Array 1 328905-328757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVO01000001.1 Escherichia coli strain UPEC_004 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 328904 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 328844 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 328784 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 119560-118128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVO01000004.1 Escherichia coli strain UPEC_004 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119559 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 119498 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 119437 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 119376 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 119315 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 119254 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 119193 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 119132 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 119071 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 119010 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATAAA 118949 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGAATATATT 118888 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 118827 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 118766 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 118705 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 118644 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 118583 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 118522 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 118461 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 118400 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 118339 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 118278 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 118216 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 118155 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147400-145476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVO01000004.1 Escherichia coli strain UPEC_004 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147399 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 147338 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 147277 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 147216 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 147155 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 147094 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 147033 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 146972 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 146911 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 146850 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 146789 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 146728 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 146667 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 146605 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 146544 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 146482 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGTCT 146421 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 146360 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 146299 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 146237 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 146176 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 146114 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 146053 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 145992 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 145931 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 145870 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 145809 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 145748 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 145687 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 145626 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 145565 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 145504 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TCAACGAAAACGCAGAGCGAGGAACGGATNGAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGCGTACATCAACGCAGCAGCAAGCGCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAGTTCAGGATGCATAATGAAATACCCGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGAAAACGCAGAGCGAGGAACGGATATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCAACATTTACCGCCGGTCAAAAACAGGACGTGTTCCCCGCGCCAGCGGGGATGAACCACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //