Array 1 10159-10786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPTU01000028.1 Gallibacterium anatis strain 10672/9 contig000025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10159 28 100.0 32 ............................ GGGCATAAGTCTAAAAATGCACGGCGTTTAGC 10219 28 100.0 32 ............................ ATTGCCGAAAATCAGGCAATGCCGGATAGATT 10279 28 100.0 32 ............................ GTGATAATTACGGGATTAAAGTTGGGGATATT 10339 28 100.0 32 ............................ AGATTCATAAAACAAAATTACAAAATTATTTA 10399 28 100.0 32 ............................ ACATAGCCTTCGTTGCGGTAATAACTGTCAAT 10459 28 100.0 32 ............................ GGTTCTACTCACTTTCTCGTTTTCCGGTAAAA 10519 28 100.0 32 ............................ AAGCAACGCATAAAAATCATTGCCTTTTGTTC 10579 28 100.0 32 ............................ GTACTGAAACAAAAAGAAAATTTCTCCGTCGC 10639 28 100.0 32 ............................ TTTCTCGCTTCCCTAAATTCATTTCGCTTTGT 10699 28 100.0 33 ............................ TTGCGTGTTGTTTTGATGTAGATAGTCTGTACT 10760 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.1 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATATTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATCTGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACATCTAAAAAAGGGTTTTTATCTTAAAATGTTCTTTAACAATTGACTATCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ATACAATTATTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTATCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGAAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTGTCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTACTACAAGTGAACAATGAGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18439-18872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPTU01000014.1 Gallibacterium anatis strain 10672/9 contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18439 33 100.0 34 ................................. TGGGTATCCGCCTGCACAATTTAGGTTTGAATTA 18506 33 100.0 33 ................................. ATTGATTGGATCGCTGCACGCTGCCCGGTGCAT 18572 33 100.0 35 ................................. ATCCGCACTAGGTGCTGATGTGAAAGTCAAGAGGT 18640 33 100.0 32 ................................. ACAAAAAAGCATATATACTAAAGTAAAAAAAT 18705 33 100.0 36 ................................. TACCGTTTTTGTGCCGTTTGCGGTTACGTGCGATCA 18774 33 97.0 33 A................................ TTTTGCAAGTTTGGCAACCTCTTTAACCACCGC 18840 33 90.9 0 ............................T..GT | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 98.3 34 TCGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : GCGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGTGATATTACTCCAGATCAATAGGTTAAACTAAAAACGAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGTGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTAGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGC # Right flank : TCAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCAGCATTAATCATTACCTAACACATTTAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGTCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCCTGACTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAATAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 17826-15657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPTU01000044.1 Gallibacterium anatis strain 10672/9 contig000041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 17825 36 100.0 35 .................................... TGAATGCGTGGAGCGGAGTCACGCCCGATTCCAGT 17754 36 100.0 34 .................................... TGCATTTCCAGAAGATCCTGCAACACGTCAGAAT 17684 36 100.0 35 .................................... ATGCATCAAAACCGCATCCGTGTATATGTACTTCT 17613 36 100.0 36 .................................... TACATCTGGGCGTCAGTTCTGGTGTGTTGTGTTAAG 17541 36 100.0 36 .................................... TGGTATTGCAAGTACATTCTGATGGTTCACTTCACC 17469 36 100.0 36 .................................... AGATAAATAGTACTCAAATTCTGAATTTTCCTCTCT 17397 36 100.0 33 .................................... TGTGCATCCGCCCTGGTATTCGTACCCATCAGC 17328 36 100.0 33 .................................... TAGCCATGTTTAACGGCTACCTGTGCAAGGGCG 17259 36 100.0 33 .................................... TTTCTAATGACTTGCTAGCACTTATGTAATCAC 17190 36 100.0 35 .................................... AGTTAAAATTTCATCATATCCGCTGCGTGTGTTAA 17119 36 100.0 36 .................................... CATCGGGCGCAGTTGTGAATGTGAGAAGACTTCGTT 17047 36 100.0 36 .................................... TTTTTCGCAATCCGCACTTTTAAATGATGATTGCGG 16975 36 100.0 35 .................................... ACTCAAAAGTGAGGAGAGTTCTCACTTTCTGTAAG 16904 36 100.0 36 .................................... GCGTAACTGTTGTTACAATTATCTAATAGATAATCT 16832 36 100.0 33 .................................... TTATTATCTTTTGGTATTTTGCACTCACCGAAA 16763 36 100.0 36 .................................... ATTAATTAATGCTCAATGGCAGAAAACGCTCAAAGA 16691 36 100.0 36 .................................... AATTTAAAATTTCCATTTTTCACCTCCTTTTAGGTT 16619 36 100.0 35 .................................... CTCTTGGTGCAGGCGATTCATCTCGGCGTATATGT 16548 36 100.0 35 .................................... TAGCCTTACGGCTGTTGATTGAATATTGATAATTG 16477 36 100.0 36 .................................... TTTAAAAAATTTCTAAAATTTTTATTTTTTGAGAAC 16405 36 100.0 34 .................................... CATTAGATAGCCAGCACCTCCAATCATGGCGTAG 16335 36 100.0 34 .................................... AAAATTGAGTATCCATAATAATTTCTCCTTAGCC 16265 36 100.0 35 .................................... GTGTGTTCCAGCATAAAGTCAGGATCCTGCATATC 16194 36 100.0 35 .................................... TGCGGATTTGAAAGTCAATAATTCCTTGATTTTCT 16123 36 100.0 36 .................................... TTGCGGATACCCTGCGGTATGGGTAGTTACATACCC 16051 36 100.0 38 .................................... AAATTGAGTAGCCATAATTTCCCCTTAGCCATTCAATG 15977 36 97.2 34 ...................................T ATGCTTGTGCAGAAAATTTAACCATATTTTTGGG 15907 36 97.2 38 .........................A.......... AACCGAGCAATCGCAGCCAAAGCATTAGCTGTACCAGC 15833 36 100.0 34 .................................... TAGCCAGCCCCGCCGATCATTGCGAAATCGCATC 15763 36 100.0 35 .................................... TTGTCTAAAGCGGTAATATCATTTAGCTCTCTGTT 15692 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 31 36 99.4 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : AGAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTGTTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCTATTGCGCCAGTGATTGAAACAATTAATAATAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAAGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACTAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TATAAAAGACATTAATGATAATTCTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACTACCTTATTTGCGGTTACCGTTACTGCGCATGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGATGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //