Array 1 169829-166672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEAGO010000001.1 Penaeicola halotolerans strain LMIT005 NODE_1_length_939621_cov_176.455983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 169828 46 91.3 30 .......CAG..A................................. TTTTACGATACCGCCAGCAACATTCCTGCT GG,T,C [169812,169822,169826] 169748 46 100.0 30 .............................................. CCAAGCCTTTTAAATATGCTTCGTTTGTCT 169672 46 100.0 30 .............................................. ACAGGCATTTTTGAACGAGCTACGCAGATT 169596 46 100.0 30 .............................................. CAAGTGTTTACTGATGATATGCTTATGTTT 169520 46 100.0 30 .............................................. CTTATGTTGCCTTTACAAGTAACAGTTTTT 169444 46 100.0 30 .............................................. GAAATTAATTAGCTAAAGGAAAGGGGGAGA 169368 46 100.0 30 .............................................. CAAGGCTTGCTTTATTTGCTCCCGATATTT 169292 46 100.0 30 .............................................. CCAAGCCTTTTAAATATGCTTCGTTTGTCT 169216 46 100.0 30 .............................................. TATCTAGCTTACCTAACTCTTGCTTGGACT 169140 46 100.0 30 .............................................. TCAAACTCATCAAAGTCTTCCTGCTCATCA 169064 46 100.0 30 .............................................. TGCTACTCAAAAGGTATGGCTTCTACAGCA 168988 46 100.0 30 .............................................. TACATCCGCACTTGGTGACAAAAGCACCTT 168912 46 100.0 30 .............................................. TGTACCCCTCATAGTATGCTAGGGCTTGTA 168836 46 100.0 29 .............................................. GATTAGCTCTACACCCTTGAGGCTTCTCT 168761 46 100.0 30 .............................................. AACAGGAAGTTTTGGATTTATTAATGGAGC 168685 46 100.0 30 .............................................. CGAGCCTGCTCCCATTTTACTTCCCGGTTG 168609 46 100.0 30 .............................................. TCCATAGCTCACTTAATTATGTTTTTTTAT 168533 46 100.0 30 .............................................. AAATGGAAGCCTTATTTGGCTTATAAATTA 168457 46 100.0 30 .............................................. ACACAGAATTTGGAGCAGATTCTTTCGGAG 168381 46 100.0 30 .............................................. TTTCCTCGTGGTAGCTGATTTCGTACTCAA 168305 46 100.0 30 .............................................. ATTAGTCGCTTCGCTGATCTGTAGTAGATT 168229 46 100.0 30 .............................................. AATCAATCCACTAACACCCGCATCTTCCAA 168153 46 100.0 30 .............................................. GCTAGTAGATGCTACTGTAGTTGATCATAT 168077 46 100.0 30 .............................................. CCTATTCTCGTGCAAGCGATGTAGTTTTGA 168001 46 100.0 30 .............................................. TCAAACTCATCAAAGTCTTCATGCTCATCA 167925 46 100.0 29 .............................................. GACTAGCTTGAGTTGCTTTTCGGTGAGTT 167850 46 100.0 29 .............................................. TCTGTCTCTTGTATCAGCTTGAGTGGAAG 167775 46 100.0 29 .............................................. AGCACTTGCACCATGCATTTGAAGCGTCT 167700 46 100.0 30 .............................................. AGGCATCCAATCTTCTAACGGAGCTATTTT 167624 46 100.0 30 .............................................. ACCACCAGCTTTGAGTCCTCCCTCATAGCA 167548 46 100.0 30 .............................................. GGTGAGCGCATCATCCAGTTAGGTGCTACC 167472 46 100.0 30 .............................................. AAAATGGCATTGATATTAGGTTGTTATCAT 167396 46 100.0 29 .............................................. GACTGGCTCGCACGAAATACTGTCACACC 167321 46 100.0 29 .............................................. AGCTTTGATTACTTTGTCTTGTAGTTTCA 167246 46 100.0 30 .............................................. CCTGTATATCAATGGCCAGCTGGTAGGACT 167170 46 100.0 30 .............................................. GGATCTTCAGCGCAGGCCTTCACATGAGCA 167094 46 100.0 29 .............................................. ACCAAAACATCAATATGTCCGAAATGCGC 167019 46 100.0 30 .............................................. TTGAGAAGATTAAAGAAGTAGTTGTTGAAA 166943 46 100.0 30 .............................................. CGTAATTGTGATATTCTGCAAATCGGCAAA 166867 46 100.0 29 .............................................. AGCAGAATCAGAGGATATTATCGACTCGT 166792 46 100.0 29 .............................................. TCATGAATATCGGAAAGTATTTATCTTTG 166717 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 42 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTACATTCATAGATGATTCACAGG # Left flank : GCAATCAACAGGTATGTTAAAACCCTAGTTTACCCAATAGTAATCCAAAGCCAAACGGGTCTAATACGGCCAAGATACGGCTAAAATACGGCTATGCTATGGTTATAAAAGCTTATTAAAGCGTTTATAAAGAACTTTCAAAAACAAGATTTTTACCTTCTGATTGGTAGATATTTATTCTTAATTTGAACACTTATAAATTCTTATATTTAATGATTATCTCCCTAGCTAATAATGAAAAAGGAGGGTCTTTCAGCGTGTCCTGATAAATTGAAAAATTTAATCTAGTTTGAATTGCTCCTGTCTGTTGACAGGCAGGTTCATCATTATGCTTTTGCCAATTATTCGTGAACATTACGATAGATTAGGCTTGAACTACCTTTTGGTCTATTTGAAAGAAATTCATGATTTTCATTAATAAAAAACATATTTTAAATAAAGCTATACATTCAAACGAATAAGAGTTTTAGGAAAAAAGAGGTGTATTATGTATTGCTCCT # Right flank : ATACCTTAGCTTAAATCGCTGATATTCTGTGAATTAATCTATGTTTTAGGATTAAAAAATTAATCTCTAAAACAGCTTCAATCGAATGAGATTTTCAAATAATCCATTCCAATTTAAAAAATTTCTAGTTGCTGACTAGGCCTTTCCGTCTCTTGCGCTTTTGTACCAAGAAATATTTCCATCATACCAAATTGCCGATCAGTGATCTGCATAATGCCTACTTTGCCATTTGGCGGTAAATTCTTTTTGGTTCGCTTCATGTGTACATCAGCATTTTCTCTACTGGCACAGAATCTCATATAAATGGAAAATTGAAACATTGCAAAACCATCATCCAAGAGTTTTTTGCGAAAGCCTGAGGCTATCTTCCGATCTTTTTTCGTTTCAGTCGGCAGGTCGAAGAAAACTAGCACCCACATAGATCGGTATTGGTTAAGTCTAGCATATCGGCTTTCATCCATAGTGAGGATAGAGCATCTTGCGACTGATGCCAGCGAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTACATTCATAGATGATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //