAT 115526 30 100.0 36 .............................. GACTCGGCAGAGGAGGCGTTCGAGCGCGAGGCTGGC 115592 30 100.0 36 .............................. AGCTTGACGCGGACGCCGACCTGGTAGTCGTCGCCC 115658 30 100.0 36 .............................. GGCCATGTGTCGGTGTCCGGGTCGTACTGCCGGAGT 115724 30 100.0 38 .............................. AGCGTCGAGTTGGCGGCCGAGATGACCGCGGTGCCGGC 115792 30 100.0 35 .............................. ACGAGCTCGAAGACGAGCAGTCAGCCCCGGACACC 115857 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGTGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTACTCGACTCCGCGTGCGAGCGTCCGTACTTCGACGCCGCCGAAATTCGTCGCCTCCAACGCGAGGAACGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTATATCGACCGCGAAGATCGCGGCGTCGAGGAGGGTTCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGAGATTCGTTTCCGTCGACCCCCGGGGGAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : CAGAGAAAACCATCCAACGAAAACAATCACCCGAACAGTCAATTCTAATTTCAATTATTGCGGACCCGTCAAATGACGGGAATAACTTTATGTCGAGTAGCCAACAACCGTGGAGACAGCAATGAGTACACAAGGAGGCGTCGGGTAACGGTGCGGATTATGGCTCACTTATCAGCGCGTTCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGACGGGACGGTCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGATTCGCCTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTGCTGGTCGCGTCTCCCGACGAGGAACTACTCGCGAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCAGGGACCAGGGGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 125425-127561 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLE01000037.1 Haloferax sp. ATCC BAA-645 contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 125425 30 100.0 34 .............................. ATGTTGACTCCTTCCTTGAAGTCCTCGGGAACCG 125489 30 100.0 36 .............................. AATTTCGATGTCTTCTATGGCACTTGCCATACAAGT 125555 30 100.0 34 .............................. TACACACGACCATGTCACTAACCACAGAGCCGGA 125619 30 100.0 36 .............................. CCTGCCTGTTTGAACGGTCGGTGTAGCCCGTGTTGT 125685 30 100.0 37 .............................. AGTCGCGGGGTTCTGACCGATGATACTGCCGATGGCC 125752 30 100.0 34 .............................. GGCTACTCTGCCTCGCTCGGGTGTTCGAGCGAGT 125816 30 100.0 37 .............................. GGGAAGTGCCGTGAGGTAGAGTTGCGTAGTCATGGTC 125883 30 100.0 35 .............................. CACCACCTCGGGGTTATGGTCGGCAAGGACGAGTC 125948 30 100.0 37 .............................. TCGTCGTACTCACCGAGAACTCTGACGACCCGCCCGC 126015 30 100.0 36 .............................. GGCTACCATCGACAAGTTAGAGGAAGACCATGACTG 126081 30 100.0 36 .............................. GCCTATTTTTCGCCGCCGATTAGACATACTGGTCCA 126147 30 100.0 38 .............................. GCTCAGTACGGTGTGAGCACTTCCGAGAATCGACTACT 126215 30 100.0 35 .............................. GAAGTAACCTCTACTCCGCTGTTTCTACACCCCCA 126280 30 100.0 34 .............................. CGGTGGATGTACCTCCACGGCGGCCTGCTCTCGT 126344 30 100.0 35 .............................. GTCCCCATGAGGCCCTCCCCGGTCTCGCCTTGGTA 126409 30 100.0 37 .............................. ATGGCGTCCTCTCTCGCGTCGAGGAACACGAAAAGCA 126476 30 100.0 36 .............................. AACTTTGAGGGGGAATTCCCCGAAGACCCCGGAACC 126542 30 100.0 36 .............................. CCCGCGTCCAGCGTCTCCCCAATATTTGTAAACCGT 126608 30 100.0 35 .............................. TCCCCCCGACGAGACGCGGGCGCGAATGTCGTAGC 126673 30 100.0 37 .............................. AGCGCGGTTGCACTGTCCCTCTAACCACACGACACGG 126740 30 100.0 37 .............................. GACCGAACGGTCGTCCATGGTCGCGGTTGCTTTTACC 126807 30 100.0 35 .............................. ATTGTCAATCCGGATTGAGTCGTGTGCCGCAAGCG 126872 30 100.0 36 .............................. TCTGGGCCGTTGTTGCTGCATCGGAGTCGTTGACGT 126938 30 100.0 37 .............................. GGGAACATCGAAGAACCGGGCAGTCGGACGCTTCCCT 127005 30 100.0 38 .............................. TGCGACTGCACCGAAGACCCGTCGCGGGCAGTCATCTC 127073 30 100.0 37 .............................. GCGTGGGTCCGGAGAGTCGCCTCGCCGCGGCTCTCCA 127140 30 100.0 35 .............................. TGACACGCCTGTTGCGACCTGTGCGGACAGGTAGC 127205 30 100.0 35 .............................. CGCGCAACCCTCTCGCGGCTCGACTCGGACGACTC 127270 30 100.0 37 .............................. TCTCGTCGACGAGCTCTGTTTTTCCACCCTTCCACCA 127337 30 100.0 36 .............................. GACTCTAACCTCTGCGACGGCTTGTTTGAGGGCCTG 127403 30 96.7 35 ...........G.................. ATCAAGCGCCACATCGACCGGCAGGGGACAGACGT 127468 30 100.0 34 .............................. GAGTCTTTCGCTGTTTTCTTGGCTTCTTCATTGT 127532 30 80.0 0 ...........G...G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.3 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTTGAGCGTACCGTCGACCATCCGAAACTCAATCGCAAGGTGAGCTACCAGTACCTGATGCGACTCGAAGCGTACAAACTGAAGAAGCATCTGTTGGCCGGCGAAGAGTACGAACCCTTCGAACGGTGGTGGTAAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGGCGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCAGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGATACACTTCTCGACCGCTCGGTCTACGGCGATGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGACTCGGGTTACTGAAGGTCGACGGAACTTCTTTATCATAGTCTTCCTTCAGAGGGTCTGTGTCCGTGATATCGGGCATG # Right flank : CGGAGAGTCATTAAGACGAAAGCGCGTGAAAGAAACAGACACGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAACTCGTCCGCGTTCGACTGCCACGAGTAGCGCGCTTCGATGACCGCCCGGTTCGTCCGACCCATGCGGACGGCCTCCGTGGGGTCGGAGACGAGTCGGGCGAGCGCGCGAGCCAGTTCCTCGGCGTCGCCGGGCGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTCCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATCGGAAGCCCCTCCGCGTAGGTCGGGAGGACGAACACGGTCCCGCGGCTGATGAGGTCGCGCTTGTCTTCCTCGGAGAGAAATCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //